mRNA_E-fasciculatus_F_contig1026.240.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1026.240.1 vs. uniprot
Match: A0A6H5LCC1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCC1_9PHAE) HSP 1 Score: 221 bits (563), Expect = 7.680e-70 Identity = 103/104 (99.04%), Postives = 104/104 (100.00%), Query Frame = 1
Query: 1 ETTFLTKQPDCIKFGKMRHYQLEGLNWMIRLNDNGINGILADEMGLGKTLQSISVLAYMHEYKGISGPHIILVPKSTLSNWLNELKRWCPALRPLRFHGTRASF 312
ETTFLTKQPDCIKFGKMRHYQLEGLNWMIRLNDNGINGILADEMGLGKTLQSISVLAYMHEYKG+SGPHIILVPKSTLSNWLNELKRWCPALRPLRFHGTRASF
Sbjct: 249 ETTFLTKQPDCIKFGKMRHYQLEGLNWMIRLNDNGINGILADEMGLGKTLQSISVLAYMHEYKGVSGPHIILVPKSTLSNWLNELKRWCPALRPLRFHGTRASF 352
BLAST of mRNA_E-fasciculatus_F_contig1026.240.1 vs. uniprot
Match: D7FV68_ECTSI (Probable chromatin remodelling complex ATPase chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV68_ECTSI) HSP 1 Score: 216 bits (550), Expect = 5.310e-63 Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 1
Query: 1 ETTFLTKQPDCIKFGKMRHYQLEGLNWMIRLNDNGINGILADEMGLGKTLQSISVLAYMHEYKGISGPHIILVPKSTLSNWLNELKRWCPALRPLRFHGTR 303
ETTFLTKQPDCIKFGKMRHYQLEGLNWMIRLNDNGINGILADEMGLGKTLQSISVLAYMHEYKGISGPHIILVPKSTLSNWLNELKRWCPALRPLRFHGTR
Sbjct: 246 ETTFLTKQPDCIKFGKMRHYQLEGLNWMIRLNDNGINGILADEMGLGKTLQSISVLAYMHEYKGISGPHIILVPKSTLSNWLNELKRWCPALRPLRFHGTR 346
BLAST of mRNA_E-fasciculatus_F_contig1026.240.1 vs. uniprot
Match: A0A835YGX5_9STRA (Putative chromatin remodelling complex ATPase chain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGX5_9STRA) HSP 1 Score: 183 bits (465), Expect = 1.500e-51 Identity = 83/99 (83.84%), Postives = 90/99 (90.91%), Query Frame = 1
Query: 7 TFLTKQPDCIKFGKMRHYQLEGLNWMIRLNDNGINGILADEMGLGKTLQSISVLAYMHEYKGISGPHIILVPKSTLSNWLNELKRWCPALRPLRFHGTR 303
TFLT QP CI FGK+RHYQLEGLNWMIRLN NGINGILADEMGLGKTLQSIS+LAYM+E+KGI GPHI+LVPKSTLSNW+NE RWCP LR +RFHGTR
Sbjct: 271 TFLTAQPACITFGKLRHYQLEGLNWMIRLNANGINGILADEMGLGKTLQSISILAYMYEHKGIRGPHIVLVPKSTLSNWMNEFARWCPVLRAIRFHGTR 369
BLAST of mRNA_E-fasciculatus_F_contig1026.240.1 vs. uniprot
Match: A0A7S3UY81_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UY81_HETAK) HSP 1 Score: 163 bits (412), Expect = 3.490e-50 Identity = 73/96 (76.04%), Postives = 85/96 (88.54%), Query Frame = 1
Query: 7 TFLTKQPDCIKFGKMRHYQLEGLNWMIRLNDNGINGILADEMGLGKTLQSISVLAYMHEYKGISGPHIILVPKSTLSNWLNELKRWCPALRPLRFH 294
TFL QP CI+ G MR YQLEGLNWMIRL +NGINGILADEMGLGKTLQSIS+LAYM EYK ++GPH++L+PKSTLSNW+NE KR+CPA+R +RFH
Sbjct: 11 TFLLTQPACIQHGTMRPYQLEGLNWMIRLQENGINGILADEMGLGKTLQSISILAYMREYKNVTGPHLVLLPKSTLSNWMNEFKRFCPAIRVVRFH 106
BLAST of mRNA_E-fasciculatus_F_contig1026.240.1 vs. uniprot
Match: A0A7S2HGM0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HGM0_9STRA) HSP 1 Score: 174 bits (440), Expect = 2.230e-49 Identity = 78/101 (77.23%), Postives = 86/101 (85.15%), Query Frame = 1
Query: 1 ETTFLTKQPDCIKFGKMRHYQLEGLNWMIRLNDNGINGILADEMGLGKTLQSISVLAYMHEYKGISGPHIILVPKSTLSNWLNELKRWCPALRPLRFHGTR 303
E T+L QP CIKFGKMR YQLEGLNWMIRL +NG+NGILADEMGLGKTLQSIS+L Y EY + GPH+ILVPKSTLSNW+NE KRWCP L PLRFHGT+
Sbjct: 190 EPTYLAIQPSCIKFGKMRPYQLEGLNWMIRLQENGVNGILADEMGLGKTLQSISILGYTAEYTDVRGPHLILVPKSTLSNWMNEFKRWCPMLNPLRFHGTK 290
BLAST of mRNA_E-fasciculatus_F_contig1026.240.1 vs. uniprot
Match: A0A7S3UXF4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UXF4_HETAK) HSP 1 Score: 161 bits (408), Expect = 7.700e-49 Identity = 72/99 (72.73%), Postives = 83/99 (83.84%), Query Frame = 1
Query: 7 TFLTKQPDCIKFGKMRHYQLEGLNWMIRLNDNGINGILADEMGLGKTLQSISVLAYMHEYKGISGPHIILVPKSTLSNWLNELKRWCPALRPLRFHGTR 303
TFL QP CI+ G MR YQLEGLNWMIRL +NGINGILADEMGLGKTLQSIS+L Y EY+ I GPHI+LVPKSTLSNW+NE +RWCP +R ++FHG +
Sbjct: 11 TFLLTQPACIQHGTMRPYQLEGLNWMIRLQENGINGILADEMGLGKTLQSISILGYTMEYRSIRGPHIVLVPKSTLSNWMNEFQRWCPDIRAIKFHGNK 109
BLAST of mRNA_E-fasciculatus_F_contig1026.240.1 vs. uniprot
Match: A0A7S2LA35_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LA35_9STRA) HSP 1 Score: 159 bits (402), Expect = 7.650e-47 Identity = 74/110 (67.27%), Postives = 87/110 (79.09%), Query Frame = 1
Query: 1 ETTFLTKQPDCIKFGKMRHYQLEGLNWMIRLNDNGINGILADEMGLGKTLQSISVLAYMHEYK----GISGPHIILVPKSTLSNWLNELKRWCPALRPLRFHGTRASFDQ 318
E TFLT QP + FGKMR YQLEGLNWMIRL ++G+NGILADEMGLGKTLQSIS+L YM EY G +GPH+I+VPKSTLSNW+NEL RW P L+ +RFHG + +Q
Sbjct: 73 EATFLTAQPSTLGFGKMRPYQLEGLNWMIRLQEHGVNGILADEMGLGKTLQSISILVYMKEYASEEDGATGPHLIVVPKSTLSNWMNELNRWAPTLKAVRFHGNKEEREQ 182
BLAST of mRNA_E-fasciculatus_F_contig1026.240.1 vs. uniprot
Match: A0A8J9S4J9_PHATR (Hypothetical protein (Fragment) n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9S4J9_PHATR) HSP 1 Score: 158 bits (399), Expect = 1.340e-46 Identity = 72/98 (73.47%), Postives = 84/98 (85.71%), Query Frame = 1
Query: 10 FLTKQPDCIKFGKMRHYQLEGLNWMIRLNDNGINGILADEMGLGKTLQSISVLAYMHEYKGISGPHIILVPKSTLSNWLNELKRWCPALRPLRFHGTR 303
FLTKQP IKFG ++ YQLE LNWMI L++ G+NGILADEMGLGKTLQSISVLAY E+ I GPH+I VPKSTLSNW+NELKRWCP+LR ++FHG+R
Sbjct: 28 FLTKQPTSIKFGTLKPYQLEALNWMIHLSEKGLNGILADEMGLGKTLQSISVLAYHWEFLRIQGPHLICVPKSTLSNWMNELKRWCPSLRAIKFHGSR 125
BLAST of mRNA_E-fasciculatus_F_contig1026.240.1 vs. uniprot
Match: A0A7S1BNI0_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BNI0_9STRA) HSP 1 Score: 168 bits (425), Expect = 1.540e-46 Identity = 76/99 (76.77%), Postives = 87/99 (87.88%), Query Frame = 1
Query: 7 TFLTKQPDCIKFGKMRHYQLEGLNWMIRLNDNGINGILADEMGLGKTLQSISVLAYMHEYKGISGPHIILVPKSTLSNWLNELKRWCPALRPLRFHGTR 303
TFLTKQP+CI+FG ++ YQLEGLNWMI L + GINGILADEMGLGKTLQSISVLAY EY + GPH+I VPKSTLSNW+NELKRWCP+LR +RFHG+R
Sbjct: 127 TFLTKQPNCIEFGTLKPYQLEGLNWMIHLQEKGINGILADEMGLGKTLQSISVLAYNLEYLNLQGPHLIAVPKSTLSNWMNELKRWCPSLRAIRFHGSR 225
BLAST of mRNA_E-fasciculatus_F_contig1026.240.1 vs. uniprot
Match: K8F373_9CHLO (SNF2 super family n=1 Tax=Bathycoccus prasinos TaxID=41875 RepID=K8F373_9CHLO) HSP 1 Score: 169 bits (427), Expect = 1.840e-46 Identity = 73/106 (68.87%), Postives = 89/106 (83.96%), Query Frame = 1
Query: 7 TFLTKQPDCIKFGKMRHYQLEGLNWMIRLNDNGINGILADEMGLGKTLQSISVLAYMHEYKGISGPHIILVPKSTLSNWLNELKRWCPALRPLRFHGTRASFDQSK 324
T LT QP CIKFG MR YQ+EGLNWMI+L D GINGILADEMGLGKTLQ+IS+L Y+HEY+GI+GPH+++VPKSTL NW+NE KRWCP LR +FHG + + ++ K
Sbjct: 102 TRLTVQPSCIKFGTMRQYQIEGLNWMIKLFDQGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHLVVVPKSTLGNWMNEFKRWCPVLRVFKFHGNQEAREEQK 207 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1026.240.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1026.240.1 >prot_E-fasciculatus_F_contig1026.240.1 ID=prot_E-fasciculatus_F_contig1026.240.1|Name=mRNA_E-fasciculatus_F_contig1026.240.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=108bp ETTFLTKQPDCIKFGKMRHYQLEGLNWMIRLNDNGINGILADEMGLGKTLback to top mRNA from alignment at E-fasciculatus_F_contig1026:19301..19966+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1026.240.1 ID=mRNA_E-fasciculatus_F_contig1026.240.1|Name=mRNA_E-fasciculatus_F_contig1026.240.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=666bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1026:19301..19966+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1026:19301..19966+ >mRNA_E-fasciculatus_F_contig1026.240.1 ID=mRNA_E-fasciculatus_F_contig1026.240.1|Name=mRNA_E-fasciculatus_F_contig1026.240.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=648bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1026:19301..19966+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |