mRNA_E-fasciculatus_F_contig10253.233.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig10253.233.1
Unique NamemRNA_E-fasciculatus_F_contig10253.233.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig10253.233.1 vs. uniprot
Match: D7G8F1_ECTSI (Putative NIN-like transcription factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8F1_ECTSI)

HSP 1 Score: 199 bits (506), Expect = 1.150e-58
Identity = 105/127 (82.68%), Postives = 110/127 (86.61%), Query Frame = 2
Query:  170 MKAENTLHVHVPPSRCQGEKLGRREIFRDIARRVPKDKLRLFMTMTQVAAAKAIGISPTTLKKLCRYYGIPRWPYRQIAGKTRAVDRLEELLDEPSSELPKAVLKDHLSLLRCRVVGEGGAPVKSNA 550
            MK ++TL     P R Q EKLGRREIFRDIARRVPKDKLRLFMTMTQVAAAKAIGISPTTLKKLCRYYGI RWPYRQIAGKTRAVDRL ELLDEPSSELPKAVLKDHLSLLR RV+G+GG  +   A
Sbjct:    1 MKTDDTL----TPPRYQSEKLGRREIFRDIARRVPKDKLRLFMTMTQVAAAKAIGISPTTLKKLCRYYGISRWPYRQIAGKTRAVDRLGELLDEPSSELPKAVLKDHLSLLRRRVLGDGGPTMARRA 123          
BLAST of mRNA_E-fasciculatus_F_contig10253.233.1 vs. uniprot
Match: A0A6H5K716_9PHAE (RWP-RK domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K716_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 7.170e-11
Identity = 43/109 (39.45%), Postives = 60/109 (55.05%), Query Frame = 2
Query:  197 HVPPS--RCQGEKLGRREIFRDIARRVPKDKLRLFMTMTQVAAAKAIGISPTTLKKLCRYYGIPRWPYRQIAGKTRAVDRLEELLDEPSSELPKAVLKDHLSLLRCRVV 517
            H PP   R    K  +RE   DIA+R+P + +R +      AAA+A+ IS TTLK+LCR +G+ RWP+RQI G  R ++ LE   D    +   +V +    L R R V
Sbjct:   92 HEPPKVPRRTPSKGNKRETLADIAKRIPVELMRHYFNYPLRAAAEAMDISVTTLKRLCRRHGVKRWPHRQICGINRTLNDLETQHDTAKGDEVDSVAEQLRQLHRRRDV 200          
BLAST of mRNA_E-fasciculatus_F_contig10253.233.1 vs. uniprot
Match: D8LEC2_ECTSI (Putative NIN-like transcription factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEC2_ECTSI)

HSP 1 Score: 69.3 bits (168), Expect = 1.800e-10
Identity = 43/109 (39.45%), Postives = 58/109 (53.21%), Query Frame = 2
Query:  197 HVPPS--RCQGEKLGRREIFRDIARRVPKDKLRLFMTMTQVAAAKAIGISPTTLKKLCRYYGIPRWPYRQIAGKTRAVDRLEELLDEPSSELPKAVLKDHLSLLRCRVV 517
            H PP   R    K  +RE   DIA+R+P   +R +      AAA+A+ IS TTLK+LCR +G+ RWP+RQI G  R ++ LE   D    +   +V      L R R V
Sbjct:   80 HEPPKVPRRTPSKGNKRETLADIAKRIPVGLMRHYFNYPLRAAAEAMDISVTTLKRLCRRHGVKRWPHRQICGINRTLNDLETQHDTAKGDEVDSVADQLRQLYRRRDV 188          
BLAST of mRNA_E-fasciculatus_F_contig10253.233.1 vs. uniprot
Match: D8LRL6_ECTSI (Putative NIN-like transcription factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRL6_ECTSI)

HSP 1 Score: 68.2 bits (165), Expect = 4.050e-10
Identity = 31/72 (43.06%), Postives = 44/72 (61.11%), Query Frame = 2
Query:  287 RLFMTMTQVAAAKAIGISPTTLKKLCRYYGIPRWPYRQIAGKTRAVDRLEELLDEPSSELPKAVLKDHLSLL 502
            R F+ +    AA+A+GIS   LK+ CR YGIPRWPYRQ+      +  L+  L++  S++ +A LKD L  L
Sbjct:   50 RFFIVVAAATAARALGISLNKLKRACRQYGIPRWPYRQVRSIRSTIHSLKNALEKCDSDIERASLKDRLESL 121          
BLAST of mRNA_E-fasciculatus_F_contig10253.233.1 vs. uniprot
Match: A0A835Z7T4_9STRA (RWP-RK domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7T4_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 1.650e-9
Identity = 32/92 (34.78%), Postives = 53/92 (57.61%), Query Frame = 2
Query:  236 RREIFRDIARRVPKDKLRLFMTMTQVAAAKAIGISPTTLKKLCRYYGIPRWPYRQIAGKTRAVDRLEELLDEPSSELPKAVLKDHLSLLRCR 511
            +R+   ++A+R+P   L  F  +    AA+ + +S T LKKLCR YGI RWP+RQ++   +++ +LEE +   S +   A L+     LR +
Sbjct:    2 KRQTSEEVAKRLPVSVLEEFYHVPLNIAARELSVSLTMLKKLCRQYGIKRWPHRQVSSLNKSLGKLEEKILGASDDKAAAALRAKAGPLRTK 93          
BLAST of mRNA_E-fasciculatus_F_contig10253.233.1 vs. uniprot
Match: A0A6H5J9E8_9PHAE (RWP-RK domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9E8_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 5.670e-9
Identity = 29/62 (46.77%), Postives = 40/62 (64.52%), Query Frame = 2
Query:  317 AAKAIGISPTTLKKLCRYYGIPRWPYRQIAGKTRAVDRLEELLDEPSSELPKAVLKDHLSLL 502
            AA+A+G+S   LK+ CR YGIPRWPYRQ+      +  L+  L++  SE+ +A LKD L  L
Sbjct:   27 AARALGVSLNKLKRACRQYGIPRWPYRQVRSIRSTIQSLKNALEKCDSEIERASLKDRLESL 88          
BLAST of mRNA_E-fasciculatus_F_contig10253.233.1 vs. uniprot
Match: UPI001ADD4CFD (protein NLP3-like n=1 Tax=Oryza brachyantha TaxID=4533 RepID=UPI001ADD4CFD)

HSP 1 Score: 61.6 bits (148), Expect = 7.740e-8
Identity = 25/76 (32.89%), Postives = 53/76 (69.74%), Query Frame = 2
Query:  278 DKLRLFMTMTQVAAAKAIGISPTTLKKLCRYYGIPRWPYRQIAGKTRAVDRLEELLDEPS-SELPKAVLKDHLSLL 502
            ++L+ + + +   AA+++G+ PTT+K++CR +GIPRWP+R+I+   R++D+++ +++  + S  P   +  H +LL
Sbjct:  261 EELQKYFSGSLKDAARSLGVCPTTMKRICRQHGIPRWPFRKISKVNRSLDKMKRVMESVNCSPSPPVAMPAHPALL 336          
BLAST of mRNA_E-fasciculatus_F_contig10253.233.1 vs. uniprot
Match: J3L9F5_ORYBR (Uncharacterized protein n=1 Tax=Oryza brachyantha TaxID=4533 RepID=J3L9F5_ORYBR)

HSP 1 Score: 61.6 bits (148), Expect = 7.920e-8
Identity = 25/76 (32.89%), Postives = 53/76 (69.74%), Query Frame = 2
Query:  278 DKLRLFMTMTQVAAAKAIGISPTTLKKLCRYYGIPRWPYRQIAGKTRAVDRLEELLDEPS-SELPKAVLKDHLSLL 502
            ++L+ + + +   AA+++G+ PTT+K++CR +GIPRWP+R+I+   R++D+++ +++  + S  P   +  H +LL
Sbjct:  302 EELQKYFSGSLKDAARSLGVCPTTMKRICRQHGIPRWPFRKISKVNRSLDKMKRVMESVNCSPSPPVAMPAHPALL 377          
BLAST of mRNA_E-fasciculatus_F_contig10253.233.1 vs. uniprot
Match: A0A0D9VBZ3_9ORYZ (Uncharacterized protein n=1 Tax=Leersia perrieri TaxID=77586 RepID=A0A0D9VBZ3_9ORYZ)

HSP 1 Score: 61.6 bits (148), Expect = 8.300e-8
Identity = 26/79 (32.91%), Postives = 54/79 (68.35%), Query Frame = 2
Query:  269 VPKDKLRLFMTMTQVAAAKAIGISPTTLKKLCRYYGIPRWPYRQIAGKTRAVDRLEELLDEPS-SELPKAVLKDHLSLL 502
            V  ++L+ + + +   AA+++G+ PTT+K++CR +GIPRWP+R+I+   R++D+++ +++  + S  P   +  H +LL
Sbjct:  420 VTLEELQKYFSGSLKDAARSLGVCPTTMKRICRQHGIPRWPFRKISKVNRSLDKMKRVMESVNCSPSPPVAVPAHPALL 498          
BLAST of mRNA_E-fasciculatus_F_contig10253.233.1 vs. uniprot
Match: A0A0E0JV98_ORYPU (Uncharacterized protein n=1 Tax=Oryza punctata TaxID=4537 RepID=A0A0E0JV98_ORYPU)

HSP 1 Score: 61.2 bits (147), Expect = 1.120e-7
Identity = 24/63 (38.10%), Postives = 46/63 (73.02%), Query Frame = 2
Query:  317 AAKAIGISPTTLKKLCRYYGIPRWPYRQIAGKTRAVDRLEELLDEPS-SELPKAVLKDHLSLL 502
            AA+++G+ PTT+K++CR +GIPRWP+R+I+   R++D+++ +++  + S  P   +  H +LL
Sbjct:  415 AARSLGVCPTTMKRICRQHGIPRWPFRKISKVNRSLDKMKRVMESVNCSASPPVAMPAHPALL 477          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10253.233.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8F1_ECTSI1.150e-5882.68Putative NIN-like transcription factor n=1 Tax=Ect... [more]
A0A6H5K716_9PHAE7.170e-1139.45RWP-RK domain-containing protein n=1 Tax=Ectocarpu... [more]
D8LEC2_ECTSI1.800e-1039.45Putative NIN-like transcription factor n=1 Tax=Ect... [more]
D8LRL6_ECTSI4.050e-1043.06Putative NIN-like transcription factor n=1 Tax=Ect... [more]
A0A835Z7T4_9STRA1.650e-934.78RWP-RK domain-containing protein (Fragment) n=1 Ta... [more]
A0A6H5J9E8_9PHAE5.670e-946.77RWP-RK domain-containing protein n=1 Tax=Ectocarpu... [more]
UPI001ADD4CFD7.740e-832.89protein NLP3-like n=1 Tax=Oryza brachyantha TaxID=... [more]
J3L9F5_ORYBR7.920e-832.89Uncharacterized protein n=1 Tax=Oryza brachyantha ... [more]
A0A0D9VBZ3_9ORYZ8.300e-832.91Uncharacterized protein n=1 Tax=Leersia perrieri T... [more]
A0A0E0JV98_ORYPU1.120e-738.10Uncharacterized protein n=1 Tax=Oryza punctata Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10253contigE-fasciculatus_F_contig10253:494..1505 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score62.4
Seed ortholog evalue1.8e-07
Seed eggNOG ortholog40149.OMERI02G03580.2
EggNOG free text desc.RWP-RK domain
EggNOG OGs2CMF0@1,2QQ6H@2759,37M05@33090,3GXRC@35493,3IFFY@38820,3KT8Q@4447
COG Functional cat.K
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size559
Cds size390
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10253.233.1prot_E-fasciculatus_F_contig10253.233.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig10253 494..1336 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927527.336748-CDS-E-fasciculatus_F_contig10253:493..7271622927527.336748-CDS-E-fasciculatus_F_contig10253:493..727Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10253 494..727 -
1695995579.2203803-CDS-E-fasciculatus_F_contig10253:493..7271695995579.2203803-CDS-E-fasciculatus_F_contig10253:493..727Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10253 494..727 -
1622927527.3619995-CDS-E-fasciculatus_F_contig10253:1180..13361622927527.3619995-CDS-E-fasciculatus_F_contig10253:1180..1336Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10253 1181..1336 -
1695995579.2304409-CDS-E-fasciculatus_F_contig10253:1180..13361695995579.2304409-CDS-E-fasciculatus_F_contig10253:1180..1336Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10253 1181..1336 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927527.380723-UTR-E-fasciculatus_F_contig10253:1336..15051622927527.380723-UTR-E-fasciculatus_F_contig10253:1336..1505Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10253 1337..1505 -
1695995579.2383845-UTR-E-fasciculatus_F_contig10253:1336..15051695995579.2383845-UTR-E-fasciculatus_F_contig10253:1336..1505Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10253 1337..1505 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig10253.233.1

>prot_E-fasciculatus_F_contig10253.233.1 ID=prot_E-fasciculatus_F_contig10253.233.1|Name=mRNA_E-fasciculatus_F_contig10253.233.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=130bp
MKAENTLHVHVPPSRCQGEKLGRREIFRDIARRVPKDKLRLFMTMTQVAA
AKAIGISPTTLKKLCRYYGIPRWPYRQIAGKTRAVDRLEELLDEPSSELP
KAVLKDHLSLLRCRVVGEGGAPVKSNAIL*
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mRNA from alignment at E-fasciculatus_F_contig10253:494..1505-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig10253.233.1 ID=mRNA_E-fasciculatus_F_contig10253.233.1|Name=mRNA_E-fasciculatus_F_contig10253.233.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1012bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10253:494..1505- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGACCACCAACTACACCTACCTGGAAATGCGAGCGAATTCCGGGGCGGGG GCAGTTTCTGAGACGATACAACGATGTCTGCCTGCTGGCCAGACACGTCG TCGCACGACAACTGATAATCCCAGAGGCTGTCTCCTGCTGCTGTAGTAGC GCCCAGCAACATCCCCTCGATGAAGGCCGAGAACACACTACATGTGCATG TACCCCCTTCTCGCTGCCAGGGCGAGAAGCTGGGACGCCGAGAAATTTTC AGAGACATAGCTCGCAGAGTGCCGAAGGACAAGCTCCGCCTCTTCATGAC GATGACTCAAGTTGCGGCAGCAAAGGTGAAAGGGAGCTACAGCAGCAGTG TTTAGAGTGTACAGTTGTTCGCGAGGTATGATAGAGCTACTATTGTACAT GGTCGTATCTATATGTACAACCTATGATACTTTAGATAGACGCGAATCCA ACGACCGGTCGTTATGGTAGTTGGTGGCTGAAGAAACTTTCTTCAATTAT AGAGTGCGCATGCACCGAGAATGACTAAACAGCAGTACTACATACATACG AGACTTCTTTGTCTATTTATGGCATTCGCATAGACAACTTGTTTTTTTCT GGTGTTGTTTGGTGGTGTCAAAGGCTTGCGCCTCTTGTGAATAGGGAACC CCCGCTTTGATCCCGTTCTCAGACCATCTTGACTTGGTGATGTTCACAAA AGGCGTATCGACTGACGTCGCACCATCAAAATGTCGATCAACGTATCCTT TTTCATTCACCGTTTTTTTTCGTTTCAGGCCATCGGCATCTCACCGACCA CGCTGAAGAAGCTGTGCCGGTACTACGGGATACCGCGGTGGCCCTACCGC CAGATCGCGGGCAAAACACGAGCCGTGGATCGTCTCGAGGAGTTGCTCGA CGAGCCGTCGTCGGAGTTGCCCAAGGCCGTCCTCAAAGACCACCTCTCGC TGCTTCGCTGTCGGGTCGTCGGCGAGGGGGGAGCACCGGTAAAATCAAAC GCTATTTTGTAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10253:494..1505-

>mRNA_E-fasciculatus_F_contig10253.233.1 ID=mRNA_E-fasciculatus_F_contig10253.233.1|Name=mRNA_E-fasciculatus_F_contig10253.233.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=780bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10253:494..1505- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAAGGCCGAGAACACACTACATGTGCATGTACCCCCTTCTCGCTGCCA
GGGCGAGAAGCTGGGACGCCGAGAAATTTTCAGAGACATAGCTCGCAGAG
TGCCGAAGGACAAGCTCCGCCTCTTCATGACGATGACTCAAGTTGCGGCA
GCAAAGATGAAGGCCGAGAACACACTACATGTGCATGTACCCCCTTCTCG
CTGCCAGGGCGAGAAGCTGGGACGCCGAGAAATTTTCAGAGACATAGCTC
GCAGAGTGCCGAAGGACAAGCTCCGCCTCTTCATGACGATGACTCAAGTT
GCGGCAGCAAAGGCCATCGGCATCTCACCGACCACGCTGAAGAAGCTGTG
CCGGTACTACGGGATACCGCGGTGGCCCTACCGCCAGATCGCGGGCAAAA
CACGAGCCGTGGATCGTCTCGAGGAGTTGCTCGACGAGCCGTCGTCGGAG
TTGCCCAAGGCCGTCCTCAAAGACCACCTCTCGCTGCTTCGCTGTCGGGT
CGTCGGCGAGGGGGGAGCACCGGTAAAATCAAACGCTATTTTGTAGGCCA
TCGGCATCTCACCGACCACGCTGAAGAAGCTGTGCCGGTACTACGGGATA
CCGCGGTGGCCCTACCGCCAGATCGCGGGCAAAACACGAGCCGTGGATCG
TCTCGAGGAGTTGCTCGACGAGCCGTCGTCGGAGTTGCCCAAGGCCGTCC
TCAAAGACCACCTCTCGCTGCTTCGCTGTCGGGTCGTCGGCGAGGGGGGA
GCACCGGTAAAATCAAACGCTATTTTGTAG
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