mRNA_E-fasciculatus_F_contig10253.233.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig10253.233.1 vs. uniprot
Match: D7G8F1_ECTSI (Putative NIN-like transcription factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8F1_ECTSI) HSP 1 Score: 199 bits (506), Expect = 1.150e-58 Identity = 105/127 (82.68%), Postives = 110/127 (86.61%), Query Frame = 2
Query: 170 MKAENTLHVHVPPSRCQGEKLGRREIFRDIARRVPKDKLRLFMTMTQVAAAKAIGISPTTLKKLCRYYGIPRWPYRQIAGKTRAVDRLEELLDEPSSELPKAVLKDHLSLLRCRVVGEGGAPVKSNA 550
MK ++TL P R Q EKLGRREIFRDIARRVPKDKLRLFMTMTQVAAAKAIGISPTTLKKLCRYYGI RWPYRQIAGKTRAVDRL ELLDEPSSELPKAVLKDHLSLLR RV+G+GG + A
Sbjct: 1 MKTDDTL----TPPRYQSEKLGRREIFRDIARRVPKDKLRLFMTMTQVAAAKAIGISPTTLKKLCRYYGISRWPYRQIAGKTRAVDRLGELLDEPSSELPKAVLKDHLSLLRRRVLGDGGPTMARRA 123
BLAST of mRNA_E-fasciculatus_F_contig10253.233.1 vs. uniprot
Match: A0A6H5K716_9PHAE (RWP-RK domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K716_9PHAE) HSP 1 Score: 70.5 bits (171), Expect = 7.170e-11 Identity = 43/109 (39.45%), Postives = 60/109 (55.05%), Query Frame = 2
Query: 197 HVPPS--RCQGEKLGRREIFRDIARRVPKDKLRLFMTMTQVAAAKAIGISPTTLKKLCRYYGIPRWPYRQIAGKTRAVDRLEELLDEPSSELPKAVLKDHLSLLRCRVV 517
H PP R K +RE DIA+R+P + +R + AAA+A+ IS TTLK+LCR +G+ RWP+RQI G R ++ LE D + +V + L R R V
Sbjct: 92 HEPPKVPRRTPSKGNKRETLADIAKRIPVELMRHYFNYPLRAAAEAMDISVTTLKRLCRRHGVKRWPHRQICGINRTLNDLETQHDTAKGDEVDSVAEQLRQLHRRRDV 200
BLAST of mRNA_E-fasciculatus_F_contig10253.233.1 vs. uniprot
Match: D8LEC2_ECTSI (Putative NIN-like transcription factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEC2_ECTSI) HSP 1 Score: 69.3 bits (168), Expect = 1.800e-10 Identity = 43/109 (39.45%), Postives = 58/109 (53.21%), Query Frame = 2
Query: 197 HVPPS--RCQGEKLGRREIFRDIARRVPKDKLRLFMTMTQVAAAKAIGISPTTLKKLCRYYGIPRWPYRQIAGKTRAVDRLEELLDEPSSELPKAVLKDHLSLLRCRVV 517
H PP R K +RE DIA+R+P +R + AAA+A+ IS TTLK+LCR +G+ RWP+RQI G R ++ LE D + +V L R R V
Sbjct: 80 HEPPKVPRRTPSKGNKRETLADIAKRIPVGLMRHYFNYPLRAAAEAMDISVTTLKRLCRRHGVKRWPHRQICGINRTLNDLETQHDTAKGDEVDSVADQLRQLYRRRDV 188
BLAST of mRNA_E-fasciculatus_F_contig10253.233.1 vs. uniprot
Match: D8LRL6_ECTSI (Putative NIN-like transcription factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRL6_ECTSI) HSP 1 Score: 68.2 bits (165), Expect = 4.050e-10 Identity = 31/72 (43.06%), Postives = 44/72 (61.11%), Query Frame = 2
Query: 287 RLFMTMTQVAAAKAIGISPTTLKKLCRYYGIPRWPYRQIAGKTRAVDRLEELLDEPSSELPKAVLKDHLSLL 502
R F+ + AA+A+GIS LK+ CR YGIPRWPYRQ+ + L+ L++ S++ +A LKD L L
Sbjct: 50 RFFIVVAAATAARALGISLNKLKRACRQYGIPRWPYRQVRSIRSTIHSLKNALEKCDSDIERASLKDRLESL 121
BLAST of mRNA_E-fasciculatus_F_contig10253.233.1 vs. uniprot
Match: A0A835Z7T4_9STRA (RWP-RK domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7T4_9STRA) HSP 1 Score: 62.8 bits (151), Expect = 1.650e-9 Identity = 32/92 (34.78%), Postives = 53/92 (57.61%), Query Frame = 2
Query: 236 RREIFRDIARRVPKDKLRLFMTMTQVAAAKAIGISPTTLKKLCRYYGIPRWPYRQIAGKTRAVDRLEELLDEPSSELPKAVLKDHLSLLRCR 511
+R+ ++A+R+P L F + AA+ + +S T LKKLCR YGI RWP+RQ++ +++ +LEE + S + A L+ LR +
Sbjct: 2 KRQTSEEVAKRLPVSVLEEFYHVPLNIAARELSVSLTMLKKLCRQYGIKRWPHRQVSSLNKSLGKLEEKILGASDDKAAAALRAKAGPLRTK 93
BLAST of mRNA_E-fasciculatus_F_contig10253.233.1 vs. uniprot
Match: A0A6H5J9E8_9PHAE (RWP-RK domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9E8_9PHAE) HSP 1 Score: 65.1 bits (157), Expect = 5.670e-9 Identity = 29/62 (46.77%), Postives = 40/62 (64.52%), Query Frame = 2
Query: 317 AAKAIGISPTTLKKLCRYYGIPRWPYRQIAGKTRAVDRLEELLDEPSSELPKAVLKDHLSLL 502
AA+A+G+S LK+ CR YGIPRWPYRQ+ + L+ L++ SE+ +A LKD L L
Sbjct: 27 AARALGVSLNKLKRACRQYGIPRWPYRQVRSIRSTIQSLKNALEKCDSEIERASLKDRLESL 88
BLAST of mRNA_E-fasciculatus_F_contig10253.233.1 vs. uniprot
Match: UPI001ADD4CFD (protein NLP3-like n=1 Tax=Oryza brachyantha TaxID=4533 RepID=UPI001ADD4CFD) HSP 1 Score: 61.6 bits (148), Expect = 7.740e-8 Identity = 25/76 (32.89%), Postives = 53/76 (69.74%), Query Frame = 2
Query: 278 DKLRLFMTMTQVAAAKAIGISPTTLKKLCRYYGIPRWPYRQIAGKTRAVDRLEELLDEPS-SELPKAVLKDHLSLL 502
++L+ + + + AA+++G+ PTT+K++CR +GIPRWP+R+I+ R++D+++ +++ + S P + H +LL
Sbjct: 261 EELQKYFSGSLKDAARSLGVCPTTMKRICRQHGIPRWPFRKISKVNRSLDKMKRVMESVNCSPSPPVAMPAHPALL 336
BLAST of mRNA_E-fasciculatus_F_contig10253.233.1 vs. uniprot
Match: J3L9F5_ORYBR (Uncharacterized protein n=1 Tax=Oryza brachyantha TaxID=4533 RepID=J3L9F5_ORYBR) HSP 1 Score: 61.6 bits (148), Expect = 7.920e-8 Identity = 25/76 (32.89%), Postives = 53/76 (69.74%), Query Frame = 2
Query: 278 DKLRLFMTMTQVAAAKAIGISPTTLKKLCRYYGIPRWPYRQIAGKTRAVDRLEELLDEPS-SELPKAVLKDHLSLL 502
++L+ + + + AA+++G+ PTT+K++CR +GIPRWP+R+I+ R++D+++ +++ + S P + H +LL
Sbjct: 302 EELQKYFSGSLKDAARSLGVCPTTMKRICRQHGIPRWPFRKISKVNRSLDKMKRVMESVNCSPSPPVAMPAHPALL 377
BLAST of mRNA_E-fasciculatus_F_contig10253.233.1 vs. uniprot
Match: A0A0D9VBZ3_9ORYZ (Uncharacterized protein n=1 Tax=Leersia perrieri TaxID=77586 RepID=A0A0D9VBZ3_9ORYZ) HSP 1 Score: 61.6 bits (148), Expect = 8.300e-8 Identity = 26/79 (32.91%), Postives = 54/79 (68.35%), Query Frame = 2
Query: 269 VPKDKLRLFMTMTQVAAAKAIGISPTTLKKLCRYYGIPRWPYRQIAGKTRAVDRLEELLDEPS-SELPKAVLKDHLSLL 502
V ++L+ + + + AA+++G+ PTT+K++CR +GIPRWP+R+I+ R++D+++ +++ + S P + H +LL
Sbjct: 420 VTLEELQKYFSGSLKDAARSLGVCPTTMKRICRQHGIPRWPFRKISKVNRSLDKMKRVMESVNCSPSPPVAVPAHPALL 498
BLAST of mRNA_E-fasciculatus_F_contig10253.233.1 vs. uniprot
Match: A0A0E0JV98_ORYPU (Uncharacterized protein n=1 Tax=Oryza punctata TaxID=4537 RepID=A0A0E0JV98_ORYPU) HSP 1 Score: 61.2 bits (147), Expect = 1.120e-7 Identity = 24/63 (38.10%), Postives = 46/63 (73.02%), Query Frame = 2
Query: 317 AAKAIGISPTTLKKLCRYYGIPRWPYRQIAGKTRAVDRLEELLDEPS-SELPKAVLKDHLSLL 502
AA+++G+ PTT+K++CR +GIPRWP+R+I+ R++D+++ +++ + S P + H +LL
Sbjct: 415 AARSLGVCPTTMKRICRQHGIPRWPFRKISKVNRSLDKMKRVMESVNCSASPPVAMPAHPALL 477 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10253.233.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig10253.233.1 >prot_E-fasciculatus_F_contig10253.233.1 ID=prot_E-fasciculatus_F_contig10253.233.1|Name=mRNA_E-fasciculatus_F_contig10253.233.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=130bp MKAENTLHVHVPPSRCQGEKLGRREIFRDIARRVPKDKLRLFMTMTQVAAback to top mRNA from alignment at E-fasciculatus_F_contig10253:494..1505- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig10253.233.1 ID=mRNA_E-fasciculatus_F_contig10253.233.1|Name=mRNA_E-fasciculatus_F_contig10253.233.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1012bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10253:494..1505- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10253:494..1505- >mRNA_E-fasciculatus_F_contig10253.233.1 ID=mRNA_E-fasciculatus_F_contig10253.233.1|Name=mRNA_E-fasciculatus_F_contig10253.233.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=780bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10253:494..1505- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |