mRNA_E-fasciculatus_F_contig10268.242.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig10268.242.1
Unique NamemRNA_E-fasciculatus_F_contig10268.242.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig10268.242.1 vs. uniprot
Match: D7G102_ECTSI (Fatty acid desaturase, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G102_ECTSI)

HSP 1 Score: 134 bits (336), Expect = 6.260e-40
Identity = 61/63 (96.83%), Postives = 62/63 (98.41%), Query Frame = 1
Query:    1 MGGINYQIEHHLFPSMSHMLYAEIAPIVKDACEEFSIPYNAHPTLWSAYASYLKHLVVCSETS 189
            MGGINYQIEHHLFPSMSHMLYAEIAPIVKDACEEF+IPYNAHPTLWSAYASYLKHLVVCSE S
Sbjct:    1 MGGINYQIEHHLFPSMSHMLYAEIAPIVKDACEEFNIPYNAHPTLWSAYASYLKHLVVCSEMS 63          
BLAST of mRNA_E-fasciculatus_F_contig10268.242.1 vs. uniprot
Match: A0A6H5KKY7_9PHAE (Cytochrome b5 heme-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKY7_9PHAE)

HSP 1 Score: 131 bits (329), Expect = 4.280e-34
Identity = 59/63 (93.65%), Postives = 62/63 (98.41%), Query Frame = 1
Query:    1 MGGINYQIEHHLFPSMSHMLYAEIAPIVKDACEEFSIPYNAHPTLWSAYASYLKHLVVCSETS 189
            MGGINYQIEHHLFPSMSHMLYAEIAPIVKDAC+EF+IPYNAHPTLW+AYASYLKHLVVCSE S
Sbjct:  629 MGGINYQIEHHLFPSMSHMLYAEIAPIVKDACKEFNIPYNAHPTLWTAYASYLKHLVVCSEMS 691          
BLAST of mRNA_E-fasciculatus_F_contig10268.242.1 vs. uniprot
Match: A0A835YNM2_9STRA (FA_desaturase domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNM2_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 9.650e-25
Identity = 41/55 (74.55%), Postives = 47/55 (85.45%), Query Frame = 1
Query:    4 GGINYQIEHHLFPSMSHMLYAEIAPIVKDACEEFSIPYNAHPTLWSAYASYLKHL 168
            GGINYQIEHHLFPSM HM YA +AP+V+  C EF+IPY+AH TLWSAYASYL+ L
Sbjct:    2 GGINYQIEHHLFPSMCHMHYARVAPVVRATCAEFAIPYSAHDTLWSAYASYLRSL 56          
BLAST of mRNA_E-fasciculatus_F_contig10268.242.1 vs. uniprot
Match: A0A4Y6Q468_9DELT (Acyl-CoA desaturase n=2 Tax=Persicimonas caeni TaxID=2292766 RepID=A0A4Y6Q468_9DELT)

HSP 1 Score: 82.0 bits (201), Expect = 4.810e-17
Identity = 31/56 (55.36%), Postives = 44/56 (78.57%), Query Frame = 1
Query:    1 MGGINYQIEHHLFPSMSHMLYAEIAPIVKDACEEFSIPYNAHPTLWSAYASYLKHL 168
            +GG+NYQ+EHHLFP +SH+ Y ++A IV++ CEEF +PY+A PTLW    S+ +HL
Sbjct:  256 VGGLNYQVEHHLFPRISHIHYPKLAEIVRETCEEFGVPYHAQPTLWGGIRSHFRHL 311          
BLAST of mRNA_E-fasciculatus_F_contig10268.242.1 vs. uniprot
Match: UPI0012E13FAB (acyl-CoA desaturase n=1 Tax=Sphingobacterium endophyticum TaxID=2546448 RepID=UPI0012E13FAB)

HSP 1 Score: 79.0 bits (193), Expect = 7.980e-16
Identity = 31/52 (59.62%), Postives = 41/52 (78.85%), Query Frame = 1
Query:    1 MGGINYQIEHHLFPSMSHMLYAEIAPIVKDACEEFSIPYNAHPTLWSAYASY 156
            +GG+N+Q+EHHLFP +SH+ Y E+  IVK  C EFSIPYN +PT WSA+ S+
Sbjct:  293 LGGLNFQVEHHLFPKISHIHYPELNKIVKSTCREFSIPYNEYPTFWSAFNSH 344          
BLAST of mRNA_E-fasciculatus_F_contig10268.242.1 vs. uniprot
Match: E0ZJ63_PICSI (Sphingolipid desaturase-like protein (Fragment) n=5 Tax=Picea sitchensis TaxID=3332 RepID=E0ZJ63_PICSI)

HSP 1 Score: 75.5 bits (184), Expect = 1.220e-15
Identity = 28/55 (50.91%), Postives = 42/55 (76.36%), Query Frame = 1
Query:    4 GGINYQIEHHLFPSMSHMLYAEIAPIVKDACEEFSIPYNAHPTLWSAYASYLKHL 168
            GG+NYQIEHHLFPS+ H+ Y  I  IVK+ C++F +PY+++P+ W+A  ++  HL
Sbjct:   96 GGLNYQIEHHLFPSVCHLYYPSIHSIVKETCKDFDVPYHSYPSFWTALKAHFLHL 150          
BLAST of mRNA_E-fasciculatus_F_contig10268.242.1 vs. uniprot
Match: A9UZE4_MONBE (Predicted protein n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9UZE4_MONBE)

HSP 1 Score: 78.6 bits (192), Expect = 1.570e-15
Identity = 32/56 (57.14%), Postives = 43/56 (76.79%), Query Frame = 1
Query:    4 GGINYQIEHHLFPSMSHMLYAEIAPIVKDACEEFSIPYNAHPTLWSAYASYLKHLV 171
            GG+NYQIEHHLFP+++H  +  I PIVK  C+++S+PYN  PTL+ A+  YL HLV
Sbjct:  385 GGLNYQIEHHLFPTVNHCHHRHIQPIVKAVCDKYSVPYNYTPTLYGAFRKYLDHLV 440          
BLAST of mRNA_E-fasciculatus_F_contig10268.242.1 vs. uniprot
Match: A0A522T616_9BACT (Acyl-CoA desaturase n=1 Tax=Chitinophagaceae bacterium TaxID=1869212 RepID=A0A522T616_9BACT)

HSP 1 Score: 77.4 bits (189), Expect = 3.150e-15
Identity = 32/56 (57.14%), Postives = 44/56 (78.57%), Query Frame = 1
Query:    1 MGGINYQIEHHLFPSMSHMLYAEIAPIVKDACEEFSIPYNAHPTLWSAYASYLKHL 168
            +GG+N+QIEHHLFP +SH+ Y  I+P+VK+ C EF++PY A+PT   A AS+L HL
Sbjct:  294 LGGLNFQIEHHLFPRVSHVHYRAISPLVKETCREFNLPYVAYPTFAKAVASHLLHL 349          
BLAST of mRNA_E-fasciculatus_F_contig10268.242.1 vs. uniprot
Match: A0A7C3KU47_9BACT (Acyl-CoA desaturase n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A7C3KU47_9BACT)

HSP 1 Score: 76.6 bits (187), Expect = 5.720e-15
Identity = 32/55 (58.18%), Postives = 42/55 (76.36%), Query Frame = 1
Query:    4 GGINYQIEHHLFPSMSHMLYAEIAPIVKDACEEFSIPYNAHPTLWSAYASYLKHL 168
            GG+NYQIEHHLFP +SH+ Y  I+ +VKD C +FSIPY  +PT+ SA  S++ HL
Sbjct:  297 GGLNYQIEHHLFPKISHVHYPGISKVVKDVCRQFSIPYIEYPTMMSALRSHIAHL 351          
BLAST of mRNA_E-fasciculatus_F_contig10268.242.1 vs. uniprot
Match: A0A176W6Z5_MARPO (Cytochrome b5 heme-binding domain-containing protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A176W6Z5_MARPO)

HSP 1 Score: 77.0 bits (188), Expect = 5.860e-15
Identity = 29/55 (52.73%), Postives = 42/55 (76.36%), Query Frame = 1
Query:    4 GGINYQIEHHLFPSMSHMLYAEIAPIVKDACEEFSIPYNAHPTLWSAYASYLKHL 168
            GG+N+QIEHHLFP + H+ Y  I PIVK  C+EF++PY ++PT W+A  ++ +HL
Sbjct:  602 GGLNHQIEHHLFPGVCHVHYPSIQPIVKATCDEFNVPYTSYPTFWAALRAHFQHL 656          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10268.242.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G102_ECTSI6.260e-4096.83Fatty acid desaturase, partial n=1 Tax=Ectocarpus ... [more]
A0A6H5KKY7_9PHAE4.280e-3493.65Cytochrome b5 heme-binding domain-containing prote... [more]
A0A835YNM2_9STRA9.650e-2574.55FA_desaturase domain-containing protein (Fragment)... [more]
A0A4Y6Q468_9DELT4.810e-1755.36Acyl-CoA desaturase n=2 Tax=Persicimonas caeni Tax... [more]
UPI0012E13FAB7.980e-1659.62acyl-CoA desaturase n=1 Tax=Sphingobacterium endop... [more]
E0ZJ63_PICSI1.220e-1550.91Sphingolipid desaturase-like protein (Fragment) n=... [more]
A9UZE4_MONBE1.570e-1557.14Predicted protein n=1 Tax=Monosiga brevicollis Tax... [more]
A0A522T616_9BACT3.150e-1557.14Acyl-CoA desaturase n=1 Tax=Chitinophagaceae bacte... [more]
A0A7C3KU47_9BACT5.720e-1558.18Acyl-CoA desaturase n=1 Tax=Bacteroidetes bacteriu... [more]
A0A176W6Z5_MARPO5.860e-1552.73Cytochrome b5 heme-binding domain-containing prote... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10268contigE-fasciculatus_F_contig10268:1629..2306 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score134.8
Seed ortholog evalue1.4e-29
Seed eggNOG ortholog2880.D7G102
KEGG koko:K12418
EggNOG free text desc.Fatty acid desaturase
EggNOG OGs2SE5J@2759,COG3239@1
EC1.14.19.31
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01004
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionFatty acid desaturase, partial
Ec32 orthologEc-22_001490.1
Exons2
Model size192
Cds size192
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927528.0465667-CDS-E-fasciculatus_F_contig10268:1628..17011622927528.0465667-CDS-E-fasciculatus_F_contig10268:1628..1701Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10268 1629..1701 -
1695995579.504266-CDS-E-fasciculatus_F_contig10268:1628..17011695995579.504266-CDS-E-fasciculatus_F_contig10268:1628..1701Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10268 1629..1701 -
1622927528.0663807-CDS-E-fasciculatus_F_contig10268:2187..23061622927528.0663807-CDS-E-fasciculatus_F_contig10268:2187..2306Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10268 2188..2306 -
1695995579.5154316-CDS-E-fasciculatus_F_contig10268:2187..23061695995579.5154316-CDS-E-fasciculatus_F_contig10268:2187..2306Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10268 2188..2306 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10268.242.1prot_E-fasciculatus_F_contig10268.242.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig10268 1629..2306 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig10268.242.1

>prot_E-fasciculatus_F_contig10268.242.1 ID=prot_E-fasciculatus_F_contig10268.242.1|Name=mRNA_E-fasciculatus_F_contig10268.242.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=64bp
MGGINYQIEHHLFPSMSHMLYAEIAPIVKDACEEFSIPYNAHPTLWSAYA
SYLKHLVVCSETS*
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mRNA from alignment at E-fasciculatus_F_contig10268:1629..2306-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig10268.242.1 ID=mRNA_E-fasciculatus_F_contig10268.242.1|Name=mRNA_E-fasciculatus_F_contig10268.242.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=678bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10268:1629..2306- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGGCGGGATTAACTACCAGATCGAGCACCACCTTTTCCCCTCCATGTC TCACATGCTGTACGCCGAGATAGCCCCGATCGTCAAGGACGCCTGCGAGG AGTTCAGCATCCCGTACAAGTGAGAAAGAGAGAGAGAAAGGGGGTTGTTT TTTCTGTTCTCGTCTTGTGAACTGCTGCGTGATGTCCTTTCGCATCGTAA ACGCGTAAACCGCCTTCCACATCCGAAGGTCTGCCGATAACTCCTTGCCA AAGTTCCAGTCCTTTTGTGTCTGGTTGTGATCGCGCCTGCTGGGTCCCCT TGTTCCCGCATGGTATCTTACGGCTTCATTGCTGTCAGTTACCCATGGAT GTAACCGTGAGAATGAATGGCTAAACGCACACTAAACCACCCTCAACGTT CGCTCGATTGCTCCACTATACGATACCCCCGGGCCCTGAACTTTCGCTGT CACCTCCCTCCCCTATATGTCCGTCCCCCCTCGCCGGCACACCACTCCAT GTTGTACCCGATGGGCCCTGTCTACCGTATTTCTGCCCTTATAACGGCTT CTTGGTGACATACACGGCCCCCCGGCGTTTTCGTCTTTAAAATTGAAATT GGCAGCGCTCACCCGACCCTGTGGTCGGCCTACGCGTCGTACCTCAAGCA CCTCGTTGTCTGCAGCGAGACGAGCTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10268:1629..2306-

>mRNA_E-fasciculatus_F_contig10268.242.1 ID=mRNA_E-fasciculatus_F_contig10268.242.1|Name=mRNA_E-fasciculatus_F_contig10268.242.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=384bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10268:1629..2306- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGGCGGGATTAACTACCAGATCGAGCACCACCTTTTCCCCTCCATGTC
TCACATGCTGTACGCCGAGATAGCCCCGATCGTCAAGGACGCCTGCGAGG
AGTTCAGCATCCCGTACAAATGGGCGGGATTAACTACCAGATCGAGCACC
ACCTTTTCCCCTCCATGTCTCACATGCTGTACGCCGAGATAGCCCCGATC
GTCAAGGACGCCTGCGAGGAGTTCAGCATCCCGTACAACGCTCACCCGAC
CCTGTGGTCGGCCTACGCGTCGTACCTCAAGCACCTCGTTGTCTGCAGCG
AGACGAGCTGACGCTCACCCGACCCTGTGGTCGGCCTACGCGTCGTACCT
CAAGCACCTCGTTGTCTGCAGCGAGACGAGCTGA
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