mRNA_E-fasciculatus_F_contig1025.230.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1025.230.1 vs. uniprot
Match: D8LSL4_ECTSI (Ion channel nompc n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSL4_ECTSI) HSP 1 Score: 161 bits (408), Expect = 2.900e-49 Identity = 87/112 (77.68%), Postives = 96/112 (85.71%), Query Frame = 1 Query: 1 VEGDTDSIDLLLGAAPSTVNRATKDG-TPLCVACEFGQAQAVLCLLPTGATSKGIPCPLMTATANGHESVIRVLLGTKEQIEAFGGVEKIPSALYHAVQKLASCAILDVLLS 333
+EGDT+SI LLL AAPST+NRATK G TPLCVACEFGQAQ V LL ATSK +PCPL TATANGHESV+RVLLGTKE+I+AFGGV+K+PSAL HAVQK SCAIL VLLS
Sbjct: 1 MEGDTESITLLLEAAPSTMNRATKGGMTPLCVACEFGQAQVVSRLLSAEATSKWMPCPLATATANGHESVVRVLLGTKERIKAFGGVDKLPSALCHAVQKHNSCAILLVLLS 112 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1025.230.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 1 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1025.230.1 >prot_E-fasciculatus_F_contig1025.230.1 ID=prot_E-fasciculatus_F_contig1025.230.1|Name=mRNA_E-fasciculatus_F_contig1025.230.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=111bp VEGDTDSIDLLLGAAPSTVNRATKDGTPLCVACEFGQAQAVLCLLPTGATback to top mRNA from alignment at E-fasciculatus_F_contig1025:16409..16741- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1025.230.1 ID=mRNA_E-fasciculatus_F_contig1025.230.1|Name=mRNA_E-fasciculatus_F_contig1025.230.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=333bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1025:16409..16741- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1025:16409..16741- >mRNA_E-fasciculatus_F_contig1025.230.1 ID=mRNA_E-fasciculatus_F_contig1025.230.1|Name=mRNA_E-fasciculatus_F_contig1025.230.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=666bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1025:16409..16741- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |