mRNA_E-fasciculatus_F_contig1027.245.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1027.245.1
Unique NamemRNA_E-fasciculatus_F_contig1027.245.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1027.245.1 vs. uniprot
Match: D7FWU0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWU0_ECTSI)

HSP 1 Score: 214 bits (544), Expect = 8.810e-64
Identity = 241/326 (73.93%), Postives = 257/326 (78.83%), Query Frame = 1 
Query:    1 KTMLNPLASNKTVLNHLMGFADHTQYLFFATVCRGWSRTWGERPAVTRAVSNGTSVSQLSYSFGCGLPRTKGICETATRLGRLDLLQCAVLNDCPFGTMVCAEAALRGHLGIIWWARTYGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNIEKETAQETDGVAEGCQPHDPETGPTGSQPILQDLSTAQSSSPEMHGKMLDELDREAHLRGIVSVIWGNDPPLSDIEDSLLGFDPLFSDDD 978
            KTMLNPL SNKTV+NHLM + DH QYLFFATVCRGWSR WGERPAVTRA +NGTSVSQLS+SF CGL RTKGICETA +LGRLDLLQCAVLN CP G M                      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     +IEKET QETDGVAEGC P D E  P G +PI QD +TAQSSS EMH    DEL+R        +VI+G+D P  +IE++L   DPL SD+D
Sbjct:    3 KTMLNPLTSNKTVVNHLMEYVDHNQYLFFATVCRGWSRAWGERPAVTRAATNGTSVSQLSFSFHCGLRRTKGICETAAKLGRLDLLQCAVLNGCPIGKMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRDPDSIEKETGQETDGVAEGCPPPDAEMSPAGPEPIRQDFTTAQSSSLEMHDLTPDELERARKDCAFHAVIYGDDAPPLEIEEALRRLDPLCSDED 328
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BLAST of mRNA_E-fasciculatus_F_contig1027.245.1 vs. uniprot
Match: A0A6H5JGL7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGL7_9PHAE)

HSP 1 Score: 148 bits (373), Expect = 4.700e-38
Identity = 212/349 (60.74%), Postives = 227/349 (65.04%), Query Frame = 1 
Query:    4 TMLNPLASNKTVLNHLMGFADHTQYLFFATVCRGWSRTWGERPAVTRAVSNGTSVSQLSYSFGCGLPRTKGICETATRLGRLDLLQCAVLNDCPFGTMVCAEAALRGHLGIIWWARTYGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------------------------------------NIEKETAQETDGVAEGCQPHDPETGPTGSQPILQDLSTAQSSSPEMHGKMLDELDREAHLRGIVSVIWGND-PPLSD 930
            TMLNPL SN TV+NHLM +ADH QY+F ATVC GWSR  G RPAVTRAV+  T VSQLSYS  C LP TKGIC TA +LGRLD LQC +LN CP G M                      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX            XXXXXXXXXXXX                                       N+EKET QETDGVAEGC P D E    G +PI Q+ +TAQSSS EMH    DEL+R      + +VI+G+D PP  D
Sbjct:    4 TMLNPLTSNNTVVNHLMEYADHNQYVFLATVCMGWSRACGGRPAVTRAVTTRTLVSQLSYSLHCSLPGTKGICATAAKLGRLDRLQCTMLNGCPIGKMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAAARGHEDTYKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWRVLQFCLENGFPRDPGNVEKETGQETDGVAEGCPPPDAEMSTAGPEPIRQNFTTAQSSSLEMHDPTPDELERARKYCALHAVIYGDDAPPFGD 352
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BLAST of mRNA_E-fasciculatus_F_contig1027.245.1 vs. uniprot
Match: D7FMS7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMS7_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 1.620e-20
Identity = 47/82 (57.32%), Postives = 55/82 (67.07%), Query Frame = 1 
Query:   58 FADHTQYLFFATVCRGWSRTWGERPAVTRAVSNGTSVSQLSYSFGCGLPRTKGICETATRLGRLDLLQCAVLNDCPFGTMVC 303
            F D  QYLFFA+V RGW   WG+RP VT+A++  TSVSQLS SF CGL RT  +CET   LGRLDLL+ A    CP+    C
Sbjct:   18 FVDDNQYLFFASVSRGWRDVWGKRPTVTKALTADTSVSQLSLSFECGLRRTAAVCETVAGLGRLDLLRRARAMGCPWNENTC 99
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BLAST of mRNA_E-fasciculatus_F_contig1027.245.1 vs. uniprot
Match: A0A6H5L0J7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0J7_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 9.300e-20
Identity = 45/89 (50.56%), Postives = 57/89 (64.04%), Query Frame = 1 
Query:   37 VLNHLMGFADHTQYLFFATVCRGWSRTWGERPAVTRAVSNGTSVSQLSYSFGCGLPRTKGICETATRLGRLDLLQCAVLNDCPFGTMVC 303
            +++ +  F D  QYLFFA+V RGW   WG+RP VT+A++  TSV QLS SF CGL RT  +CET   LGRLDLL+ A    C +    C
Sbjct:    9 IVSTVAEFVDDNQYLFFASVSRGWRDVWGKRPTVTKALTADTSVPQLSLSFECGLRRTAAVCETVAGLGRLDLLRRARAMGCQWNENTC 97
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BLAST of mRNA_E-fasciculatus_F_contig1027.245.1 vs. uniprot
Match: D7G8V2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8V2_ECTSI)

HSP 1 Score: 99.4 bits (246), Expect = 1.180e-19
Identity = 44/95 (46.32%), Postives = 60/95 (63.16%), Query Frame = 1 
Query:   19 LASNKTVLNHLMGFADHTQYLFFATVCRGWSRTWGERPAVTRAVSNGTSVSQLSYSFGCGLPRTKGICETATRLGRLDLLQCAVLNDCPFGTMVC 303
            L +   V + L+ F D+ Q+LFFA VCR W   WG+RP  TRAV+  T+V+QLS +F CGL     +C +  +LGRLDLLQCA  + C +  + C
Sbjct:    5 LFAQSDVASCLVEFVDYEQFLFFAGVCRAWKEAWGQRPPTTRAVTEDTTVAQLSQNFQCGLSLIADVCTSVAKLGRLDLLQCARRHGCAWNEVTC 99
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BLAST of mRNA_E-fasciculatus_F_contig1027.245.1 vs. uniprot
Match: D7FH78_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH78_ECTSI)

HSP 1 Score: 84.0 bits (206), Expect = 1.460e-14
Identity = 41/93 (44.09%), Postives = 56/93 (60.22%), Query Frame = 1 
Query:   25 SNKTVLNHLMGFADHTQYLFFATVCRGWSRTWGERPAVTRAVSNGTSVSQLSYSFGCGLPRTK-GICETATRLGRLDLLQCAVLNDCPFGTMV 300
            +N+ +L  L  F    Q+LFFA V +GW   W +RP +T  V+  T+ SQL +SF CGLP+ + G+C    RLG+L+LL CAV   CP    V
Sbjct:  111 TNRNILLCLAQFVPDNQFLFFAPVAKGWRAAW-QRPTITAHVTPDTTTSQLQHSFECGLPQNQTGLCAALARLGKLNLLACAVGAGCPMNARV 202
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1027.245.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FWU0_ECTSI8.810e-6473.93Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JGL7_9PHAE4.700e-3860.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FMS7_ECTSI1.620e-2057.32Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L0J7_9PHAE9.300e-2050.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G8V2_ECTSI1.180e-1946.32Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FH78_ECTSI1.460e-1444.09Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1027contigE-fasciculatus_F_contig1027:8964..9941 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.8
Seed ortholog evalue1e-14
Seed eggNOG ortholog2880.D7FJY0
KEGG koko:K06052
KEGG Pathwayko01522,ko04330,ko04371,ko04658,ko04668,ko05165,ko05200,ko05224,map01522,map04330,map04371,map04658,map04668,map05165,map05200,map05224
EggNOG OGs2AMK4@1,2RZCC@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04090
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-13_001200.1
Exons1
Model size978
Cds size972
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927528.2779167-CDS-E-fasciculatus_F_contig1027:8963..99351622927528.2779167-CDS-E-fasciculatus_F_contig1027:8963..9935Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1027 8964..9935 -
1695995579.6243632-CDS-E-fasciculatus_F_contig1027:8963..99351695995579.6243632-CDS-E-fasciculatus_F_contig1027:8963..9935Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1027 8964..9935 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927528.2924647-UTR-E-fasciculatus_F_contig1027:9935..99411622927528.2924647-UTR-E-fasciculatus_F_contig1027:9935..9941Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1027 9936..9941 -
1695995579.6386015-UTR-E-fasciculatus_F_contig1027:9935..99411695995579.6386015-UTR-E-fasciculatus_F_contig1027:9935..9941Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1027 9936..9941 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1027.245.1prot_E-fasciculatus_F_contig1027.245.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1027 8964..9935 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1027.245.1

>prot_E-fasciculatus_F_contig1027.245.1 ID=prot_E-fasciculatus_F_contig1027.245.1|Name=mRNA_E-fasciculatus_F_contig1027.245.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=324bp
MLNPLASNKTVLNHLMGFADHTQYLFFATVCRGWSRTWGERPAVTRAVSN
GTSVSQLSYSFGCGLPRTKGICETATRLGRLDLLQCAVLNDCPFGTMVCA
EAALRGHLGIIWWARTYGSEWDENTCSAAASGRHLKILQYCREHGCPWDS
GTAASAARCGSLSVLKWAKENGCEWDEDTCTSAAFGGHLEILMWCREQGC
GWNEETAAVAAARGHEDVFQFCIENGCPWDPDNIEKETAQETDGVAEGCQ
PHDPETGPTGSQPILQDLSTAQSSSPEMHGKMLDELDREAHLRGIVSVIW
GNDPPLSDIEDSLLGFDPLFSDDD
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mRNA from alignment at E-fasciculatus_F_contig1027:8964..9941-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1027.245.1 ID=mRNA_E-fasciculatus_F_contig1027.245.1|Name=mRNA_E-fasciculatus_F_contig1027.245.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=978bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1027:8964..9941- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AAGACCATGCTCAACCCTCTCGCCAGCAACAAGACCGTCCTCAACCACCT
GATGGGCTTCGCGGATCACACCCAATACCTGTTCTTCGCGACCGTGTGCA
GAGGTTGGTCGCGCACGTGGGGCGAGCGGCCTGCCGTCACCCGAGCCGTG
TCGAACGGAACGTCCGTGTCCCAGCTATCCTACAGCTTCGGCTGTGGCCT
CCCCAGAACCAAAGGAATCTGCGAGACCGCCACCAGGCTAGGCAGGCTCG
ATCTCCTTCAGTGCGCCGTGCTGAACGATTGCCCGTTCGGGACGATGGTA
TGCGCCGAGGCGGCCTTGCGCGGACACCTCGGGATCATCTGGTGGGCGAG
GACGTACGGCTCCGAGTGGGACGAGAACACCTGCTCGGCTGCCGCTAGCG
GGAGACACCTGAAAATCCTGCAGTACTGCCGAGAGCACGGGTGCCCGTGG
GACTCCGGAACGGCCGCCTCAGCCGCGCGGTGCGGGAGCCTCAGCGTGCT
CAAGTGGGCCAAAGAAAACGGCTGCGAGTGGGATGAAGACACATGCACGT
CCGCGGCCTTCGGGGGACATCTCGAGATCCTGATGTGGTGCCGAGAACAG
GGGTGCGGGTGGAACGAAGAGACTGCCGCTGTCGCCGCCGCTCGGGGGCA
CGAAGACGTTTTCCAGTTCTGCATCGAGAACGGGTGCCCGTGGGACCCCG
ACAATATCGAGAAGGAGACGGCGCAGGAAACGGACGGTGTAGCCGAAGGA
TGTCAACCGCATGACCCTGAAACGGGCCCGACCGGGTCCCAGCCAATCTT
GCAGGACCTCTCTACGGCGCAGTCGTCGTCCCCAGAGATGCACGGCAAGA
TGCTCGATGAGCTGGACCGGGAAGCGCACCTCCGCGGAATCGTTTCGGTC
ATTTGGGGAAATGACCCCCCGCTCTCGGACATCGAGGATTCTTTGCTGGG
CTTCGATCCTCTCTTTAGCGATGACGAC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1027:8964..9941-

>mRNA_E-fasciculatus_F_contig1027.245.1 ID=mRNA_E-fasciculatus_F_contig1027.245.1|Name=mRNA_E-fasciculatus_F_contig1027.245.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1944bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1027:8964..9941- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCTCAACCCTCTCGCCAGCAACAAGACCGTCCTCAACCACCTGATGGG
CTTCGCGGATCACACCCAATACCTGTTCTTCGCGACCGTGTGCAGAGGTT
GGTCGCGCACGTGGGGCGAGCGGCCTGCCGTCACCCGAGCCGTGTCGAAC
GGAACGTCCGTGTCCCAGCTATCCTACAGCTTCGGCTGTGGCCTCCCCAG
AACCAAAGGAATCTGCGAGACCGCCACCAGGCTAGGCAGGCTCGATCTCC
TTCAGTGCGCCGTGCTGAACGATTGCCCGTTCGGGACGATGGTATGCGCC
GAGGCGGCCTTGCGCGGACACCTCGGGATCATCTGGTGGGCGAGGACGTA
CGGCTCCGAGTGGGACGAGAACACCTGCTCGGCTGCCGCTAGCGGGAGAC
ACCTGAAAATCCTGCAGTACTGCCGAGAGCACGGGTGCCCGTGGGACTCC
GGAACGGCCGCCTCAGCCGCGCGGTGCGGGAGCCTCAGCGTGCTCAAGTG
GGCCAAAGAAAACGGCTGCGAGTGGGATGAAGACACATGCACGTCCGCGG
CCTTCGGGGGACATCTCGAGATCCTGATGTGGTGCCGAGAACAGGGGTGC
GGGTGGAACGAAGAGACTGCCGCTGTCGCCGCCGCTCGGGGGCACGAAGA
CGTTTTCCAGTTCTGCATCGAGAACGGGTGCCCGTGGGACCCCGACAATA
TCGAGAAGGAGACGGCGCAGGAAACGGACGGTGTAGCCGAAGGATGTCAA
CCGCATGACCCTGAAACGGGCCCGACCGGGTCCCAGCCAATCTTGCAGGA
CCTCTCTACGGCGCAGTCGTCGTCCCCAGAGATGCACGGCAAGATGCTCG
ATGAGCTGGACCGGGAAGCGCACCTCCGCGGAATCGTTTCGGTCATTTGG
GGAAATGACCCCCCGCTCTCGGACATCGAGGATTCTTTGCTGGGCTTCGA
TCCTCTCTTTAGCGATGACGACATGCTCAACCCTCTCGCCAGCAACAAGA
CCGTCCTCAACCACCTGATGGGCTTCGCGGATCACACCCAATACCTGTTC
TTCGCGACCGTGTGCAGAGGTTGGTCGCGCACGTGGGGCGAGCGGCCTGC
CGTCACCCGAGCCGTGTCGAACGGAACGTCCGTGTCCCAGCTATCCTACA
GCTTCGGCTGTGGCCTCCCCAGAACCAAAGGAATCTGCGAGACCGCCACC
AGGCTAGGCAGGCTCGATCTCCTTCAGTGCGCCGTGCTGAACGATTGCCC
GTTCGGGACGATGGTATGCGCCGAGGCGGCCTTGCGCGGACACCTCGGGA
TCATCTGGTGGGCGAGGACGTACGGCTCCGAGTGGGACGAGAACACCTGC
TCGGCTGCCGCTAGCGGGAGACACCTGAAAATCCTGCAGTACTGCCGAGA
GCACGGGTGCCCGTGGGACTCCGGAACGGCCGCCTCAGCCGCGCGGTGCG
GGAGCCTCAGCGTGCTCAAGTGGGCCAAAGAAAACGGCTGCGAGTGGGAT
GAAGACACATGCACGTCCGCGGCCTTCGGGGGACATCTCGAGATCCTGAT
GTGGTGCCGAGAACAGGGGTGCGGGTGGAACGAAGAGACTGCCGCTGTCG
CCGCCGCTCGGGGGCACGAAGACGTTTTCCAGTTCTGCATCGAGAACGGG
TGCCCGTGGGACCCCGACAATATCGAGAAGGAGACGGCGCAGGAAACGGA
CGGTGTAGCCGAAGGATGTCAACCGCATGACCCTGAAACGGGCCCGACCG
GGTCCCAGCCAATCTTGCAGGACCTCTCTACGGCGCAGTCGTCGTCCCCA
GAGATGCACGGCAAGATGCTCGATGAGCTGGACCGGGAAGCGCACCTCCG
CGGAATCGTTTCGGTCATTTGGGGAAATGACCCCCCGCTCTCGGACATCG
AGGATTCTTTGCTGGGCTTCGATCCTCTCTTTAGCGATGACGAC
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