mRNA_E-fasciculatus_F_contig10236.222.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig10236.222.1
Unique NamemRNA_E-fasciculatus_F_contig10236.222.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig10236.222.1 vs. uniprot
Match: A0A6H5K128_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K128_9PHAE)

HSP 1 Score: 208 bits (530), Expect = 6.800e-61
Identity = 97/99 (97.98%), Postives = 97/99 (97.98%), Query Frame = 1 
Query:   22 GIPLVLANDPDGDRLAAAERQPSGDWYVFSGNEIGTLLGVWQWEEWRRTHPEEDASNAVMIASTVSSKMLSAVARFEGFTFEETLPGFKWMGHRGQQLK 318
            GIP VLANDPDGDRLAAAERQPSGDWYVFSGNEIGTLLGVWQWEEWRR HPEEDASNAVMIASTVSSKMLSAVARFEGFTFEETLPGFKWMGHRGQQLK
Sbjct:  397 GIPFVLANDPDGDRLAAAERQPSGDWYVFSGNEIGTLLGVWQWEEWRRKHPEEDASNAVMIASTVSSKMLSAVARFEGFTFEETLPGFKWMGHRGQQLK 495
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BLAST of mRNA_E-fasciculatus_F_contig10236.222.1 vs. uniprot
Match: D7G3G9_ECTSI (Bifunctional Aldehyde Dehydrogenase/Phosphoglucomutase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3G9_ECTSI)

HSP 1 Score: 165 bits (418), Expect = 2.610e-45
Identity = 76/79 (96.20%), Postives = 77/79 (97.47%), Query Frame = 1 
Query:   82 QPSGDWYVFSGNEIGTLLGVWQWEEWRRTHPEEDASNAVMIASTVSSKMLSAVARFEGFTFEETLPGFKWMGHRGQQLK 318
            QPSGDWYVFSGNEIGTLLGVWQWEEWRR H +EDASNAVMIASTVSSKMLSAVARFEGFTFEETLPGFKWMGHRGQQLK
Sbjct:  520 QPSGDWYVFSGNEIGTLLGVWQWEEWRRKHADEDASNAVMIASTVSSKMLSAVARFEGFTFEETLPGFKWMGHRGQQLK 598
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BLAST of mRNA_E-fasciculatus_F_contig10236.222.1 vs. uniprot
Match: A0A485LAK5_9STRA (Aste57867_18499 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LAK5_9STRA)

HSP 1 Score: 135 bits (341), Expect = 3.470e-35
Identity = 61/106 (57.55%), Postives = 77/106 (72.64%), Query Frame = 1 
Query:    1 FRNTHIPGIPLVLANDPDGDRLAAAERQPSGDWYVFSGNEIGTLLGVWQWEEWRRTHPEEDASNAVMIASTVSSKMLSAVARFEGFTFEETLPGFKWMGHRGQQLK 318
            F      G  L+LANDPD DRLA AE+ PSG+W++F+GNEIGTLLG WQ+++  + HP  D S   ++ASTVSSKML  +AR EGF F ETL GFKWMG+  Q+L+
Sbjct:  301 FETAQKHGCTLILANDPDADRLAVAEQLPSGEWHLFTGNEIGTLLGYWQYQQHMKAHPTADKSQLYVVASTVSSKMLRTIARREGFNFVETLTGFKWMGNETQKLR 406
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BLAST of mRNA_E-fasciculatus_F_contig10236.222.1 vs. uniprot
Match: A0A6G0XXF9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XXF9_9STRA)

HSP 1 Score: 135 bits (341), Expect = 3.520e-35
Identity = 63/99 (63.64%), Postives = 76/99 (76.77%), Query Frame = 1 
Query:   22 GIPLVLANDPDGDRLAAAERQPSGDWYVFSGNEIGTLLGVWQWEEWRRTHPEEDASNAVMIASTVSSKMLSAVARFEGFTFEETLPGFKWMGHRGQQLK 318
            G  LVLANDPD DRLA AE  PSG+WYVF+GNEIGTLLG W++ ++ + HP  D S   +IASTVSSKML A+AR EGF F ETL GFKWMG+  ++L+
Sbjct:  310 GCSLVLANDPDADRLAVAELLPSGEWYVFTGNEIGTLLGHWEFVQYMKQHPTADKSQLYVIASTVSSKMLRAIARREGFNFVETLTGFKWMGNEAKRLR 408
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BLAST of mRNA_E-fasciculatus_F_contig10236.222.1 vs. uniprot
Match: H2KRW5_CLOSI (Phosphoglucomutase n=5 Tax=Opisthorchiidae TaxID=6196 RepID=H2KRW5_CLOSI)

HSP 1 Score: 133 bits (335), Expect = 1.380e-34
Identity = 56/96 (58.33%), Postives = 73/96 (76.04%), Query Frame = 1 
Query:   28 PLVLANDPDGDRLAAAERQPSGDWYVFSGNEIGTLLGVWQWEEWRRTHPEEDASNAVMIASTVSSKMLSAVARFEGFTFEETLPGFKWMGHRGQQL 315
            P++LANDPD DRLA AE+QP G W +F+GNE+G + G W W +WR+ +P+ D S   M++STVSSK+L  +A+ EGF FEETL GFKWMG+R  QL
Sbjct:  230 PVILANDPDADRLAVAEKQPDGKWKIFNGNELGAMFGCWIWSQWRKRNPDADPSRYGMLSSTVSSKILDTIAKKEGFYFEETLTGFKWMGNRTDQL 325
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BLAST of mRNA_E-fasciculatus_F_contig10236.222.1 vs. uniprot
Match: A0A183AN93_9TREM (Uncharacterized protein n=1 Tax=Echinostoma caproni TaxID=27848 RepID=A0A183AN93_9TREM)

HSP 1 Score: 132 bits (333), Expect = 2.370e-34
Identity = 59/95 (62.11%), Postives = 70/95 (73.68%), Query Frame = 1 
Query:   31 LVLANDPDGDRLAAAERQPSGDWYVFSGNEIGTLLGVWQWEEWRRTHPEEDASNAVMIASTVSSKMLSAVARFEGFTFEETLPGFKWMGHRGQQL 315
            L+LANDPD DRLA AE+Q SG W +FSGNE+G L G W W  WR+ +P  D S   M++STVSSK+L  +A  EGF FEETL GFKWMG+R QQL
Sbjct:  294 LILANDPDADRLAVAEKQASGTWKIFSGNELGALFGWWIWSNWRKRNPNADPSTVGMLSSTVSSKILHTIAEKEGFYFEETLTGFKWMGNRAQQL 388
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BLAST of mRNA_E-fasciculatus_F_contig10236.222.1 vs. uniprot
Match: A0A8E0S1S3_9TREM (Phosphoglucomutase n=1 Tax=Fasciolopsis buski TaxID=27845 RepID=A0A8E0S1S3_9TREM)

HSP 1 Score: 133 bits (335), Expect = 2.420e-34
Identity = 59/96 (61.46%), Postives = 73/96 (76.04%), Query Frame = 1 
Query:   28 PLVLANDPDGDRLAAAERQPSGDWYVFSGNEIGTLLGVWQWEEWRRTHPEEDASNAVMIASTVSSKMLSAVARFEGFTFEETLPGFKWMGHRGQQL 315
            PL+LANDPD DRLA AE+Q +G W +FSGNE+G L G W W  WR+ +P+ DAS   M++STVSSK+L  +A  EGF FEETL GFKWMG+R Q+L
Sbjct:  301 PLILANDPDADRLAVAEKQSNGTWKIFSGNELGALFGWWIWLNWRKRNPKADASKVGMLSSTVSSKILQTMAEQEGFYFEETLTGFKWMGNRAQEL 396
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BLAST of mRNA_E-fasciculatus_F_contig10236.222.1 vs. uniprot
Match: A0A067CVH0_SAPPC (Uncharacterized protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CVH0_SAPPC)

HSP 1 Score: 132 bits (333), Expect = 4.590e-34
Identity = 62/106 (58.49%), Postives = 74/106 (69.81%), Query Frame = 1 
Query:    1 FRNTHIPGIPLVLANDPDGDRLAAAERQPSGDWYVFSGNEIGTLLGVWQWEEWRRTHPEEDASNAVMIASTVSSKMLSAVARFEGFTFEETLPGFKWMGHRGQQLK 318
            F      G  LVLANDPD DRLA AE+ PSG WYV++GNEIGT+LG W++ +    HP+ D  N  +IASTVSSKML A+AR EGF F ETL GFKWMG+    L+
Sbjct:  301 FETAEREGCSLVLANDPDADRLAVAEQLPSGQWYVYTGNEIGTILGHWEYTQHMLAHPDADKDNLYVIASTVSSKMLRAIARKEGFHFVETLTGFKWMGNATSDLR 406
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BLAST of mRNA_E-fasciculatus_F_contig10236.222.1 vs. uniprot
Match: A0A1V9ZQB9_9STRA (Phosphoglucomutase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZQB9_9STRA)

HSP 1 Score: 132 bits (332), Expect = 6.560e-34
Identity = 62/96 (64.58%), Postives = 73/96 (76.04%), Query Frame = 1 
Query:   31 LVLANDPDGDRLAAAERQPSGDWYVFSGNEIGTLLGVWQWEEWRRTHPEEDASNAVMIASTVSSKMLSAVARFEGFTFEETLPGFKWMGHRGQQLK 318
            LVLANDPD DRLA AE  PSG WYVF+GNEIGTLLG W++ ++ R +PE D     +IASTVSSKML A+AR EGF F ETL GFKWMG+   +L+
Sbjct:  317 LVLANDPDADRLAVAELLPSGQWYVFTGNEIGTLLGHWEYTQYMRLNPEADKEQIYVIASTVSSKMLRAIARKEGFNFVETLTGFKWMGNATSELR 412
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BLAST of mRNA_E-fasciculatus_F_contig10236.222.1 vs. uniprot
Match: UPI0014586948 (phosphoglucomutase-2-like n=1 Tax=Pecten maximus TaxID=6579 RepID=UPI0014586948)

HSP 1 Score: 131 bits (330), Expect = 1.210e-33
Identity = 56/91 (61.54%), Postives = 71/91 (78.02%), Query Frame = 1 
Query:   31 LVLANDPDGDRLAAAERQPSGDWYVFSGNEIGTLLGVWQWEEWRRTHPEEDASNAVMIASTVSSKMLSAVARFEGFTFEETLPGFKWMGHR 303
            L+LANDPD DRLA A + PSGDW++FSGNE+G L G W W  +R+ HP+  A +  M+ASTVSSK+L ++A+ EGF FEETL GFKWMG+R
Sbjct:  305 LILANDPDADRLAVAVKLPSGDWHIFSGNELGALFGWWSWNHYRQKHPDTPAKDVYMLASTVSSKILGSIAKKEGFCFEETLTGFKWMGNR 395
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10236.222.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K128_9PHAE6.800e-6197.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G3G9_ECTSI2.610e-4596.20Bifunctional Aldehyde Dehydrogenase/Phosphoglucomu... [more]
A0A485LAK5_9STRA3.470e-3557.55Aste57867_18499 protein n=1 Tax=Aphanomyces stella... [more]
A0A6G0XXF9_9STRA3.520e-3563.64Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
H2KRW5_CLOSI1.380e-3458.33Phosphoglucomutase n=5 Tax=Opisthorchiidae TaxID=6... [more]
A0A183AN93_9TREM2.370e-3462.11Uncharacterized protein n=1 Tax=Echinostoma capron... [more]
A0A8E0S1S3_9TREM2.420e-3461.46Phosphoglucomutase n=1 Tax=Fasciolopsis buski TaxI... [more]
A0A067CVH0_SAPPC4.590e-3458.49Uncharacterized protein n=3 Tax=Saprolegniaceae Ta... [more]
A0A1V9ZQB9_9STRA6.560e-3464.58Phosphoglucomutase n=1 Tax=Thraustotheca clavata T... [more]
UPI00145869481.210e-3361.54phosphoglucomutase-2-like n=1 Tax=Pecten maximus T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10236contigE-fasciculatus_F_contig10236:4172..4961 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score166.0
Seed ortholog evalue9.5e-39
Seed eggNOG ortholog2880.D7G3G9
Preferred nameMSC7
KEGG rclassRC00047,RC00071,RC00080,RC00186,RC00218,RC00242,RC00816,RC01500
KEGG koko:K00128,ko:K10661
KEGG ReactionR00264,R00631,R00710,R00904,R01752,R01986,R02549,R02678,R02940,R02957,R03283,R03869,R04065,R04506,R04903,R05050,R05237,R05238,R05286,R06366,R08146
KEGG Pathwayko00010,ko00053,ko00071,ko00280,ko00310,ko00330,ko00340,ko00380,ko00410,ko00561,ko00620,ko00625,ko00903,ko00981,ko01100,ko01110,ko01120,ko01130,ko04141,map00010,map00053,map00071,map00280,map00310,map00330,map00340,map00380,map00410,map00561,map00620,map00625,map00903,map00981,map01100,map01110,map01120,map01130,map04141
KEGG ModuleM00135
GOsGO:0000003,GO:0000280,GO:0003674,GO:0003824,GO:0004029,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0006139,GO:0006259,GO:0006310,GO:0006725,GO:0006807,GO:0006996,GO:0007049,GO:0007127,GO:0007131,GO:0008150,GO:0008152,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0016043,GO:0016491,GO:0016620,GO:0016903,GO:0022402,GO:0022414,GO:0031224,GO:0034641,GO:0035825,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044425,GO:0044444,GO:0044464,GO:0046483,GO:0048285,GO:0051321,GO:0055114,GO:0061982,GO:0071704,GO:0071840,GO:0090304,GO:0140013,GO:1901360,GO:1903046
EggNOG free text desc.aldehyde dehydrogenase (NAD) activity
EggNOG OGsCOG1012@1,COG1109@1,KOG1220@2759,KOG2454@2759
EC1.2.1.3,2.3.2.27
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04121
Hectar predicted targeting categoryother localisation
Exons2
Model size318
Cds size318
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927526.336776-CDS-E-fasciculatus_F_contig10236:4171..42941622927526.336776-CDS-E-fasciculatus_F_contig10236:4171..4294Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10236 4172..4294 -
1695995578.6604006-CDS-E-fasciculatus_F_contig10236:4171..42941695995578.6604006-CDS-E-fasciculatus_F_contig10236:4171..4294Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10236 4172..4294 -
1622927526.3522136-CDS-E-fasciculatus_F_contig10236:4766..49611622927526.3522136-CDS-E-fasciculatus_F_contig10236:4766..4961Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10236 4767..4961 -
1695995578.6724849-CDS-E-fasciculatus_F_contig10236:4766..49611695995578.6724849-CDS-E-fasciculatus_F_contig10236:4766..4961Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10236 4767..4961 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10236.222.1prot_E-fasciculatus_F_contig10236.222.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig10236 4172..4961 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig10236.222.1

>prot_E-fasciculatus_F_contig10236.222.1 ID=prot_E-fasciculatus_F_contig10236.222.1|Name=mRNA_E-fasciculatus_F_contig10236.222.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=106bp
FRNTHIPGIPLVLANDPDGDRLAAAERQPSGDWYVFSGNEIGTLLGVWQW
EEWRRTHPEEDASNAVMIASTVSSKMLSAVARFEGFTFEETLPGFKWMGH
RGQQLK
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mRNA from alignment at E-fasciculatus_F_contig10236:4172..4961-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig10236.222.1 ID=mRNA_E-fasciculatus_F_contig10236.222.1|Name=mRNA_E-fasciculatus_F_contig10236.222.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=790bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10236:4172..4961- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TTTCGAAACACCCACATTCCAGGCATCCCGCTGGTGCTGGCCAACGATCC
GGACGGGGATCGGCTGGCTGCGGCCGAGAGGCAGCCGTCGGGGGACTGGT
ACGTGTTCTCCGGCAATGAGATCGGGACCTTGCTCGGTGTGTGGCAGTGG
GAGGAGTGGCGGAGGACGCACCCGGAGGAGGACGCCTCCAACGCGGTGAG
TTTGATGGAGGAAGGGCGAGTGAATGGAAGAAGTTTTTTCTCTAACGCTG
TGGTTGATGTGTGGACGAGTGTTTTTTTTGTCTGAAATGTTGGCGTGTAG
TCGCATGCTTCTCTCGTGTTGTGCTGCCTTGTGGTTGTACGTTTTTTTTG
GTTTTGAATCGTTGGTTTGTTGTGTTTTTCGACGCGTGTTCGCGGAACGC
AGCTCTCATGTAGTGCTGCCTTGTGGTACATACCCCTCTATTGCGTGAAT
ATCTTGCTTCGACGAATGTTTTAGGGACCTTCCTCTCGTGTTGTCCTTCC
TTGTGGTGCGTAGAATCGTGGCTTTTCATTCTTGTGGGGCGTGTGGGGAC
ATCACGCGCGCCTTGGGGCTTCCGATTCCCCGGGCGACGGTAGAGAGACA
AATTGAAATGAAACACGTCTCTCTCTTGCTTTCTTTTTCTGTTGTGTCGT
GACTGATTTTTTAACAGGTTATGATCGCCAGCACTGTATCCTCCAAGATG
CTGTCAGCGGTGGCGAGGTTCGAAGGCTTCACCTTCGAAGAGACGCTGCC
GGGCTTCAAGTGGATGGGGCACCGCGGCCAGCAACTGAAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10236:4172..4961-

>mRNA_E-fasciculatus_F_contig10236.222.1 ID=mRNA_E-fasciculatus_F_contig10236.222.1|Name=mRNA_E-fasciculatus_F_contig10236.222.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=636bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10236:4172..4961- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TTTCGAAACACCCACATTCCAGGCATCCCGCTGGTGCTGGCCAACGATCC
GGACGGGGATCGGCTGGCTGCGGCCGAGAGGCAGCCGTCGGGGGACTGGT
ACGTGTTCTCCGGCAATGAGATCGGGACCTTGCTCGGTGTGTGGCAGTGG
GAGGAGTGGCGGAGGACGCACCCGGAGGAGGACGCCTCCAACGCGTTTCG
AAACACCCACATTCCAGGCATCCCGCTGGTGCTGGCCAACGATCCGGACG
GGGATCGGCTGGCTGCGGCCGAGAGGCAGCCGTCGGGGGACTGGTACGTG
TTCTCCGGCAATGAGATCGGGACCTTGCTCGGTGTGTGGCAGTGGGAGGA
GTGGCGGAGGACGCACCCGGAGGAGGACGCCTCCAACGCGGTTATGATCG
CCAGCACTGTATCCTCCAAGATGCTGTCAGCGGTGGCGAGGTTCGAAGGC
TTCACCTTCGAAGAGACGCTGCCGGGCTTCAAGTGGATGGGGCACCGCGG
CCAGCAACTGAAGGTTATGATCGCCAGCACTGTATCCTCCAAGATGCTGT
CAGCGGTGGCGAGGTTCGAAGGCTTCACCTTCGAAGAGACGCTGCCGGGC
TTCAAGTGGATGGGGCACCGCGGCCAGCAACTGAAG
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