mRNA_E-fasciculatus_F_contig10257.236.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig10257.236.1
Unique NamemRNA_E-fasciculatus_F_contig10257.236.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig10257.236.1 vs. uniprot
Match: D7FZX5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZX5_ECTSI)

HSP 1 Score: 231 bits (589), Expect = 3.600e-74
Identity = 114/118 (96.61%), Postives = 115/118 (97.46%), Query Frame = 1 
Query:    1 MEAPRTPIRGNGVVQTKSKAGGPRTPSANRLAVAERGVGARVERGETAPVDPHFQQSARAWRSGGDRKIMFDNRGGHALTPEAQRPVALVAILHVCAWLLIAAGMFQIVMSKCADFRY 354
            MEAP TP RGNGVVQTKSKAGGPRTPSANRLAVAERGVGARVERGETAPVDPHFQQSARAWRSGGDRKIMFDNRGGHALTPEAQRP ALVAI+HVCAWLLIAAGMFQIVMSKCADFRY
Sbjct:    1 MEAPSTPTRGNGVVQTKSKAGGPRTPSANRLAVAERGVGARVERGETAPVDPHFQQSARAWRSGGDRKIMFDNRGGHALTPEAQRPPALVAIMHVCAWLLIAAGMFQIVMSKCADFRY 118
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10257.236.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FZX5_ECTSI3.600e-7496.61Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10257contigE-fasciculatus_F_contig10257:228..3273 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-22_003720.1
Exons2
Model size363
Cds size363
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927527.5834208-CDS-E-fasciculatus_F_contig10257:227..3671622927527.5834208-CDS-E-fasciculatus_F_contig10257:227..367Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10257 228..367 -
1695995579.3115246-CDS-E-fasciculatus_F_contig10257:227..3671695995579.3115246-CDS-E-fasciculatus_F_contig10257:227..367Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10257 228..367 -
1622927527.5963256-CDS-E-fasciculatus_F_contig10257:3050..32731622927527.5963256-CDS-E-fasciculatus_F_contig10257:3050..3273Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10257 3051..3273 -
1695995579.3202379-CDS-E-fasciculatus_F_contig10257:3050..32731695995579.3202379-CDS-E-fasciculatus_F_contig10257:3050..3273Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10257 3051..3273 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10257.236.1prot_E-fasciculatus_F_contig10257.236.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig10257 228..3273 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig10257.236.1

>prot_E-fasciculatus_F_contig10257.236.1 ID=prot_E-fasciculatus_F_contig10257.236.1|Name=mRNA_E-fasciculatus_F_contig10257.236.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=121bp
MEAPRTPIRGNGVVQTKSKAGGPRTPSANRLAVAERGVGARVERGETAPV
DPHFQQSARAWRSGGDRKIMFDNRGGHALTPEAQRPVALVAILHVCAWLL
IAAGMFQIVMSKCADFRYVS*
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mRNA from alignment at E-fasciculatus_F_contig10257:228..3273-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig10257.236.1 ID=mRNA_E-fasciculatus_F_contig10257.236.1|Name=mRNA_E-fasciculatus_F_contig10257.236.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3046bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10257:228..3273- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGAGGCACCGCGTACTCCCATCCGGGGGAATGGCGTGGTACAGACGAA
GTCGAAGGCGGGAGGGCCCAGAACTCCGAGCGCAAACCGTCTCGCGGTCG
CCGAGAGAGGAGTCGGCGCCAGGGTAGAGCGGGGGGAGACGGCTCCGGTT
GACCCTCACTTCCAGCAGAGCGCTAGGGCGTGGCGGTCAGGCGGTGACCG
GAAGATCATGTTCGACAACAGAGGTGTGTGGTTGGTTTGGCGGACGAGGG
AGGAAGCGGCTGCCTGGTGTTGTCTTCTTGCGAGCTGTGTGTTGGACAAT
CGTGCAGCAGCCTTTTATTTTCCGAAAGAAAGACACTCCGTCCATCGCCG
GGTGTGATGGCCATCATGCTGCAACTACCAACTACAGCAGTTGTGCGTTG
AGTGTCACCCCCTCTCGTGAAAAACGTGGCTCCCTGTGGTATGGGTGTGT
GTGTGTAGATGATGATGGCAGATGTAGTTGTTCCGTTAGAGGTTGTACCC
AGCAATGCAGAGCAGAGCTCGGGGAATAATGTGTCCGAAAAATGCATGTA
CGCCCGGATGATTCAAAGATGCGTGGTACGCTCACGCTCGGTGTGTCTGC
TTTCGTGGTGTGCAGCGGGTGAGGAGCAACTACGCATACAACTGGCTGCC
GCACATAGAGAGGCACGTGTTGTCTTCCGTGTATCTAATCCCGAGTTGCG
GGGAGGAACGGGGCCAGATCAAAATCGTATTCAGCCTGCGTATTCCATTC
TGGCTTCTGGCAGATTCGCCGTGTGTACCCAAAAACTATCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCGCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCGCTCTCTCTCGCTCTCTCTCTCTCTCTCTCTCCTCTCTCTCT
CCGGAGTTGTACAAAAGTTTATCTGTACACCGGTGGCAAGGTACCATGCG
TATATAGACTATACGCTACTCGCTGCTACAGCACCGTTACACCGCCGCAG
GCCACGTGCCTACGCGGCTCAAGGAAGCAAGAGACGTGATTACCCATATG
CCTGTTATAACGCCTGTGTACCCTGCGGGTTGTTTCCCTCCTCGAGTATT
TATACCTTCGAGTCTCTCCGATTGCCAGACCTGACCGCTATTAATAGCTG
TTGTTTTCATACTTTTAGAAGAGATCCGGACCTACGGAATATTGAACAGC
CCCATCAAGCACAGCCGTCATCCCGGTGTAGCGGTTTCCTGTGTGGCGGG
ATGGATGCCCTGATAGCGGTTCCAAAATATAGTGGCACGGCTGCACCTCC
GTCAGTCAATCAGGTTTGGCGGCGTGCCCTCAAGAAGGAGTTCGGTTATC
TCGTGACAACCAGCAGAAGGACCGCTAATCTGGGACCACGACTTGTATTG
TTTTGTATGTATTGTATTGTGTCTTTTAATATTTTTGTTCCGTTCCGTTC
TCGTCGGCATACCGTCCGTAGTGCGTCCGTGTCGTGCTCCCCAATCTTTG
TGTTATAGCTCCCCGACTCTATCTACACTACCACTTGTCTACGCGCAGCC
TTCCGTCCGGGTCGCTGGTCGCAATTAGGCAACGCAACAGAAGCACTCCT
TCTACATTGCCGATAATCTGAACAATCGACCCTGTAGCCAGATGCAGATA
CATAGCGCCTTCAATAGTTGACCCATCTCAATTGGCGACAGAATCTCGTT
GGCGGGAAATCTTGTGTTTTTCGATCTTTTGGGCAAATTACCTCGCGCAC
GACTCCGAATCGCCTTCTTCTTCTTCTCCCAGAACAAGTGCAGCAGCCAT
CAACGTCTTCAGCAGACCACCGGTTTGTCTTGACTGTTTTGACGTGGTCG
ACAGTTTTATGTTTTTCGAGAAAAGAAGAGAGTTGCTCCGAATCGCCAAA
ACAGGCACAAATTGAGTTGTTCGCCAAATCCATGCCAAACGTTCGCACTA
CTGCTGTTGGCTCAAAATGAGAAAATCTTGTTCTACCCTCCTTGCGAATA
GAAAAACTCTGAGCACGTCACAACAGGTCGATGGTGTGCTACAATAATAT
GCCAAGACCTCAATGAGAGCTTCAGTTGTTCCTAAAACGAACGGTGGAAT
AGGTCGGAGTCGTTCGCGAGGTAAACCGCCCTAAACAGGGCGAAAATCAC
CAGATTTCTCGCCAACAAGATTATTCCCAGAACCCAGAACGATGAATGAG
TTTTGCGAACCTCTAGATTTGGCTGATGCTGGGGTTCTTCGTTACAATAC
CTCCTGTGGGCCACAGCAGATGGCCGCTCTTTGTATAGGTTTTAGTGTTG
GCGTTCGTACCCGCCGGGCTCACAAACGGTGCTCAAGTTCTTTTTTTTTT
TTTTTCAAGTTCTTAAATGTTTGATCAAATGTTGAGCATGAGGTTGTTAA
CTGCCAAGCCCTTCAGCGTGGGCAACATCTGTACAATAGTTGTACCCAAA
CCGCCAACAATGTGTACAGTAAATAGAAGGGATACGAAGAAGAGTTACAG
CAGTACATGTGTGGAAAAAATCTTGTTTACCGTCTGAGGCTCCATGCCTG
TACAAACAATATGTAGACTGGATTTACACCCAGACGCAGAAGGTGAAACT
GACAGTCAGTCCGGTCGAGATAATCAAACACAGGCCTCCGGACTTGAGTG
CATGTCACGACTGCACACGAAAGATTGGACAAAAAGAAGTACTTGGCGTA
TATTTTTTCTACATACAGACAGACAAAATTTCGGACCCCGGATTGAAGGC
AGCCCTGCAAGAGCAGGGCAGTTTATTTTATCTACAGACAGACAGACGGA
CAGACAATTGTGGCTAGCTAAGTTTTCTCTAGCTCTTGGTTTGAATCAAT
CGCCGATTATCCCGTCTCCTCTCCTCTGCCGCTGGAATAACGATCCTGTG
AAACAGGCGGCCACGCCCTGACTCCCGAGGCGCAGCGCCCTGTAGCGCTA
GTGGCGATCCTTCACGTTTGTGCGTGGTTGCTGATAGCGGCGGGGATGTT
CCAGATCGTCATGTCCAAGTGTGCCGACTTCAGATATGTGAGTTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10257:228..3273-

>mRNA_E-fasciculatus_F_contig10257.236.1 ID=mRNA_E-fasciculatus_F_contig10257.236.1|Name=mRNA_E-fasciculatus_F_contig10257.236.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=726bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10257:228..3273- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGAGGCACCGCGTACTCCCATCCGGGGGAATGGCGTGGTACAGACGAA
GTCGAAGGCGGGAGGGCCCAGAACTCCGAGCGCAAACCGTCTCGCGGTCG
CCGAGAGAGGAGTCGGCGCCAGGGTAGAGCGGGGGGAGACGGCTCCGGTT
GACCCTCACTTCCAGCAGAGCGCTAGGGCGTGGCGGTCAGGCGGTGACCG
GAAGATCATGTTCGACAACAGAGATGGAGGCACCGCGTACTCCCATCCGG
GGGAATGGCGTGGTACAGACGAAGTCGAAGGCGGGAGGGCCCAGAACTCC
GAGCGCAAACCGTCTCGCGGTCGCCGAGAGAGGAGTCGGCGCCAGGGTAG
AGCGGGGGGAGACGGCTCCGGTTGACCCTCACTTCCAGCAGAGCGCTAGG
GCGTGGCGGTCAGGCGGTGACCGGAAGATCATGTTCGACAACAGAGGCGG
CCACGCCCTGACTCCCGAGGCGCAGCGCCCTGTAGCGCTAGTGGCGATCC
TTCACGTTTGTGCGTGGTTGCTGATAGCGGCGGGGATGTTCCAGATCGTC
ATGTCCAAGTGTGCCGACTTCAGATATGTGAGTTGAGCGGCCACGCCCTG
ACTCCCGAGGCGCAGCGCCCTGTAGCGCTAGTGGCGATCCTTCACGTTTG
TGCGTGGTTGCTGATAGCGGCGGGGATGTTCCAGATCGTCATGTCCAAGT
GTGCCGACTTCAGATATGTGAGTTGA
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