mRNA_E-fasciculatus_F_contig10264.241.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig10264.241.1
Unique NamemRNA_E-fasciculatus_F_contig10264.241.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig10264.241.1 vs. uniprot
Match: A0A6H5KX57_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KX57_9PHAE)

HSP 1 Score: 160 bits (404), Expect = 1.390e-43
Identity = 82/94 (87.23%), Postives = 85/94 (90.43%), Query Frame = 1
Query:   37 APAM-LRGYQSRIASTCEHDNTIVVLPTGSGKTLIAAEVIKRLEPPALFLVPTCLLVDQQAEALGSWTGLSVAKYRGGAGLPPSTFKILVSTPQ 315
            APA  LRGYQSRIA+ C HDNTIVVLPTGSGKTL+AAE IKRL PPALFLVPT L+VDQQAEALGSWTGLSV KY GGAGLPPSTFKILVSTPQ
Sbjct:   19 APAKTLRGYQSRIANKCLHDNTIVVLPTGSGKTLLAAEAIKRLGPPALFLVPTRLMVDQQAEALGSWTGLSVTKYMGGAGLPPSTFKILVSTPQ 112          
BLAST of mRNA_E-fasciculatus_F_contig10264.241.1 vs. uniprot
Match: A0A7S4V2U7_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4V2U7_9DINO)

HSP 1 Score: 112 bits (280), Expect = 1.050e-26
Identity = 60/90 (66.67%), Postives = 71/90 (78.89%), Query Frame = 1
Query:   49 LRGYQSRIASTCEHD-NTIVVLPTGSGKTLIAAEVIKRLEPPALFLVPTCLLVDQQAEALGSWTGLSVAKYRGGAGLPPSTFKILVSTPQ 315
            LR YQSRI    E   NT+VVLPTG+GKTLIAAE+IKR+    LFLVPTCLLV+QQA+A+G WT LSV +Y GGA LP S F++LVSTP+
Sbjct:    3 LRPYQSRIVGQAEASGNTVVVLPTGAGKTLIAAELIKRVGGTCLFLVPTCLLVEQQAKAVGKWTKLSVGEYMGGATLP-SRFQVLVSTPK 91          
BLAST of mRNA_E-fasciculatus_F_contig10264.241.1 vs. uniprot
Match: A0A6H5L3L3_9PHAE (Helicase ATP-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3L3_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 5.260e-26
Identity = 56/89 (62.92%), Postives = 66/89 (74.16%), Query Frame = 1
Query:   49 LRGYQSRIASTCEHDNTIVVLPTGSGKTLIAAEVIKRLEPPALFLVPTCLLVDQQAEALGSWT-GLSVAKYRGGAGLPPSTFKILVSTP 312
            LR YQSRIA  CE DNT+VVLPTGSGKT+IAAEVIK+  P ALFLVPT  LV QQA+ L +WT    +A+ RGG  L   +F +LV+TP
Sbjct:   48 LRPYQSRIARACERDNTLVVLPTGSGKTIIAAEVIKQRPPRALFLVPTRHLVKQQAKVLRAWTFRRRIAQLRGGDELQKKSFDVLVATP 136          
BLAST of mRNA_E-fasciculatus_F_contig10264.241.1 vs. uniprot
Match: A0A812RBN0_9DINO (DCL2A protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812RBN0_9DINO)

HSP 1 Score: 109 bits (273), Expect = 9.610e-26
Identity = 57/90 (63.33%), Postives = 69/90 (76.67%), Query Frame = 1
Query:   49 LRGYQSRIASTC-EHDNTIVVLPTGSGKTLIAAEVIKRLEPPALFLVPTCLLVDQQAEALGSWTGLSVAKYRGGAGLPPSTFKILVSTPQ 315
            LRGYQ RI        NTIVVLPTG+GKTLIA+E++KRL P  LFLVPTCLLV+QQA+A+  WTGL VA++ GGA +P   F +LVSTP+
Sbjct:   19 LRGYQQRIVDDALTTGNTIVVLPTGAGKTLIASELMKRLGPGCLFLVPTCLLVEQQAKAIREWTGLRVAEFMGGASMPQQ-FDVLVSTPK 107          
BLAST of mRNA_E-fasciculatus_F_contig10264.241.1 vs. uniprot
Match: A0A1Q9EU77_SYMMI (Endoribonuclease Dicer-like 2a n=3 Tax=Symbiodinium TaxID=2949 RepID=A0A1Q9EU77_SYMMI)

HSP 1 Score: 108 bits (269), Expect = 3.320e-25
Identity = 55/90 (61.11%), Postives = 70/90 (77.78%), Query Frame = 1
Query:   49 LRGYQSRIASTC-EHDNTIVVLPTGSGKTLIAAEVIKRLEPPALFLVPTCLLVDQQAEALGSWTGLSVAKYRGGAGLPPSTFKILVSTPQ 315
            LR YQ+R+        NT+VVLPTG+GKTLIA+E+I+RL PP LFLVPTCLLV+QQA+A+  WTGL VA++ GG  LP + F +LVSTP+
Sbjct:    3 LRAYQARLLEEILASGNTLVVLPTGAGKTLIASELIRRLGPPCLFLVPTCLLVEQQAKAVRDWTGLQVAEFMGGMSLP-AHFDVLVSTPK 91          
BLAST of mRNA_E-fasciculatus_F_contig10264.241.1 vs. uniprot
Match: A0A812TEW1_9DINO (DCL2A protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812TEW1_9DINO)

HSP 1 Score: 108 bits (269), Expect = 3.670e-25
Identity = 55/90 (61.11%), Postives = 70/90 (77.78%), Query Frame = 1
Query:   49 LRGYQSRIASTC-EHDNTIVVLPTGSGKTLIAAEVIKRLEPPALFLVPTCLLVDQQAEALGSWTGLSVAKYRGGAGLPPSTFKILVSTPQ 315
            LR YQ+R+        NT+VVLPTG+GKTLIA+E+I+RL PP LFLVPTCLLV+QQA+A+  WTGL VA++ GG  LP + F +LVSTP+
Sbjct:    3 LRAYQARLLEEILASGNTLVVLPTGAGKTLIASELIRRLGPPCLFLVPTCLLVEQQAKAVRDWTGLQVAEFMGGMSLP-AHFDVLVSTPK 91          
BLAST of mRNA_E-fasciculatus_F_contig10264.241.1 vs. uniprot
Match: A0A2V3IZ19_9FLOR (Endoribonuclease Dicer-like n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IZ19_9FLOR)

HSP 1 Score: 93.2 bits (230), Expect = 6.080e-20
Identity = 49/87 (56.32%), Postives = 61/87 (70.11%), Query Frame = 1
Query:   52 RGYQSRIASTCEHDNTIVVLPTGSGKTLIAAEVIKRLEPPALFLVPTCLLVDQQAEALGSWTGLSVAKYRGGAGLPPSTFKILVSTP 312
            R YQ RI       NT+VVLPTG+GKTLIA EVI+ L PPALF+VPT LLV QQ+EA+ + T   VA+  GG  LP S + ++V+TP
Sbjct:   15 RPYQQRIIDQAVLKNTLVVLPTGAGKTLIATEVIRTLSPPALFIVPTVLLVKQQSEAIAAHTNYKVAQLHGGKSLPHS-WHVVVATP 100          
BLAST of mRNA_E-fasciculatus_F_contig10264.241.1 vs. uniprot
Match: A0A812IWI1_SYMPI (CFAP61 protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812IWI1_SYMPI)

HSP 1 Score: 91.7 bits (226), Expect = 2.430e-19
Identity = 50/88 (56.82%), Postives = 61/88 (69.32%), Query Frame = 1
Query:   55 GYQSRIASTCEH-DNTIVVLPTGSGKTLIAAEVIKRLEPPALFLVPTCLLVDQQAEALGSWTGLSVAKYRGGAGLPPSTFKILVSTPQ 315
            GYQ RI +      N IVVLPTG+GKTLIA+E+I  L PP L  VPTC+LV+QQA A   WTGL VA++ GG  +P   F +LVSTP+
Sbjct: 1997 GYQERIVTEVRAAGNAIVVLPTGAGKTLIASELITGLGPPCL--VPTCMLVEQQARAAREWTGLQVAEFMGGVSVP-QRFDVLVSTPK 2081          
BLAST of mRNA_E-fasciculatus_F_contig10264.241.1 vs. uniprot
Match: A0A836C8Q2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8Q2_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 5.780e-14
Identity = 47/93 (50.54%), Postives = 58/93 (62.37%), Query Frame = 1
Query:   49 LRGYQSRIASTCEHDNTIVVLPTGSGKTLIAAEVI-----KRLEPPALFLVPTCLLVDQQAEALGSWTGLSVAKYRGGAGLPPSTFKILVSTP 312
            LRGYQ RI       N +VVLPTG+GKTL+AAE I     K+    ALFLVPT  LV QQA+ +   TGL VA+ +GG  L     ++LV+TP
Sbjct:   28 LRGYQERICMDMAKGNHLVVLPTGAGKTLVAAECIAAELWKQPTKRALFLVPTRNLVHQQAQVIEGETGLDVAELKGGNALRIGC-RVLVATP 119          
BLAST of mRNA_E-fasciculatus_F_contig10264.241.1 vs. uniprot
Match: A0A0L0FPA9_9EUKA (Helicase ATP-binding domain-containing protein (Fragment) n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FPA9_9EUKA)

HSP 1 Score: 68.9 bits (167), Expect = 1.060e-12
Identity = 39/78 (50.00%), Postives = 46/78 (58.97%), Query Frame = 1
Query:   49 LRGYQSRIASTCEHDNTIVVLPTGSGKTLIAAEVIKRL-----EPPALFLVPTCLLVDQQAEALGSWTGLSVAKYRGG 267
            LRGYQ RI +     N+IVVLPTG+GKTLIA  +I  L         LF+VPT  L+DQQA  +   TGL V    GG
Sbjct:   18 LRGYQERIVAEASERNSIVVLPTGTGKTLIACALILHLMRTRSARKTLFIVPTIALMDQQAAVIARETGLGVITMGGG 95          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10264.241.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KX57_9PHAE1.390e-4387.23Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S4V2U7_9DINO1.050e-2666.67Hypothetical protein n=1 Tax=Alexandrium monilatum... [more]
A0A6H5L3L3_9PHAE5.260e-2662.92Helicase ATP-binding domain-containing protein n=1... [more]
A0A812RBN0_9DINO9.610e-2663.33DCL2A protein n=1 Tax=Symbiodinium natans TaxID=87... [more]
A0A1Q9EU77_SYMMI3.320e-2561.11Endoribonuclease Dicer-like 2a n=3 Tax=Symbiodiniu... [more]
A0A812TEW1_9DINO3.670e-2561.11DCL2A protein n=1 Tax=Symbiodinium sp. KB8 TaxID=2... [more]
A0A2V3IZ19_9FLOR6.080e-2056.32Endoribonuclease Dicer-like n=1 Tax=Gracilariopsis... [more]
A0A812IWI1_SYMPI2.430e-1956.82CFAP61 protein n=1 Tax=Symbiodinium pilosum TaxID=... [more]
A0A836C8Q2_9STRA5.780e-1450.54Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A0L0FPA9_9EUKA1.060e-1250.00Helicase ATP-binding domain-containing protein (Fr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10264contigE-fasciculatus_F_contig10264:3110..3427 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score172.2
Seed ortholog evalue1.3e-40
Seed eggNOG ortholog2880.D7FQZ7
KEGG koko:K11592
KEGG Pathwayko05206,map05206
EggNOG free text desc.helicase activity
EggNOG OGsCOG0571@1,COG1111@1,KOG0354@2759,KOG0701@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03036
Hectar predicted targeting categoryother localisation
Exons1
Model size318
Cds size303
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927527.978488-UTR-E-fasciculatus_F_contig10264:3109..31241622927527.978488-UTR-E-fasciculatus_F_contig10264:3109..3124Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10264 3110..3124 +
1695995579.4806454-UTR-E-fasciculatus_F_contig10264:3109..31241695995579.4806454-UTR-E-fasciculatus_F_contig10264:3109..3124Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10264 3110..3124 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927527.9960775-CDS-E-fasciculatus_F_contig10264:3124..34271622927527.9960775-CDS-E-fasciculatus_F_contig10264:3124..3427Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10264 3125..3427 +
1695995579.4934645-CDS-E-fasciculatus_F_contig10264:3124..34271695995579.4934645-CDS-E-fasciculatus_F_contig10264:3124..3427Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10264 3125..3427 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10264.241.1prot_E-fasciculatus_F_contig10264.241.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig10264 3125..3427 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig10264.241.1

>prot_E-fasciculatus_F_contig10264.241.1 ID=prot_E-fasciculatus_F_contig10264.241.1|Name=mRNA_E-fasciculatus_F_contig10264.241.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=101bp
MATGGGPAPAMLRGYQSRIASTCEHDNTIVVLPTGSGKTLIAAEVIKRLE
PPALFLVPTCLLVDQQAEALGSWTGLSVAKYRGGAGLPPSTFKILVSTPQ
V
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mRNA from alignment at E-fasciculatus_F_contig10264:3110..3427+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig10264.241.1 ID=mRNA_E-fasciculatus_F_contig10264.241.1|Name=mRNA_E-fasciculatus_F_contig10264.241.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=318bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10264:3110..3427+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GACCCACTGCATGCGATGGCGACAGGAGGGGGACCAGCCCCGGCCATGCT GCGCGGCTATCAGTCCCGCATAGCCAGCACGTGCGAGCACGACAACACGA TCGTCGTCCTTCCGACCGGATCAGGCAAGACCCTCATCGCGGCCGAGGTC ATCAAGCGATTGGAGCCCCCGGCCCTCTTCCTCGTGCCGACGTGCCTCTT GGTGGACCAGCAGGCCGAAGCCCTCGGCTCCTGGACCGGGCTCAGCGTGG CCAAGTACAGGGGCGGGGCGGGACTGCCGCCGTCGACGTTCAAGATCTTA GTGAGCACTCCACAGGTG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10264:3110..3427+

>mRNA_E-fasciculatus_F_contig10264.241.1 ID=mRNA_E-fasciculatus_F_contig10264.241.1|Name=mRNA_E-fasciculatus_F_contig10264.241.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=606bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10264:3110..3427+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCGACAGGAGGGGGACCAGCCCCGGCCATGCTGCGCGGCTATCAGTC
CCGCATAGCCAGCACGTGCGAGCACGACAACACGATCGTCGTCCTTCCGA
CCGGATCAGGCAAGACCCTCATCGCGGCCGAGGTCATCAAGCGATTGGAG
CCCCCGGCCCTCTTCCTCGTGCCGACGTGCCTCTTGGTGGACCAGCAGGC
CGAAGCCCTCGGCTCCTGGACCGGGCTCAGCGTGGCCAAGTACAGGGGCG
GGGCGGGACTGCCGCCGTCGACGTTCAAGATCTTAGTGAGCACTCCACAG
GTGATGGCGACAGGAGGGGGACCAGCCCCGGCCATGCTGCGCGGCTATCA
GTCCCGCATAGCCAGCACGTGCGAGCACGACAACACGATCGTCGTCCTTC
CGACCGGATCAGGCAAGACCCTCATCGCGGCCGAGGTCATCAAGCGATTG
GAGCCCCCGGCCCTCTTCCTCGTGCCGACGTGCCTCTTGGTGGACCAGCA
GGCCGAAGCCCTCGGCTCCTGGACCGGGCTCAGCGTGGCCAAGTACAGGG
GCGGGGCGGGACTGCCGCCGTCGACGTTCAAGATCTTAGTGAGCACTCCA
CAGGTG
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