mRNA_E-fasciculatus_F_contig10289.258.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig10289.258.1
Unique NamemRNA_E-fasciculatus_F_contig10289.258.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig10289.258.1 vs. uniprot
Match: D8LJR8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJR8_ECTSI)

HSP 1 Score: 70.9 bits (172), Expect = 4.240e-12
Identity = 39/56 (69.64%), Postives = 39/56 (69.64%), Query Frame = 1 
Query:  145 TKDGKNGPRLASEXQHPAXXXXXXXXXXARKERASCPCGGERHNPEAVRRVDISRM 312
            TKDG NGPRLASE QHPA          A KERAS P GGE HNPE VRRVDISRM
Sbjct:  252 TKDGTNGPRLASEEQHPAGGESAEAA--AGKERASSPRGGEHHNPEVVRRVDISRM 305
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10289.258.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LJR8_ECTSI4.240e-1269.64Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10289contigE-fasciculatus_F_contig10289:4638..4949 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size313
Cds size312
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927529.786846-CDS-E-fasciculatus_F_contig10289:4637..49491622927529.786846-CDS-E-fasciculatus_F_contig10289:4637..4949Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10289 4638..4949 +
1695995580.4166837-CDS-E-fasciculatus_F_contig10289:4637..49491695995580.4166837-CDS-E-fasciculatus_F_contig10289:4637..4949Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10289 4638..4949 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10289.258.1prot_E-fasciculatus_F_contig10289.258.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig10289 4638..4949 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig10289.258.1

>prot_E-fasciculatus_F_contig10289.258.1 ID=prot_E-fasciculatus_F_contig10289.258.1|Name=mRNA_E-fasciculatus_F_contig10289.258.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=104bp
SDAEVGEGVKDREEEDEDDDDNNDKKKESDDGDRGADQKEEEEAAGDETK
DGKNGPRLASEEQHPAGGESAPAAAAARKERASCPCGGERHNPEAVRRVD
ISRM
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mRNA from alignment at E-fasciculatus_F_contig10289:4638..4949+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig10289.258.1 ID=mRNA_E-fasciculatus_F_contig10289.258.1|Name=mRNA_E-fasciculatus_F_contig10289.258.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=312bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10289:4638..4949+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TCGGACGCCGAGGTGGGGGAGGGGGTTAAGGACAGGGAGGAGGAGGACGA
AGACGACGACGATAACAACGATAAGAAGAAGGAGAGCGACGACGGAGACC
GAGGCGCGGACCAAAAAGAGGAAGAAGAAGCTGCTGGGGACGAGACTAAA
GACGGCAAGAACGGCCCGCGACTCGCGAGTGAAGAGCAACACCCAGCGGG
GGGAGAGTCAGCACCGGCGGCGGCGGCGGCACGAAAAGAGCGGGCATCGT
GTCCCTGCGGGGGGGAGCGCCACAACCCGGAGGCGGTGAGGCGGGTCGAC
ATCAGCAGGATG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10289:4638..4949+

>mRNA_E-fasciculatus_F_contig10289.258.1 ID=mRNA_E-fasciculatus_F_contig10289.258.1|Name=mRNA_E-fasciculatus_F_contig10289.258.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=624bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10289:4638..4949+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TCGGACGCCGAGGTGGGGGAGGGGGTTAAGGACAGGGAGGAGGAGGACGA
AGACGACGACGATAACAACGATAAGAAGAAGGAGAGCGACGACGGAGACC
GAGGCGCGGACCAAAAAGAGGAAGAAGAAGCTGCTGGGGACGAGACTAAA
GACGGCAAGAACGGCCCGCGACTCGCGAGTGAAGAGCAACACCCAGCGGG
GGGAGAGTCAGCACCGGCGGCGGCGGCGGCACGAAAAGAGCGGGCATCGT
GTCCCTGCGGGGGGGAGCGCCACAACCCGGAGGCGGTGAGGCGGGTCGAC
ATCAGCAGGATGTCGGACGCCGAGGTGGGGGAGGGGGTTAAGGACAGGGA
GGAGGAGGACGAAGACGACGACGATAACAACGATAAGAAGAAGGAGAGCG
ACGACGGAGACCGAGGCGCGGACCAAAAAGAGGAAGAAGAAGCTGCTGGG
GACGAGACTAAAGACGGCAAGAACGGCCCGCGACTCGCGAGTGAAGAGCA
ACACCCAGCGGGGGGAGAGTCAGCACCGGCGGCGGCGGCGGCACGAAAAG
AGCGGGCATCGTGTCCCTGCGGGGGGGAGCGCCACAACCCGGAGGCGGTG
AGGCGGGTCGACATCAGCAGGATG
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