mRNA_E-fasciculatus_F_contig10240.226.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig10240.226.1 vs. uniprot
Match: D8LG74_ECTSI (Helicase ATP-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG74_ECTSI) HSP 1 Score: 301 bits (772), Expect = 6.320e-97 Identity = 174/210 (82.86%), Postives = 182/210 (86.67%), Query Frame = 1 Query: 1 SQADNALLVKQALHLLEDVMERVDLPASGRGVTQKGEYVYALFGHAGITFDTAQAWLGKLQDMSDTLQENALYGQANALKIDVVARAIKVAFRGGNASRQECLDFATMYRSHIAPAESVSPLDGRGSGRGXXXXXXXXXXXXXXXAAG--RVLCFWCFCPGVAMQDLKALGVRSIIVTSGTLSPLSSFGNELRLPFEVQVENPHVIGPEQ 624 +QADNALLVKQALHLLED ME V LPASG+G TQKGEYVYALF HAGITFDTAQAWLGKLQDMSDTLQENALYGQANALK+DVV+R+IK F GGNAS + FA M R H+A A SPLDGRG G+ XXXXXXXXXXXXXXX RV CFWCFCPGVAMQDLKALGVRSIIVTSGTLSPLSSFGNELRLPFEVQVENPHVIGPEQ Sbjct: 281 TQADNALLVKQALHLLEDAMEGVKLPASGKGFTQKGEYVYALFEHAGITFDTAQAWLGKLQDMSDTLQENALYGQANALKVDVVSRSIKGGFGGGNASGEGGRVFARMSRWHMASAGGGSPLDGRGGGKXXXXXXXXXXXXXXXXXXXXXRVFCFWCFCPGVAMQDLKALGVRSIIVTSGTLSPLSSFGNELRLPFEVQVENPHVIGPEQ 490
BLAST of mRNA_E-fasciculatus_F_contig10240.226.1 vs. uniprot
Match: A0A836CNR1_9STRA (Helicase C-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNR1_9STRA) HSP 1 Score: 124 bits (311), Expect = 2.920e-29 Identity = 82/216 (37.96%), Postives = 117/216 (54.17%), Query Frame = 1 Query: 46 LEDVMERVDLPASG-RGVTQKGEYVYALFGHAGITFDTAQAWLGKLQDMSDTLQENALYGQA------NALKIDVVARAIKVAFRGGNASRQE-----------CLDFATMYRSHIAPAESVSPLDGR-----GSGRGXXXXXXXXXXXXXXXAAGRVLCFWCFCPGVAMQDLKALGVRSIIVTSGTLSPLSSFGNELRLPFEVQVENPHVIGPEQ 624 LE++++ V LPA G +GV+ KG Y++ L IT DT +G+++ A +G A + ID V R ++ AFR A+ C+ A YR H+AP + + G+ G GR RVLC+WCFCPGVAM++L+ALGVRS+++TSGTL+PL S +ELR+PF V++ENPHVIG +Q Sbjct: 313 LENMLDSVRLPAGGDKGVSHKGVYLFDLLRTVDITADT----VGEIE--LALTGAAAYHGTAMPTHSSSTPSIDAVVRCLRTAFRPAAAAXXXXAGVSVDRVAPCIAMAEAYRVHVAPC-APPKVKGKVAAAIGGGR-----------------QARVLCYWCFCPGVAMEELRALGVRSVVLTSGTLAPLPSLASELRVPFPVRLENPHVIGGDQ 504
BLAST of mRNA_E-fasciculatus_F_contig10240.226.1 vs. uniprot
Match: A0A2K3M6Q3_TRIPR (Regulator of telomere elongation helicase 1-like protein (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3M6Q3_TRIPR) HSP 1 Score: 112 bits (281), Expect = 2.210e-27 Identity = 69/205 (33.66%), Postives = 100/205 (48.78%), Query Frame = 1 Query: 10 DNALLVKQALHLLEDVMERVDLPASGRGVTQKGEYVYALFGHAGITFDTAQAWLGKLQDMSDTLQENALYGQANALKIDVVARAIKVAFRGGNASRQECLDFATMYRSHIAPAESVSPLDGRGSGRGXXXXXXXXXXXXXXXAAGRVLCFWCFCPGVAMQDLKALGVRSIIVTSGTLSPLSSFGNELRLPFEVQVENPHVIGPEQ 624 D+ + L LE + V + + G T+ G Y++ L IT TA + K++D SD L+E + +++ + + + FR G S A YR H+ AE+ S +GS R L +WCF PG+A++ GV SII+TSGTLSPL SF EL+L F +++ENPHVIGP Q Sbjct: 10 DDIFFIAALLLKLEKRIAEVYIESKELGFTKPGPYMFELMADLNITHTTAADLMDKIKDASDLLEEKST---GTICRLETIKDILDIIFRDGGTSH------AKYYRVHVKEAEAWSANGSKGS---------------------RTLSWWCFNPGIALEVFAKFGVGSIILTSGTLSPLDSFAGELKLDFPIRLENPHVIGPNQ 184
BLAST of mRNA_E-fasciculatus_F_contig10240.226.1 vs. uniprot
Match: A0A8J6K0T7_ELECQ (Regulator of telomere elongation helicase 1 n=1 Tax=Eleutherodactylus coqui TaxID=57060 RepID=A0A8J6K0T7_ELECQ) HSP 1 Score: 115 bits (289), Expect = 2.740e-26 Identity = 74/204 (36.27%), Postives = 106/204 (51.96%), Query Frame = 1 Query: 25 VKQALHLLEDVMERVDLPASGRGVTQKGEYVYALFGHAGITFDTAQAWLGKLQDMSDTLQENALYGQANALKIDVVARAIKVAFR----GGNASRQECLDFATMYRSHIAPAESVSPLDGRGSGRGXXXXXXXXXXXXXXXAAGRVLCFWCFCPGVAMQDLKALGVRSIIVTSGTLSPLSSFGNELRLPFEVQVENPHVIGPEQ 624 +K +L LE ++ + LPA+G GVT++G Y++ LF AGIT++ L L + + ++ N L + + I++ F G+A+ L + Y+ HI P S R RG G+VL +WCF PG M DL+ GVRSII+TSGTL PLSSF E+++PF V +ENPHVI Q Sbjct: 270 IKGSLLQLESSIDAITLPANGNGVTKEGSYIFELFASAGITYENRTGLLELLDQIIQHVGGSSGVF-TNTLGLQKLCDIIQIVFNIDVPEGSAAPTRNLQVSKSYKVHIHPDSS------RKKPRGDIWSNSRKQ-------GGKVLSYWCFSPGYTMNDLERQGVRSIILTSGTLCPLSSFTMEMKIPFPVTLENPHVIEKHQ 459
BLAST of mRNA_E-fasciculatus_F_contig10240.226.1 vs. uniprot
Match: A0A833QJ34_9POAL (Regulator of telomere elongation helicase 1 n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833QJ34_9POAL) HSP 1 Score: 115 bits (289), Expect = 2.750e-26 Identity = 70/212 (33.02%), Postives = 107/212 (50.47%), Query Frame = 1 Query: 10 DNALLVKQALHLLEDVMERVDLPASGRGVTQKGEYVYALFGHAGITFDTAQAWLGKLQDMSDTLQE--NALYG-----QANALKIDVVARAIKVAFRGGNASRQECLDFATMYRSHIAPAESVSPLDGRGSGRGXXXXXXXXXXXXXXXAAGRVLCFWCFCPGVAMQDLKALGVRSIIVTSGTLSPLSSFGNELRLPFEVQVENPHVIGPEQ 624 DN ++K L LE + V + + +G T+ G Y+Y ITF+TA + +++ + L+E NA G + +++ + + + FR G S + YR H+ ++S +G+ R L +WCF PG+AMQ+ + LGVRSII+TSGTLSPL SF EL L F +++ENPHVI P+Q Sbjct: 297 DNYAILKALLTKLEKKVGEVVIQSKEQGFTRPGSYIYEFLSDLNITFETANMLMDTIENAAQLLEEGNNAASGAETKPKGTVCRLETIRDVLNIIFRDGGKSH------SLFYRFHVQESQSNYSESFKGT-------------------TSRTLSWWCFNPGLAMQEFEKLGVRSIILTSGTLSPLDSFALELNLDFPIRLENPHVIDPDQ 483
BLAST of mRNA_E-fasciculatus_F_contig10240.226.1 vs. uniprot
Match: UPI0008545209 (regulator of telomere elongation helicase 1-like n=1 Tax=Nanorana parkeri TaxID=125878 RepID=UPI0008545209) HSP 1 Score: 115 bits (289), Expect = 2.770e-26 Identity = 74/214 (34.58%), Postives = 110/214 (51.40%), Query Frame = 1 Query: 4 QADNALLVKQALHLLEDVMERVDLPASGRGVTQKGEYVYALFGHAGITFDTAQAWLGKLQDMSDTLQENALYGQA---NALKIDVVARAIKVAFR----GGNASRQECLDFATMYRSHIAPAESVSPLDGRGSGRGXXXXXXXXXXXXXXXAAGRVLCFWCFCPGVAMQDLKALGVRSIIVTSGTLSPLSSFGNELRLPFEVQVENPHVIGPEQ 624 Q ++ +K AL LE+ ++ + LPA+G GVT+ G Y++ LFG GI ++T G L D+ + + ++ N L + ++ +++ F G+ S + Y+ HI P +S RG G+VL +WCF PG M DL GVRSII+TSGTL PLSSF E+++PF+V +ENPHVI Q Sbjct: 150 QIEDLAKIKGALLQLENAIDAISLPANGTGVTKDGSYIFELFGSVGINYNTK----GDLLDLLEQIIQHVGGSSGVFTNTLGLQKLSDILQIIFNIESPEGSTSVINTKQVSRYYKVHIHP-DSSQKKKPRGD-----------VWSNSRKQGGKVLSYWCFSPGYTMHDLVRQGVRSIILTSGTLCPLSSFTMEMQIPFKVSLENPHVIEKHQ 347
BLAST of mRNA_E-fasciculatus_F_contig10240.226.1 vs. uniprot
Match: UPI001AAD8894 (regulator of telomere elongation helicase 1 isoform X1 n=2 Tax=Rana temporaria TaxID=8407 RepID=UPI001AAD8894) HSP 1 Score: 115 bits (289), Expect = 2.830e-26 Identity = 76/212 (35.85%), Postives = 110/212 (51.89%), Query Frame = 1 Query: 4 QADNALLVKQALHLLEDVMERVDLPASGRGVTQKGEYVYALFGHAGITFDTAQAWLGKLQDMSDTLQ-ENALYGQANALKIDVVARAIKVAFR----GGNASRQECLDFATMYRSHIAPAESVSPLDGRGSGRGXXXXXXXXXXXXXXXAAGRVLCFWCFCPGVAMQDLKALGVRSIIVTSGTLSPLSSFGNELRLPFEVQVENPHVIGPEQ 624 Q ++ +K AL +E ++ V LPASG GVT+ G Y++ LF AGIT++T L L+ + + + ++ N L + ++ I++ F G+ + + Y+ HI P S R RG G+VL +WCF PG M DL GVRSII+TSGTL PLSSF E+++PF+V +ENPHVI Q Sbjct: 311 QLEDLAKIKGALLQIERTIDAVTLPASGTGVTRDGSYIFELFASAGITYNTKTDLLELLEQIIQHVGGRSGIF--TNTLGLQKLSDIIQIVFNIEIPEGSTAVINTKQVSRYYKVHIHPDNSQ-----RKKPRGDVWSNSKKH-------GGKVLSYWCFSPGYTMNDLVRQGVRSIILTSGTLCPLSSFTMEMQIPFQVSLENPHVIEKHQ 508
BLAST of mRNA_E-fasciculatus_F_contig10240.226.1 vs. uniprot
Match: A0A0D2WMW4_CAPO3 (DNA helicase n=3 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2WMW4_CAPO3) HSP 1 Score: 115 bits (289), Expect = 2.880e-26 Identity = 74/207 (35.75%), Postives = 105/207 (50.72%), Query Frame = 1 Query: 4 QADNALLVKQALHLLEDVMERVDLPASGRGVTQKGEYVYALFGHAGITFDTAQAWLGKLQDMSDTLQENALYGQANALKIDVVARAIKVAFRGGNASRQECLDFATMYRSHIAPAESVSPLDGRGSGRGXXXXXXXXXXXXXXXAAGRVLCFWCFCPGVAMQDLKALGVRSIIVTSGTLSPLSSFGNELRLPFEVQVENPHVIGPEQ 624 + D+ LL+K+ L +E + L G T G +++ LF +TF+T L + + + L E + ++ + A +K F N + + YR HI E+ P+ SG G AAGR L FWCF PG AM+DL +GVRSII+TSGTLSPL+SFG E++LPF + +ENPHVI Q Sbjct: 383 EPDDLLLLKKVLLRIESAIAETPLHPQD-GFTAHGTFIFDLFRSFNLTFETFSPVLELINSVIEALAEARGTRTSASISLSKFADVLKTMFTEENKVNMDGI--RKYYRCHIGQ-EAAKPVTKASSGWGSTVHVAPS-------AAGRTLSFWCFSPGFAMRDLTKIGVRSIILTSGTLSPLASFGAEMQLPFPITLENPHVISKSQ 578
BLAST of mRNA_E-fasciculatus_F_contig10240.226.1 vs. uniprot
Match: UPI001CF7B753 (regulator of telomere elongation helicase 1 isoform X1 n=7 Tax=Varanus komodoensis TaxID=61221 RepID=UPI001CF7B753) HSP 1 Score: 115 bits (287), Expect = 5.300e-26 Identity = 69/204 (33.82%), Postives = 103/204 (50.49%), Query Frame = 1 Query: 25 VKQALHLLEDVMERVDLPASGRGVTQKGEYVYALFGHAGITFDTAQAWLGKLQDMSDTL---QENALYGQANALK-IDVVARAIKVAFRGGNASRQECLDFATMYRSHIAPAESVSPLDGRGSGRGXXXXXXXXXXXXXXXAAGRVLCFWCFCPGVAMQDLKALGVRSIIVTSGTLSPLSSFGNELRLPFEVQVENPHVIGPEQ 624 +KQ L LE+ ++ ++LPA G G+T+ G Y++ LF A ITF T + L L+ ++ L + A K +D++ GG ++ + Y+ HI P + R G+VL +WCF PG +M +L GVR+II+TSGTLSP+SSF E+++PF V +ENPHVI Q Sbjct: 318 IKQILLQLENTIDAIELPAGGSGLTKDGSYIFELFASAQITFQTQRCLLESLEQITQYLAAVRSGIFVNTAGLHKLVDIIQTVFNFDSSGGTSNSTPYCSASKHYKVHIHPDVNNQKRKQR----------TDLWNSSVTKKQGKVLSYWCFSPGYSMHELVRQGVRTIILTSGTLSPISSFTMEMQIPFPVCLENPHVIEKHQ 511
BLAST of mRNA_E-fasciculatus_F_contig10240.226.1 vs. uniprot
Match: UPI001C4BC33E (regulator of telomere elongation helicase 1 isoform X1 n=6 Tax=Sceloporus undulatus TaxID=8520 RepID=UPI001C4BC33E) HSP 1 Score: 114 bits (285), Expect = 9.830e-26 Identity = 70/203 (34.48%), Postives = 101/203 (49.75%), Query Frame = 1 Query: 25 VKQALHLLEDVMERVDLPASGRGVTQKGEYVYALFGHAGITFDTAQAWLGKLQDMSDTL--QENALYGQANALKI-DVVARAIKVAFRGGNASRQECLDFATMYRSHIAPAESVSPLDGRGSGRGXXXXXXXXXXXXXXXAAGRVLCFWCFCPGVAMQDLKALGVRSIIVTSGTLSPLSSFGNELRLPFEVQVENPHVIGPEQ 624 +K+ L LED ++ V+LPA G G+T++G Y++ LF A +TF T + L L+ + L + A K D++ G +S + Y+ HI P S R G+VL +WCF PG +M +L GVR+II+TSGTLSP+SSF E+++PF V +ENPHVI Q Sbjct: 318 IKRILLQLEDTIDAVELPADGTGLTKEGSYIFDLFAKAQLTFQTQSSILESLEQIIQYLAGRTRIFTNTAGLHKFTDIIQTVFSFGPSEGTSSSTSSCSVSKYYKVHIHPDMSNQKKKQRSD----------LWNSSVTRKQGKVLSYWCFSPGYSMHELVRQGVRTIILTSGTLSPVSSFAMEMQIPFPVCLENPHVIDKHQ 510 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10240.226.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig10240.226.1 >prot_E-fasciculatus_F_contig10240.226.1 ID=prot_E-fasciculatus_F_contig10240.226.1|Name=mRNA_E-fasciculatus_F_contig10240.226.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=208bp SQADNALLVKQALHLLEDVMERVDLPASGRGVTQKGEYVYALFGHAGITFback to top mRNA from alignment at E-fasciculatus_F_contig10240:289..3122- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig10240.226.1 ID=mRNA_E-fasciculatus_F_contig10240.226.1|Name=mRNA_E-fasciculatus_F_contig10240.226.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2834bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10240:289..3122- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10240:289..3122- >mRNA_E-fasciculatus_F_contig10240.226.1 ID=mRNA_E-fasciculatus_F_contig10240.226.1|Name=mRNA_E-fasciculatus_F_contig10240.226.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1248bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10240:289..3122- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |