mRNA_E-fasciculatus_F_contig1026.240.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1026.240.1
Unique NamemRNA_E-fasciculatus_F_contig1026.240.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig1026.240.1 vs. uniprot
Match: A0A6H5LCC1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCC1_9PHAE)

HSP 1 Score: 221 bits (563), Expect = 7.680e-70
Identity = 103/104 (99.04%), Postives = 104/104 (100.00%), Query Frame = 1
Query:    1 ETTFLTKQPDCIKFGKMRHYQLEGLNWMIRLNDNGINGILADEMGLGKTLQSISVLAYMHEYKGISGPHIILVPKSTLSNWLNELKRWCPALRPLRFHGTRASF 312
            ETTFLTKQPDCIKFGKMRHYQLEGLNWMIRLNDNGINGILADEMGLGKTLQSISVLAYMHEYKG+SGPHIILVPKSTLSNWLNELKRWCPALRPLRFHGTRASF
Sbjct:  249 ETTFLTKQPDCIKFGKMRHYQLEGLNWMIRLNDNGINGILADEMGLGKTLQSISVLAYMHEYKGVSGPHIILVPKSTLSNWLNELKRWCPALRPLRFHGTRASF 352          
BLAST of mRNA_E-fasciculatus_F_contig1026.240.1 vs. uniprot
Match: D7FV68_ECTSI (Probable chromatin remodelling complex ATPase chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV68_ECTSI)

HSP 1 Score: 216 bits (550), Expect = 5.310e-63
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 1
Query:    1 ETTFLTKQPDCIKFGKMRHYQLEGLNWMIRLNDNGINGILADEMGLGKTLQSISVLAYMHEYKGISGPHIILVPKSTLSNWLNELKRWCPALRPLRFHGTR 303
            ETTFLTKQPDCIKFGKMRHYQLEGLNWMIRLNDNGINGILADEMGLGKTLQSISVLAYMHEYKGISGPHIILVPKSTLSNWLNELKRWCPALRPLRFHGTR
Sbjct:  246 ETTFLTKQPDCIKFGKMRHYQLEGLNWMIRLNDNGINGILADEMGLGKTLQSISVLAYMHEYKGISGPHIILVPKSTLSNWLNELKRWCPALRPLRFHGTR 346          
BLAST of mRNA_E-fasciculatus_F_contig1026.240.1 vs. uniprot
Match: A0A835YGX5_9STRA (Putative chromatin remodelling complex ATPase chain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGX5_9STRA)

HSP 1 Score: 183 bits (465), Expect = 1.500e-51
Identity = 83/99 (83.84%), Postives = 90/99 (90.91%), Query Frame = 1
Query:    7 TFLTKQPDCIKFGKMRHYQLEGLNWMIRLNDNGINGILADEMGLGKTLQSISVLAYMHEYKGISGPHIILVPKSTLSNWLNELKRWCPALRPLRFHGTR 303
            TFLT QP CI FGK+RHYQLEGLNWMIRLN NGINGILADEMGLGKTLQSIS+LAYM+E+KGI GPHI+LVPKSTLSNW+NE  RWCP LR +RFHGTR
Sbjct:  271 TFLTAQPACITFGKLRHYQLEGLNWMIRLNANGINGILADEMGLGKTLQSISILAYMYEHKGIRGPHIVLVPKSTLSNWMNEFARWCPVLRAIRFHGTR 369          
BLAST of mRNA_E-fasciculatus_F_contig1026.240.1 vs. uniprot
Match: A0A7S3UY81_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UY81_HETAK)

HSP 1 Score: 163 bits (412), Expect = 3.490e-50
Identity = 73/96 (76.04%), Postives = 85/96 (88.54%), Query Frame = 1
Query:    7 TFLTKQPDCIKFGKMRHYQLEGLNWMIRLNDNGINGILADEMGLGKTLQSISVLAYMHEYKGISGPHIILVPKSTLSNWLNELKRWCPALRPLRFH 294
            TFL  QP CI+ G MR YQLEGLNWMIRL +NGINGILADEMGLGKTLQSIS+LAYM EYK ++GPH++L+PKSTLSNW+NE KR+CPA+R +RFH
Sbjct:   11 TFLLTQPACIQHGTMRPYQLEGLNWMIRLQENGINGILADEMGLGKTLQSISILAYMREYKNVTGPHLVLLPKSTLSNWMNEFKRFCPAIRVVRFH 106          
BLAST of mRNA_E-fasciculatus_F_contig1026.240.1 vs. uniprot
Match: A0A7S2HGM0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HGM0_9STRA)

HSP 1 Score: 174 bits (440), Expect = 2.230e-49
Identity = 78/101 (77.23%), Postives = 86/101 (85.15%), Query Frame = 1
Query:    1 ETTFLTKQPDCIKFGKMRHYQLEGLNWMIRLNDNGINGILADEMGLGKTLQSISVLAYMHEYKGISGPHIILVPKSTLSNWLNELKRWCPALRPLRFHGTR 303
            E T+L  QP CIKFGKMR YQLEGLNWMIRL +NG+NGILADEMGLGKTLQSIS+L Y  EY  + GPH+ILVPKSTLSNW+NE KRWCP L PLRFHGT+
Sbjct:  190 EPTYLAIQPSCIKFGKMRPYQLEGLNWMIRLQENGVNGILADEMGLGKTLQSISILGYTAEYTDVRGPHLILVPKSTLSNWMNEFKRWCPMLNPLRFHGTK 290          
BLAST of mRNA_E-fasciculatus_F_contig1026.240.1 vs. uniprot
Match: A0A7S3UXF4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UXF4_HETAK)

HSP 1 Score: 161 bits (408), Expect = 7.700e-49
Identity = 72/99 (72.73%), Postives = 83/99 (83.84%), Query Frame = 1
Query:    7 TFLTKQPDCIKFGKMRHYQLEGLNWMIRLNDNGINGILADEMGLGKTLQSISVLAYMHEYKGISGPHIILVPKSTLSNWLNELKRWCPALRPLRFHGTR 303
            TFL  QP CI+ G MR YQLEGLNWMIRL +NGINGILADEMGLGKTLQSIS+L Y  EY+ I GPHI+LVPKSTLSNW+NE +RWCP +R ++FHG +
Sbjct:   11 TFLLTQPACIQHGTMRPYQLEGLNWMIRLQENGINGILADEMGLGKTLQSISILGYTMEYRSIRGPHIVLVPKSTLSNWMNEFQRWCPDIRAIKFHGNK 109          
BLAST of mRNA_E-fasciculatus_F_contig1026.240.1 vs. uniprot
Match: A0A7S2LA35_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LA35_9STRA)

HSP 1 Score: 159 bits (402), Expect = 7.650e-47
Identity = 74/110 (67.27%), Postives = 87/110 (79.09%), Query Frame = 1
Query:    1 ETTFLTKQPDCIKFGKMRHYQLEGLNWMIRLNDNGINGILADEMGLGKTLQSISVLAYMHEYK----GISGPHIILVPKSTLSNWLNELKRWCPALRPLRFHGTRASFDQ 318
            E TFLT QP  + FGKMR YQLEGLNWMIRL ++G+NGILADEMGLGKTLQSIS+L YM EY     G +GPH+I+VPKSTLSNW+NEL RW P L+ +RFHG +   +Q
Sbjct:   73 EATFLTAQPSTLGFGKMRPYQLEGLNWMIRLQEHGVNGILADEMGLGKTLQSISILVYMKEYASEEDGATGPHLIVVPKSTLSNWMNELNRWAPTLKAVRFHGNKEEREQ 182          
BLAST of mRNA_E-fasciculatus_F_contig1026.240.1 vs. uniprot
Match: A0A8J9S4J9_PHATR (Hypothetical protein (Fragment) n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9S4J9_PHATR)

HSP 1 Score: 158 bits (399), Expect = 1.340e-46
Identity = 72/98 (73.47%), Postives = 84/98 (85.71%), Query Frame = 1
Query:   10 FLTKQPDCIKFGKMRHYQLEGLNWMIRLNDNGINGILADEMGLGKTLQSISVLAYMHEYKGISGPHIILVPKSTLSNWLNELKRWCPALRPLRFHGTR 303
            FLTKQP  IKFG ++ YQLE LNWMI L++ G+NGILADEMGLGKTLQSISVLAY  E+  I GPH+I VPKSTLSNW+NELKRWCP+LR ++FHG+R
Sbjct:   28 FLTKQPTSIKFGTLKPYQLEALNWMIHLSEKGLNGILADEMGLGKTLQSISVLAYHWEFLRIQGPHLICVPKSTLSNWMNELKRWCPSLRAIKFHGSR 125          
BLAST of mRNA_E-fasciculatus_F_contig1026.240.1 vs. uniprot
Match: A0A7S1BNI0_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BNI0_9STRA)

HSP 1 Score: 168 bits (425), Expect = 1.540e-46
Identity = 76/99 (76.77%), Postives = 87/99 (87.88%), Query Frame = 1
Query:    7 TFLTKQPDCIKFGKMRHYQLEGLNWMIRLNDNGINGILADEMGLGKTLQSISVLAYMHEYKGISGPHIILVPKSTLSNWLNELKRWCPALRPLRFHGTR 303
            TFLTKQP+CI+FG ++ YQLEGLNWMI L + GINGILADEMGLGKTLQSISVLAY  EY  + GPH+I VPKSTLSNW+NELKRWCP+LR +RFHG+R
Sbjct:  127 TFLTKQPNCIEFGTLKPYQLEGLNWMIHLQEKGINGILADEMGLGKTLQSISVLAYNLEYLNLQGPHLIAVPKSTLSNWMNELKRWCPSLRAIRFHGSR 225          
BLAST of mRNA_E-fasciculatus_F_contig1026.240.1 vs. uniprot
Match: K8F373_9CHLO (SNF2 super family n=1 Tax=Bathycoccus prasinos TaxID=41875 RepID=K8F373_9CHLO)

HSP 1 Score: 169 bits (427), Expect = 1.840e-46
Identity = 73/106 (68.87%), Postives = 89/106 (83.96%), Query Frame = 1
Query:    7 TFLTKQPDCIKFGKMRHYQLEGLNWMIRLNDNGINGILADEMGLGKTLQSISVLAYMHEYKGISGPHIILVPKSTLSNWLNELKRWCPALRPLRFHGTRASFDQSK 324
            T LT QP CIKFG MR YQ+EGLNWMI+L D GINGILADEMGLGKTLQ+IS+L Y+HEY+GI+GPH+++VPKSTL NW+NE KRWCP LR  +FHG + + ++ K
Sbjct:  102 TRLTVQPSCIKFGTMRQYQIEGLNWMIKLFDQGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHLVVVPKSTLGNWMNEFKRWCPVLRVFKFHGNQEAREEQK 207          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1026.240.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LCC1_9PHAE7.680e-7099.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FV68_ECTSI5.310e-63100.00Probable chromatin remodelling complex ATPase chai... [more]
A0A835YGX5_9STRA1.500e-5183.84Putative chromatin remodelling complex ATPase chai... [more]
A0A7S3UY81_HETAK3.490e-5076.04Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2HGM0_9STRA2.230e-4977.23Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S3UXF4_HETAK7.700e-4972.73Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2LA35_9STRA7.650e-4767.27Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A8J9S4J9_PHATR1.340e-4673.47Hypothetical protein (Fragment) n=3 Tax=Phaeodacty... [more]
A0A7S1BNI0_9STRA1.540e-4676.77Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
K8F373_9CHLO1.840e-4668.87SNF2 super family n=1 Tax=Bathycoccus prasinos Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1026contigE-fasciculatus_F_contig1026:19301..19966 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score216.9
Seed ortholog evalue4.8e-54
Seed eggNOG ortholog2880.D7FV68
KEGG koko:K11654
EggNOG free text desc.helicase activity
EggNOG OGsCOG0553@1,KOG0385@2759
COG Functional cat.KL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03021,ko03036
Hectar predicted targeting categoryother localisation
Exons2
Model size324
Cds size324
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927527.9133625-CDS-E-fasciculatus_F_contig1026:19300..194121622927527.9133625-CDS-E-fasciculatus_F_contig1026:19300..19412Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1026 19301..19412 +
1695995579.4572828-CDS-E-fasciculatus_F_contig1026:19300..194121695995579.4572828-CDS-E-fasciculatus_F_contig1026:19300..19412Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1026 19301..19412 +
1622927527.9337158-CDS-E-fasciculatus_F_contig1026:19754..199661622927527.9337158-CDS-E-fasciculatus_F_contig1026:19754..19966Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1026 19755..19966 +
1695995579.4673052-CDS-E-fasciculatus_F_contig1026:19754..199661695995579.4673052-CDS-E-fasciculatus_F_contig1026:19754..19966Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1026 19755..19966 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1026.240.1prot_E-fasciculatus_F_contig1026.240.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1026 19301..19966 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1026.240.1

>prot_E-fasciculatus_F_contig1026.240.1 ID=prot_E-fasciculatus_F_contig1026.240.1|Name=mRNA_E-fasciculatus_F_contig1026.240.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=108bp
ETTFLTKQPDCIKFGKMRHYQLEGLNWMIRLNDNGINGILADEMGLGKTL
QSISVLAYMHEYKGISGPHIILVPKSTLSNWLNELKRWCPALRPLRFHGT
RASFDQSK
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mRNA from alignment at E-fasciculatus_F_contig1026:19301..19966+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1026.240.1 ID=mRNA_E-fasciculatus_F_contig1026.240.1|Name=mRNA_E-fasciculatus_F_contig1026.240.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=666bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1026:19301..19966+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GAGACCACTTTCCTAACGAAGCAGCCGGACTGCATCAAGTTCGGGAAGAT GAGGCACTACCAGCTGGAAGGCCTAAACTGGATGATTCGCCTCAACGACA ACGGCATCAATGGTAAGTAAAGTAGCGTTGATCCACAGAAGGGTTGAGCT CGACGGTACTCATGTCACGCCGGTGTCGCAGAGAAGCTGCAGAGTTGCTG TTTTTTTATCGAATCTGACTACTGCTTTGCTGGTCTGGCGCGTGTTGGCG TGTGGTGGCATGGGCTACGCTACCCGGCCAAAACCAACTCCAAAGACGAA GAGCAAGTACAAGTATGTAAGCGTGCGTGAGAAGAAACCGTCTGTGATCC GCAGCCGCTTTGAGGGAGTCCGTGAGTGCGTCGTATGTGTAGAGCGTGTT TCTGGCGACGGTCTTGACGTGATGTGCTTTCCCTCCCTCCGCGATTCGAG CCAGGTATCCTCGCGGACGAGATGGGTCTGGGCAAGACCCTACAGAGCAT CAGCGTTCTGGCCTACATGCACGAGTACAAGGGCATCAGCGGCCCGCACA TCATTCTCGTGCCCAAGAGCACCCTGTCCAACTGGCTCAACGAGCTCAAG CGCTGGTGCCCCGCGCTCCGCCCCCTCCGGTTCCACGGCACGAGGGCGAG TTTTGACCAATCAAAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1026:19301..19966+

>mRNA_E-fasciculatus_F_contig1026.240.1 ID=mRNA_E-fasciculatus_F_contig1026.240.1|Name=mRNA_E-fasciculatus_F_contig1026.240.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=648bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1026:19301..19966+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GAGACCACTTTCCTAACGAAGCAGCCGGACTGCATCAAGTTCGGGAAGAT
GAGGCACTACCAGCTGGAAGGCCTAAACTGGATGATTCGCCTCAACGACA
ACGGCATCAATGGAGACCACTTTCCTAACGAAGCAGCCGGACTGCATCAA
GTTCGGGAAGATGAGGCACTACCAGCTGGAAGGCCTAAACTGGATGATTC
GCCTCAACGACAACGGCATCAATGGTATCCTCGCGGACGAGATGGGTCTG
GGCAAGACCCTACAGAGCATCAGCGTTCTGGCCTACATGCACGAGTACAA
GGGCATCAGCGGCCCGCACATCATTCTCGTGCCCAAGAGCACCCTGTCCA
ACTGGCTCAACGAGCTCAAGCGCTGGTGCCCCGCGCTCCGCCCCCTCCGG
TTCCACGGCACGAGGGCGAGTTTTGACCAATCAAAGGTATCCTCGCGGAC
GAGATGGGTCTGGGCAAGACCCTACAGAGCATCAGCGTTCTGGCCTACAT
GCACGAGTACAAGGGCATCAGCGGCCCGCACATCATTCTCGTGCCCAAGA
GCACCCTGTCCAACTGGCTCAACGAGCTCAAGCGCTGGTGCCCCGCGCTC
CGCCCCCTCCGGTTCCACGGCACGAGGGCGAGTTTTGACCAATCAAAG
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