mRNA_E-fasciculatus_F_contig1025.228.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1025.228.1
Unique NamemRNA_E-fasciculatus_F_contig1025.228.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1025.228.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1025contigE-fasciculatus_F_contig1025:176..2894 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-09_002100.1
Exons5
Model size663
Cds size663
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1025.228.1prot_E-fasciculatus_F_contig1025.228.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1025 176..2894 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927526.9392474-CDS-E-fasciculatus_F_contig1025:175..3761622927526.9392474-CDS-E-fasciculatus_F_contig1025:175..376Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1025 176..376 -
1695995578.968682-CDS-E-fasciculatus_F_contig1025:175..3761695995578.968682-CDS-E-fasciculatus_F_contig1025:175..376Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1025 176..376 -
1622927526.948819-CDS-E-fasciculatus_F_contig1025:831..10071622927526.948819-CDS-E-fasciculatus_F_contig1025:831..1007Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1025 832..1007 -
1695995578.9781082-CDS-E-fasciculatus_F_contig1025:831..10071695995578.9781082-CDS-E-fasciculatus_F_contig1025:831..1007Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1025 832..1007 -
1622927526.9607718-CDS-E-fasciculatus_F_contig1025:1485..16271622927526.9607718-CDS-E-fasciculatus_F_contig1025:1485..1627Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1025 1486..1627 -
1695995578.986901-CDS-E-fasciculatus_F_contig1025:1485..16271695995578.986901-CDS-E-fasciculatus_F_contig1025:1485..1627Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1025 1486..1627 -
1622927526.9688737-CDS-E-fasciculatus_F_contig1025:2194..22431622927526.9688737-CDS-E-fasciculatus_F_contig1025:2194..2243Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1025 2195..2243 -
1695995578.9958515-CDS-E-fasciculatus_F_contig1025:2194..22431695995578.9958515-CDS-E-fasciculatus_F_contig1025:2194..2243Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1025 2195..2243 -
1622927526.9780765-CDS-E-fasciculatus_F_contig1025:2799..28941622927526.9780765-CDS-E-fasciculatus_F_contig1025:2799..2894Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1025 2800..2894 -
1695995579.0047011-CDS-E-fasciculatus_F_contig1025:2799..28941695995579.0047011-CDS-E-fasciculatus_F_contig1025:2799..2894Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1025 2800..2894 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1025.228.1

>prot_E-fasciculatus_F_contig1025.228.1 ID=prot_E-fasciculatus_F_contig1025.228.1|Name=mRNA_E-fasciculatus_F_contig1025.228.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=221bp
MNHGSNDTTWEYVRPSSSFQNAGHYAPPSTPRVHAFPALPRTEPTDWKGQ
PPVGGVGMDICKGRHNPYRGGFTSFDLRFTYLREGGHQVSRSPGPGNYDT
RHLTGGALVKRPKTPSPCFRRPGGRLDFGVGGTWHKETPLESAEGYGTVR
GNLKKQAQHYSQSFRSKADRLAVNKPAKTTHEGIGPGCYDLSKDGKSVGV
WTEKRVGRGGRGRMGPTNQFL
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mRNA from alignment at E-fasciculatus_F_contig1025:176..2894-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1025.228.1 ID=mRNA_E-fasciculatus_F_contig1025.228.1|Name=mRNA_E-fasciculatus_F_contig1025.228.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2719bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1025:176..2894- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAACCACGGGAGCAACGACACCACCTGGGAGTACGTTCGGCCATCATC
TAGTTTCCAGAACGCGGGGCATTATGCGCCCCCATCAACCCCAAGGTGGA
TCGTCTCGCTGGGTGGTAACCGTGGTTCAGAGAATACCAAACATAGCATC
TTGACAGCAGGTGCTACAGTCTAAACACTTGTGCCCCATTTGTACAGTAG
GAAGGTTATACTGTAGTGACCATCGTAGCGCGGGCAGCACTCTCGCATCC
TTGCGACACGTAGGTGTACTGTCAGTCAAGAATGTTGTAGAGGTCGATGC
TATACTGTACTGTAGAGACAACATACATGAAATACCAGCTGACAACGCGC
CAAGCGTGTTCGCTGTCAAGCCGGCCGGAAGACTGACGTCTTTACAATGG
TCAGCAATTTAGTGCAGAGTCGAGCTTATTTGAACATTACACATGTGTGC
CTCCACACTTTGAAGATGCCACGAACCTGCACTGCGTGTGTCCTACTGTG
GAGTATGAAATTGGAATGACAGCATCTACCGCCAGGCTGCTGTGCATGAT
ATTTAGACTACAGCTCGTTTCCGTGCGTCTTGTCGTTTTTCTTTTATCTA
TTGTACATACTGCTGTTGGGTCGCGCCGCGGTGAATGGGCTTCGTGCGTA
GGGTGCATGCCTTCCCAGCTTTGCCGAGGACGGAGCCGACGGATTGGAAG
GTACCATTGTTCTCCACACGGCCAGTCCTCTTGACCCCGAGTTCGTGTCC
GCTCAATCTCGTCTACAGATTATTGTCCGTCATTTAAATCGCGATTATCG
ATGGAAGTTACGTGTCTCAAGTTGTACCCAACTGTGATCGCTCGCACTCT
CAATGAGTCCTCTGGTTGCGCTTTTTCTGTTCTTGCGAAACCCTCCGCGT
CCCTCACCACATCGGTTTTAACCAAAAAGCCAGAATTCGGCTGTGATTGA
GCCTGTGTCGTTGCAGTATTTGGCAGCGAATCTTCCGCGCTATTTCACTG
TTATCATGTACCACCATCAGGACACCCTTGAAACGCATCACCTTCTTGCA
GTTGTGACAGAGTTTGTACCACGAGTGAGTTCCTCCACTGCGGAGACATT
CACTTCTGAAAACAGTGAAGTTCGTTATCCACACAAACATTATAGCCCCG
TCCAAGAGTCGGTTGATTGTCAACTACAATAGCAGCACATGCCAACACTA
GCCGTCGCACCACCAACAACCTGGATGCGTGAACACAACCGTTGTGCTAT
TAACACTATCAATGCAGGGGCAGCCGCCCGTCGGGGGTGTTGGGATGGAT
ATTTGCAAGGGCCGTCACAATCCGTATCGTGGAGGGTTTACGTCGTTCGA
CCTCCGCTTCACATACCTCAGGGAAGGCGGGCATCAAGTGTCTCGATCGC
CGGGGCCCGGTGAGCAAAGCTAAAGACATACATGATTCTAAACACAACCG
CCTGATGCGGATACTCCGTGCAATCGTTCCAATTTGGACAGCAGGTAGTC
GTACATGGTGCAAGATTGCCAGGACCTCCAGAACGATTCACGACACTCAG
GACAAACAAAAGGACAGCACACTGGTCACGGTTAAATTTTAAGATTCACT
CTACCTATACTACGGGGATTCCTAGTTTCACCCAACTACCTCGACATATT
TCGCCGACCTGGCACCCGGTATGAAGTGGTTCTCAACACGTTTCCAGAAC
TGTTCACTGGCATGTCACGGTCGAGGTACGTTGGTCTCGAGTCGAGCCTC
TGTTCCCATAGGCCAGTTGATCGAGAGCTTTTCGAAGAGCGCATCGGAGT
GCCAGACCTGATGGTTGTGCTGTCAGGCAGAGAACTGGCTTGCAAAATCA
CTACCTGCTCATGCATCTATTGACCCACCTGCTGCAGGCAACTACGATAC
TCGACACCTTACCGGCGGTGCCCTGGTAAAGCGTCCTAAGACCCCGTCCC
CGTGCTTCCGTCGTCCCGGTGGCCGGCTGGACTTCGGTGTCGGTGGGACT
TGGCACAAGGAAACGCCACTCGAGAGCGCTGAGGGGTACGGCACTGTTCG
GGGCAACTTGAAGGTGATGAGTTCCGGCCGTGACCCGCTACACCATGTAC
TCTCGAGTTCGACCGTGCTTCTTCTCTTGTCGAATAGAGCTGTTTTACAG
CAAGCTCAGCGAGTGACTTGAGCGATGTATGCCTACGTGGCTGTGTGGAA
CAGCACGATCTCAAACGCGTCAGCAACGTACCGAACCGCTCGCTGGTGTG
GCACGAGAAAATCGTATACTTCGCCTTGACAGATGCATTCAAGGGGCGCC
TAACCTTCGATATAGGCAGCCGAGCAACTGCTTCAAGCTTGTTGAATCTT
GGTGTGAGACCGCAACCACGTCGCTTTTGCGATTGGGAATTGTCCATCTC
GGAAAACGCCCACCAAGATAGGAGGCAGACACGTATTCCCTCGCCCGTCC
CTGCTCCATGCGAATTCATTCCCGTCCCACCACCCGTTCGAAACCACCCC
AAATCCCAACCCCACCAGAAACAAGCTCAGCACTACAGCCAAAGCTTTCG
TTCGAAGGCGGATAGGCTAGCGGTCAACAAACCTGCCAAGACCACCCACG
AAGGCATCGGTCCCGGCTGCTACGACCTCTCCAAGGATGGCAAGTCTGTC
GGGGTATGGACGGAGAAGCGGGTGGGCCGAGGAGGTCGGGGAAGAATGGG
ACCGACTAACCAGTTCCTA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1025:176..2894-

>mRNA_E-fasciculatus_F_contig1025.228.1 ID=mRNA_E-fasciculatus_F_contig1025.228.1|Name=mRNA_E-fasciculatus_F_contig1025.228.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1326bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1025:176..2894- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAACCACGGGAGCAACGACACCACCTGGGAGTACGTTCGGCCATCATC
TAGTTTCCAGAACGCGGGGCATTATGCGCCCCCATCAACCCCAAGATGAA
CCACGGGAGCAACGACACCACCTGGGAGTACGTTCGGCCATCATCTAGTT
TCCAGAACGCGGGGCATTATGCGCCCCCATCAACCCCAAGGGTGCATGCC
TTCCCAGCTTTGCCGAGGACGGAGCCGACGGATTGGAAGGGTGCATGCCT
TCCCAGCTTTGCCGAGGACGGAGCCGACGGATTGGAAGGGGCAGCCGCCC
GTCGGGGGTGTTGGGATGGATATTTGCAAGGGCCGTCACAATCCGTATCG
TGGAGGGTTTACGTCGTTCGACCTCCGCTTCACATACCTCAGGGAAGGCG
GGCATCAAGTGTCTCGATCGCCGGGGCCCGGGGCAGCCGCCCGTCGGGGG
TGTTGGGATGGATATTTGCAAGGGCCGTCACAATCCGTATCGTGGAGGGT
TTACGTCGTTCGACCTCCGCTTCACATACCTCAGGGAAGGCGGGCATCAA
GTGTCTCGATCGCCGGGGCCCGGCAACTACGATACTCGACACCTTACCGG
CGGTGCCCTGGTAAAGCGTCCTAAGACCCCGTCCCCGTGCTTCCGTCGTC
CCGGTGGCCGGCTGGACTTCGGTGTCGGTGGGACTTGGCACAAGGAAACG
CCACTCGAGAGCGCTGAGGGGTACGGCACTGTTCGGGGCAACTTGAAGGC
AACTACGATACTCGACACCTTACCGGCGGTGCCCTGGTAAAGCGTCCTAA
GACCCCGTCCCCGTGCTTCCGTCGTCCCGGTGGCCGGCTGGACTTCGGTG
TCGGTGGGACTTGGCACAAGGAAACGCCACTCGAGAGCGCTGAGGGGTAC
GGCACTGTTCGGGGCAACTTGAAGAAACAAGCTCAGCACTACAGCCAAAG
CTTTCGTTCGAAGGCGGATAGGCTAGCGGTCAACAAACCTGCCAAGACCA
CCCACGAAGGCATCGGTCCCGGCTGCTACGACCTCTCCAAGGATGGCAAG
TCTGTCGGGGTATGGACGGAGAAGCGGGTGGGCCGAGGAGGTCGGGGAAG
AATGGGACCGACTAACCAGTTCCTAAAACAAGCTCAGCACTACAGCCAAA
GCTTTCGTTCGAAGGCGGATAGGCTAGCGGTCAACAAACCTGCCAAGACC
ACCCACGAAGGCATCGGTCCCGGCTGCTACGACCTCTCCAAGGATGGCAA
GTCTGTCGGGGTATGGACGGAGAAGCGGGTGGGCCGAGGAGGTCGGGGAA
GAATGGGACCGACTAACCAGTTCCTA
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