mRNA_E-fasciculatus_F_contig10264.241.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig10264.241.1 vs. uniprot
Match: A0A6H5KX57_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KX57_9PHAE) HSP 1 Score: 160 bits (404), Expect = 1.390e-43 Identity = 82/94 (87.23%), Postives = 85/94 (90.43%), Query Frame = 1
Query: 37 APAM-LRGYQSRIASTCEHDNTIVVLPTGSGKTLIAAEVIKRLEPPALFLVPTCLLVDQQAEALGSWTGLSVAKYRGGAGLPPSTFKILVSTPQ 315
APA LRGYQSRIA+ C HDNTIVVLPTGSGKTL+AAE IKRL PPALFLVPT L+VDQQAEALGSWTGLSV KY GGAGLPPSTFKILVSTPQ
Sbjct: 19 APAKTLRGYQSRIANKCLHDNTIVVLPTGSGKTLLAAEAIKRLGPPALFLVPTRLMVDQQAEALGSWTGLSVTKYMGGAGLPPSTFKILVSTPQ 112
BLAST of mRNA_E-fasciculatus_F_contig10264.241.1 vs. uniprot
Match: A0A7S4V2U7_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4V2U7_9DINO) HSP 1 Score: 112 bits (280), Expect = 1.050e-26 Identity = 60/90 (66.67%), Postives = 71/90 (78.89%), Query Frame = 1
Query: 49 LRGYQSRIASTCEHD-NTIVVLPTGSGKTLIAAEVIKRLEPPALFLVPTCLLVDQQAEALGSWTGLSVAKYRGGAGLPPSTFKILVSTPQ 315
LR YQSRI E NT+VVLPTG+GKTLIAAE+IKR+ LFLVPTCLLV+QQA+A+G WT LSV +Y GGA LP S F++LVSTP+
Sbjct: 3 LRPYQSRIVGQAEASGNTVVVLPTGAGKTLIAAELIKRVGGTCLFLVPTCLLVEQQAKAVGKWTKLSVGEYMGGATLP-SRFQVLVSTPK 91
BLAST of mRNA_E-fasciculatus_F_contig10264.241.1 vs. uniprot
Match: A0A6H5L3L3_9PHAE (Helicase ATP-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3L3_9PHAE) HSP 1 Score: 104 bits (259), Expect = 5.260e-26 Identity = 56/89 (62.92%), Postives = 66/89 (74.16%), Query Frame = 1
Query: 49 LRGYQSRIASTCEHDNTIVVLPTGSGKTLIAAEVIKRLEPPALFLVPTCLLVDQQAEALGSWT-GLSVAKYRGGAGLPPSTFKILVSTP 312
LR YQSRIA CE DNT+VVLPTGSGKT+IAAEVIK+ P ALFLVPT LV QQA+ L +WT +A+ RGG L +F +LV+TP
Sbjct: 48 LRPYQSRIARACERDNTLVVLPTGSGKTIIAAEVIKQRPPRALFLVPTRHLVKQQAKVLRAWTFRRRIAQLRGGDELQKKSFDVLVATP 136
BLAST of mRNA_E-fasciculatus_F_contig10264.241.1 vs. uniprot
Match: A0A812RBN0_9DINO (DCL2A protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812RBN0_9DINO) HSP 1 Score: 109 bits (273), Expect = 9.610e-26 Identity = 57/90 (63.33%), Postives = 69/90 (76.67%), Query Frame = 1
Query: 49 LRGYQSRIASTC-EHDNTIVVLPTGSGKTLIAAEVIKRLEPPALFLVPTCLLVDQQAEALGSWTGLSVAKYRGGAGLPPSTFKILVSTPQ 315
LRGYQ RI NTIVVLPTG+GKTLIA+E++KRL P LFLVPTCLLV+QQA+A+ WTGL VA++ GGA +P F +LVSTP+
Sbjct: 19 LRGYQQRIVDDALTTGNTIVVLPTGAGKTLIASELMKRLGPGCLFLVPTCLLVEQQAKAIREWTGLRVAEFMGGASMPQQ-FDVLVSTPK 107
BLAST of mRNA_E-fasciculatus_F_contig10264.241.1 vs. uniprot
Match: A0A1Q9EU77_SYMMI (Endoribonuclease Dicer-like 2a n=3 Tax=Symbiodinium TaxID=2949 RepID=A0A1Q9EU77_SYMMI) HSP 1 Score: 108 bits (269), Expect = 3.320e-25 Identity = 55/90 (61.11%), Postives = 70/90 (77.78%), Query Frame = 1
Query: 49 LRGYQSRIASTC-EHDNTIVVLPTGSGKTLIAAEVIKRLEPPALFLVPTCLLVDQQAEALGSWTGLSVAKYRGGAGLPPSTFKILVSTPQ 315
LR YQ+R+ NT+VVLPTG+GKTLIA+E+I+RL PP LFLVPTCLLV+QQA+A+ WTGL VA++ GG LP + F +LVSTP+
Sbjct: 3 LRAYQARLLEEILASGNTLVVLPTGAGKTLIASELIRRLGPPCLFLVPTCLLVEQQAKAVRDWTGLQVAEFMGGMSLP-AHFDVLVSTPK 91
BLAST of mRNA_E-fasciculatus_F_contig10264.241.1 vs. uniprot
Match: A0A812TEW1_9DINO (DCL2A protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812TEW1_9DINO) HSP 1 Score: 108 bits (269), Expect = 3.670e-25 Identity = 55/90 (61.11%), Postives = 70/90 (77.78%), Query Frame = 1
Query: 49 LRGYQSRIASTC-EHDNTIVVLPTGSGKTLIAAEVIKRLEPPALFLVPTCLLVDQQAEALGSWTGLSVAKYRGGAGLPPSTFKILVSTPQ 315
LR YQ+R+ NT+VVLPTG+GKTLIA+E+I+RL PP LFLVPTCLLV+QQA+A+ WTGL VA++ GG LP + F +LVSTP+
Sbjct: 3 LRAYQARLLEEILASGNTLVVLPTGAGKTLIASELIRRLGPPCLFLVPTCLLVEQQAKAVRDWTGLQVAEFMGGMSLP-AHFDVLVSTPK 91
BLAST of mRNA_E-fasciculatus_F_contig10264.241.1 vs. uniprot
Match: A0A2V3IZ19_9FLOR (Endoribonuclease Dicer-like n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IZ19_9FLOR) HSP 1 Score: 93.2 bits (230), Expect = 6.080e-20 Identity = 49/87 (56.32%), Postives = 61/87 (70.11%), Query Frame = 1
Query: 52 RGYQSRIASTCEHDNTIVVLPTGSGKTLIAAEVIKRLEPPALFLVPTCLLVDQQAEALGSWTGLSVAKYRGGAGLPPSTFKILVSTP 312
R YQ RI NT+VVLPTG+GKTLIA EVI+ L PPALF+VPT LLV QQ+EA+ + T VA+ GG LP S + ++V+TP
Sbjct: 15 RPYQQRIIDQAVLKNTLVVLPTGAGKTLIATEVIRTLSPPALFIVPTVLLVKQQSEAIAAHTNYKVAQLHGGKSLPHS-WHVVVATP 100
BLAST of mRNA_E-fasciculatus_F_contig10264.241.1 vs. uniprot
Match: A0A812IWI1_SYMPI (CFAP61 protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812IWI1_SYMPI) HSP 1 Score: 91.7 bits (226), Expect = 2.430e-19 Identity = 50/88 (56.82%), Postives = 61/88 (69.32%), Query Frame = 1
Query: 55 GYQSRIASTCEH-DNTIVVLPTGSGKTLIAAEVIKRLEPPALFLVPTCLLVDQQAEALGSWTGLSVAKYRGGAGLPPSTFKILVSTPQ 315
GYQ RI + N IVVLPTG+GKTLIA+E+I L PP L VPTC+LV+QQA A WTGL VA++ GG +P F +LVSTP+
Sbjct: 1997 GYQERIVTEVRAAGNAIVVLPTGAGKTLIASELITGLGPPCL--VPTCMLVEQQARAAREWTGLQVAEFMGGVSVP-QRFDVLVSTPK 2081
BLAST of mRNA_E-fasciculatus_F_contig10264.241.1 vs. uniprot
Match: A0A836C8Q2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8Q2_9STRA) HSP 1 Score: 76.3 bits (186), Expect = 5.780e-14 Identity = 47/93 (50.54%), Postives = 58/93 (62.37%), Query Frame = 1
Query: 49 LRGYQSRIASTCEHDNTIVVLPTGSGKTLIAAEVI-----KRLEPPALFLVPTCLLVDQQAEALGSWTGLSVAKYRGGAGLPPSTFKILVSTP 312
LRGYQ RI N +VVLPTG+GKTL+AAE I K+ ALFLVPT LV QQA+ + TGL VA+ +GG L ++LV+TP
Sbjct: 28 LRGYQERICMDMAKGNHLVVLPTGAGKTLVAAECIAAELWKQPTKRALFLVPTRNLVHQQAQVIEGETGLDVAELKGGNALRIGC-RVLVATP 119
BLAST of mRNA_E-fasciculatus_F_contig10264.241.1 vs. uniprot
Match: A0A0L0FPA9_9EUKA (Helicase ATP-binding domain-containing protein (Fragment) n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FPA9_9EUKA) HSP 1 Score: 68.9 bits (167), Expect = 1.060e-12 Identity = 39/78 (50.00%), Postives = 46/78 (58.97%), Query Frame = 1
Query: 49 LRGYQSRIASTCEHDNTIVVLPTGSGKTLIAAEVIKRL-----EPPALFLVPTCLLVDQQAEALGSWTGLSVAKYRGG 267
LRGYQ RI + N+IVVLPTG+GKTLIA +I L LF+VPT L+DQQA + TGL V GG
Sbjct: 18 LRGYQERIVAEASERNSIVVLPTGTGKTLIACALILHLMRTRSARKTLFIVPTIALMDQQAAVIARETGLGVITMGGG 95 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10264.241.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig10264.241.1 >prot_E-fasciculatus_F_contig10264.241.1 ID=prot_E-fasciculatus_F_contig10264.241.1|Name=mRNA_E-fasciculatus_F_contig10264.241.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=101bp MATGGGPAPAMLRGYQSRIASTCEHDNTIVVLPTGSGKTLIAAEVIKRLEback to top mRNA from alignment at E-fasciculatus_F_contig10264:3110..3427+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig10264.241.1 ID=mRNA_E-fasciculatus_F_contig10264.241.1|Name=mRNA_E-fasciculatus_F_contig10264.241.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=318bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10264:3110..3427+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10264:3110..3427+ >mRNA_E-fasciculatus_F_contig10264.241.1 ID=mRNA_E-fasciculatus_F_contig10264.241.1|Name=mRNA_E-fasciculatus_F_contig10264.241.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=606bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10264:3110..3427+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |