mRNA_E-fasciculatus_F_contig10268.242.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig10268.242.1 vs. uniprot
Match: D7G102_ECTSI (Fatty acid desaturase, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G102_ECTSI) HSP 1 Score: 134 bits (336), Expect = 6.260e-40 Identity = 61/63 (96.83%), Postives = 62/63 (98.41%), Query Frame = 1
Query: 1 MGGINYQIEHHLFPSMSHMLYAEIAPIVKDACEEFSIPYNAHPTLWSAYASYLKHLVVCSETS 189
MGGINYQIEHHLFPSMSHMLYAEIAPIVKDACEEF+IPYNAHPTLWSAYASYLKHLVVCSE S
Sbjct: 1 MGGINYQIEHHLFPSMSHMLYAEIAPIVKDACEEFNIPYNAHPTLWSAYASYLKHLVVCSEMS 63
BLAST of mRNA_E-fasciculatus_F_contig10268.242.1 vs. uniprot
Match: A0A6H5KKY7_9PHAE (Cytochrome b5 heme-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKY7_9PHAE) HSP 1 Score: 131 bits (329), Expect = 4.280e-34 Identity = 59/63 (93.65%), Postives = 62/63 (98.41%), Query Frame = 1
Query: 1 MGGINYQIEHHLFPSMSHMLYAEIAPIVKDACEEFSIPYNAHPTLWSAYASYLKHLVVCSETS 189
MGGINYQIEHHLFPSMSHMLYAEIAPIVKDAC+EF+IPYNAHPTLW+AYASYLKHLVVCSE S
Sbjct: 629 MGGINYQIEHHLFPSMSHMLYAEIAPIVKDACKEFNIPYNAHPTLWTAYASYLKHLVVCSEMS 691
BLAST of mRNA_E-fasciculatus_F_contig10268.242.1 vs. uniprot
Match: A0A835YNM2_9STRA (FA_desaturase domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNM2_9STRA) HSP 1 Score: 95.5 bits (236), Expect = 9.650e-25 Identity = 41/55 (74.55%), Postives = 47/55 (85.45%), Query Frame = 1
Query: 4 GGINYQIEHHLFPSMSHMLYAEIAPIVKDACEEFSIPYNAHPTLWSAYASYLKHL 168
GGINYQIEHHLFPSM HM YA +AP+V+ C EF+IPY+AH TLWSAYASYL+ L
Sbjct: 2 GGINYQIEHHLFPSMCHMHYARVAPVVRATCAEFAIPYSAHDTLWSAYASYLRSL 56
BLAST of mRNA_E-fasciculatus_F_contig10268.242.1 vs. uniprot
Match: A0A4Y6Q468_9DELT (Acyl-CoA desaturase n=2 Tax=Persicimonas caeni TaxID=2292766 RepID=A0A4Y6Q468_9DELT) HSP 1 Score: 82.0 bits (201), Expect = 4.810e-17 Identity = 31/56 (55.36%), Postives = 44/56 (78.57%), Query Frame = 1
Query: 1 MGGINYQIEHHLFPSMSHMLYAEIAPIVKDACEEFSIPYNAHPTLWSAYASYLKHL 168
+GG+NYQ+EHHLFP +SH+ Y ++A IV++ CEEF +PY+A PTLW S+ +HL
Sbjct: 256 VGGLNYQVEHHLFPRISHIHYPKLAEIVRETCEEFGVPYHAQPTLWGGIRSHFRHL 311
BLAST of mRNA_E-fasciculatus_F_contig10268.242.1 vs. uniprot
Match: UPI0012E13FAB (acyl-CoA desaturase n=1 Tax=Sphingobacterium endophyticum TaxID=2546448 RepID=UPI0012E13FAB) HSP 1 Score: 79.0 bits (193), Expect = 7.980e-16 Identity = 31/52 (59.62%), Postives = 41/52 (78.85%), Query Frame = 1
Query: 1 MGGINYQIEHHLFPSMSHMLYAEIAPIVKDACEEFSIPYNAHPTLWSAYASY 156
+GG+N+Q+EHHLFP +SH+ Y E+ IVK C EFSIPYN +PT WSA+ S+
Sbjct: 293 LGGLNFQVEHHLFPKISHIHYPELNKIVKSTCREFSIPYNEYPTFWSAFNSH 344
BLAST of mRNA_E-fasciculatus_F_contig10268.242.1 vs. uniprot
Match: E0ZJ63_PICSI (Sphingolipid desaturase-like protein (Fragment) n=5 Tax=Picea sitchensis TaxID=3332 RepID=E0ZJ63_PICSI) HSP 1 Score: 75.5 bits (184), Expect = 1.220e-15 Identity = 28/55 (50.91%), Postives = 42/55 (76.36%), Query Frame = 1
Query: 4 GGINYQIEHHLFPSMSHMLYAEIAPIVKDACEEFSIPYNAHPTLWSAYASYLKHL 168
GG+NYQIEHHLFPS+ H+ Y I IVK+ C++F +PY+++P+ W+A ++ HL
Sbjct: 96 GGLNYQIEHHLFPSVCHLYYPSIHSIVKETCKDFDVPYHSYPSFWTALKAHFLHL 150
BLAST of mRNA_E-fasciculatus_F_contig10268.242.1 vs. uniprot
Match: A9UZE4_MONBE (Predicted protein n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9UZE4_MONBE) HSP 1 Score: 78.6 bits (192), Expect = 1.570e-15 Identity = 32/56 (57.14%), Postives = 43/56 (76.79%), Query Frame = 1
Query: 4 GGINYQIEHHLFPSMSHMLYAEIAPIVKDACEEFSIPYNAHPTLWSAYASYLKHLV 171
GG+NYQIEHHLFP+++H + I PIVK C+++S+PYN PTL+ A+ YL HLV
Sbjct: 385 GGLNYQIEHHLFPTVNHCHHRHIQPIVKAVCDKYSVPYNYTPTLYGAFRKYLDHLV 440
BLAST of mRNA_E-fasciculatus_F_contig10268.242.1 vs. uniprot
Match: A0A522T616_9BACT (Acyl-CoA desaturase n=1 Tax=Chitinophagaceae bacterium TaxID=1869212 RepID=A0A522T616_9BACT) HSP 1 Score: 77.4 bits (189), Expect = 3.150e-15 Identity = 32/56 (57.14%), Postives = 44/56 (78.57%), Query Frame = 1
Query: 1 MGGINYQIEHHLFPSMSHMLYAEIAPIVKDACEEFSIPYNAHPTLWSAYASYLKHL 168
+GG+N+QIEHHLFP +SH+ Y I+P+VK+ C EF++PY A+PT A AS+L HL
Sbjct: 294 LGGLNFQIEHHLFPRVSHVHYRAISPLVKETCREFNLPYVAYPTFAKAVASHLLHL 349
BLAST of mRNA_E-fasciculatus_F_contig10268.242.1 vs. uniprot
Match: A0A7C3KU47_9BACT (Acyl-CoA desaturase n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A7C3KU47_9BACT) HSP 1 Score: 76.6 bits (187), Expect = 5.720e-15 Identity = 32/55 (58.18%), Postives = 42/55 (76.36%), Query Frame = 1
Query: 4 GGINYQIEHHLFPSMSHMLYAEIAPIVKDACEEFSIPYNAHPTLWSAYASYLKHL 168
GG+NYQIEHHLFP +SH+ Y I+ +VKD C +FSIPY +PT+ SA S++ HL
Sbjct: 297 GGLNYQIEHHLFPKISHVHYPGISKVVKDVCRQFSIPYIEYPTMMSALRSHIAHL 351
BLAST of mRNA_E-fasciculatus_F_contig10268.242.1 vs. uniprot
Match: A0A176W6Z5_MARPO (Cytochrome b5 heme-binding domain-containing protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A176W6Z5_MARPO) HSP 1 Score: 77.0 bits (188), Expect = 5.860e-15 Identity = 29/55 (52.73%), Postives = 42/55 (76.36%), Query Frame = 1
Query: 4 GGINYQIEHHLFPSMSHMLYAEIAPIVKDACEEFSIPYNAHPTLWSAYASYLKHL 168
GG+N+QIEHHLFP + H+ Y I PIVK C+EF++PY ++PT W+A ++ +HL
Sbjct: 602 GGLNHQIEHHLFPGVCHVHYPSIQPIVKATCDEFNVPYTSYPTFWAALRAHFQHL 656 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10268.242.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig10268.242.1 >prot_E-fasciculatus_F_contig10268.242.1 ID=prot_E-fasciculatus_F_contig10268.242.1|Name=mRNA_E-fasciculatus_F_contig10268.242.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=64bp MGGINYQIEHHLFPSMSHMLYAEIAPIVKDACEEFSIPYNAHPTLWSAYAback to top mRNA from alignment at E-fasciculatus_F_contig10268:1629..2306- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig10268.242.1 ID=mRNA_E-fasciculatus_F_contig10268.242.1|Name=mRNA_E-fasciculatus_F_contig10268.242.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=678bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10268:1629..2306- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10268:1629..2306- >mRNA_E-fasciculatus_F_contig10268.242.1 ID=mRNA_E-fasciculatus_F_contig10268.242.1|Name=mRNA_E-fasciculatus_F_contig10268.242.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=384bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10268:1629..2306- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |