mRNA_E-fasciculatus_F_contig1023.219.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1023.219.1
Unique NamemRNA_E-fasciculatus_F_contig1023.219.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1023.219.1 vs. uniprot
Match: D8LT25_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT25_ECTSI)

HSP 1 Score: 186 bits (472), Expect = 1.010e-56
Identity = 84/89 (94.38%), Postives = 88/89 (98.88%), Query Frame = 3 
Query:    3 ALSWGVFPNREVQQPTIFDPETYMVWKGEAFRLWVDLWASLYDDESKSAELLHDVHDSYYLVAVVDNNFVDGNLWEIFSHGTKPGASAE 269
            ALSWGVFPNREVQQPT+FDPETYMVWKGEAFRLWVDLWASLYDDESKSAELLHD+HDSYYLVAVVDNNF+DGNLWEIFS GT+PGASAE
Sbjct:  235 ALSWGVFPNREVQQPTVFDPETYMVWKGEAFRLWVDLWASLYDDESKSAELLHDIHDSYYLVAVVDNNFIDGNLWEIFSQGTQPGASAE 323
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BLAST of mRNA_E-fasciculatus_F_contig1023.219.1 vs. uniprot
Match: A0A6H5KKX8_9PHAE (Methylenetetrahydrofolate reductase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKX8_9PHAE)

HSP 1 Score: 173 bits (438), Expect = 2.610e-49
Identity = 77/82 (93.90%), Postives = 81/82 (98.78%), Query Frame = 3 
Query:    3 ALSWGVFPNREVQQPTIFDPETYMVWKGEAFRLWVDLWASLYDDESKSAELLHDVHDSYYLVAVVDNNFVDGNLWEIFSHGT 248
            ALSWGVFPNREVQQPT+FDPETYMVWKGEAFRLWVDLWASLYD+ESKSAELLHD+HDSYYLVAVVDNNF+DGNLWEIFS GT
Sbjct:  520 ALSWGVFPNREVQQPTVFDPETYMVWKGEAFRLWVDLWASLYDEESKSAELLHDIHDSYYLVAVVDNNFIDGNLWEIFSQGT 601
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BLAST of mRNA_E-fasciculatus_F_contig1023.219.1 vs. uniprot
Match: A0A8K1CJB9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CJB9_PYTOL)

HSP 1 Score: 124 bits (310), Expect = 3.510e-31
Identity = 49/78 (62.82%), Postives = 69/78 (88.46%), Query Frame = 3 
Query:    3 ALSWGVFPNREVQQPTIFDPETYMVWKGEAFRLWVDLWASLYDDESKSAELLHDVHDSYYLVAVVDNNFVDGNLWEIF 236
            A++WGVFPN+E+ QPTI D  +++ WK EAF LW+ LWASLYDD+S ++ELLH++HDSY+LV++VDN+FV+GN+W+IF
Sbjct:  503 AVTWGVFPNKEILQPTIVDSTSFVAWKDEAFSLWLKLWASLYDDDSTASELLHEIHDSYFLVSIVDNDFVNGNIWDIF 580
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BLAST of mRNA_E-fasciculatus_F_contig1023.219.1 vs. uniprot
Match: H3GAC2_PHYRM (Methylenetetrahydrofolate reductase n=22 Tax=Peronosporaceae TaxID=4777 RepID=H3GAC2_PHYRM)

HSP 1 Score: 123 bits (309), Expect = 4.930e-31
Identity = 50/84 (59.52%), Postives = 70/84 (83.33%), Query Frame = 3 
Query:    3 ALSWGVFPNREVQQPTIFDPETYMVWKGEAFRLWVDLWASLYDDESKSAELLHDVHDSYYLVAVVDNNFVDGNLWEIFSHGTKP 254
            A++WGVFPN+E+ QPTI D  +++VWK EAF LW+ LWASLY D S+SA+LLH+VHD+Y+LV++VDN+FV+GN+W++F     P
Sbjct:  504 AVTWGVFPNKEILQPTIVDSSSFLVWKDEAFALWLKLWASLYADGSQSAKLLHEVHDTYFLVSIVDNDFVNGNIWDLFEASVSP 587
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BLAST of mRNA_E-fasciculatus_F_contig1023.219.1 vs. uniprot
Match: A0A7S4DAI7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DAI7_HETAK)

HSP 1 Score: 119 bits (298), Expect = 6.400e-31
Identity = 48/83 (57.83%), Postives = 66/83 (79.52%), Query Frame = 3 
Query:    3 ALSWGVFPNREVQQPTIFDPETYMVWKGEAFRLWVDLWASLYDDESKSAELLHDVHDSYYLVAVVDNNFVDGNLWEIFSHGTK 251
            AL+WG FPNRE+ QPT+FDPE ++VWK EAF+LW+ LW +LYD++S SA+L+  +HD  +L AVVDN+FVDG+LW +F    +
Sbjct:  213 ALTWGSFPNREIVQPTVFDPEAFLVWKDEAFQLWLRLWGALYDEDSTSADLIQKLHDELWLTAVVDNDFVDGDLWAVFEEALR 295
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BLAST of mRNA_E-fasciculatus_F_contig1023.219.1 vs. uniprot
Match: A0A812SXV5_SYMMI (Methylenetetrahydrofolate reductase n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812SXV5_SYMMI)

HSP 1 Score: 122 bits (307), Expect = 6.530e-31
Identity = 49/83 (59.04%), Postives = 68/83 (81.93%), Query Frame = 3 
Query:    3 ALSWGVFPNREVQQPTIFDPETYMVWKGEAFRLWVDLWASLYDDESKSAELLHDVHDSYYLVAVVDNNFVDGNLWEIFSHGTK 251
            AL+WGVFP++E+ QPTIFDP T+ VW  EAF+LW++ WA LYDDE+ SA L+H+VHD+Y+LVA++DN F+D +++ IF H  K
Sbjct:  423 ALTWGVFPDKEILQPTIFDPNTFAVWSKEAFQLWIEAWAVLYDDETDSAALIHEVHDTYFLVAIIDNEFIDSDMYAIFKHVLK 505
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BLAST of mRNA_E-fasciculatus_F_contig1023.219.1 vs. uniprot
Match: K3WKM9_GLOUD (Methylenetetrahydrofolate reductase n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WKM9_GLOUD)

HSP 1 Score: 122 bits (305), Expect = 1.760e-30
Identity = 47/87 (54.02%), Postives = 71/87 (81.61%), Query Frame = 3 
Query:    3 ALSWGVFPNREVQQPTIFDPETYMVWKGEAFRLWVDLWASLYDDESKSAELLHDVHDSYYLVAVVDNNFVDGNLWEIFSHGTKPGAS 263
            A++WGVFPN+E+ QPTI D  ++M WK EAF LW+ LWASLYDDES ++E++H++HD+++LV++VDN+F++G++W IF     P A+
Sbjct:  503 AVTWGVFPNKEILQPTIVDSSSFMAWKDEAFALWLSLWASLYDDESAASEVIHEIHDTFFLVSIVDNDFINGDIWSIFDAQPSPNAA 589
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BLAST of mRNA_E-fasciculatus_F_contig1023.219.1 vs. uniprot
Match: A0A662WW66_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WW66_9STRA)

HSP 1 Score: 117 bits (293), Expect = 3.010e-30
Identity = 46/78 (58.97%), Postives = 68/78 (87.18%), Query Frame = 3 
Query:    3 ALSWGVFPNREVQQPTIFDPETYMVWKGEAFRLWVDLWASLYDDESKSAELLHDVHDSYYLVAVVDNNFVDGNLWEIF 236
            A++WGVFPN+E+ QPTI D  +++VWK EAF LW+ LWASLY++ S+SA LL ++HDSY+LV++VDN+FV+G++W++F
Sbjct:  208 AVTWGVFPNKEILQPTIVDSSSFLVWKDEAFALWLKLWASLYEEASQSARLLREIHDSYFLVSIVDNDFVNGSIWDLF 285
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1023.219.1 vs. uniprot
Match: A0A2D4BX93_PYTIN (Methylenetetrahydrofolate reductase (NAD(P)H) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BX93_PYTIN)

HSP 1 Score: 120 bits (302), Expect = 6.450e-30
Identity = 46/78 (58.97%), Postives = 68/78 (87.18%), Query Frame = 3 
Query:    3 ALSWGVFPNREVQQPTIFDPETYMVWKGEAFRLWVDLWASLYDDESKSAELLHDVHDSYYLVAVVDNNFVDGNLWEIF 236
            A++WGVFPN+EV QPTI D  +++ WK EAF LW+  WAS+YDD+S++AE++H++HD+Y+LV++VDN+F+ GN+WEIF
Sbjct:  479 AVTWGVFPNKEVLQPTIVDSNSFLAWKDEAFSLWLKEWASIYDDDSRAAEIIHEIHDTYFLVSIVDNDFIRGNIWEIF 556
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1023.219.1 vs. uniprot
Match: M4BR52_HYAAE (Methylenetetrahydrofolate reductase n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BR52_HYAAE)

HSP 1 Score: 119 bits (299), Expect = 7.380e-30
Identity = 47/84 (55.95%), Postives = 69/84 (82.14%), Query Frame = 3 
Query:    3 ALSWGVFPNREVQQPTIFDPETYMVWKGEAFRLWVDLWASLYDDESKSAELLHDVHDSYYLVAVVDNNFVDGNLWEIFSHGTKP 254
            A++WGVFPN+E+QQPTI D  +++VWK EAF LW+ LWASLY+  S S +LLH++HD+Y+LV+VVDN+F++G++W++F     P
Sbjct:  420 AVTWGVFPNKEIQQPTIVDSSSFLVWKDEAFALWLKLWASLYEPSSPSFKLLHEIHDTYFLVSVVDNDFMNGHIWDLFEASVSP 503
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1023.219.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LT25_ECTSI1.010e-5694.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KKX8_9PHAE2.610e-4993.90Methylenetetrahydrofolate reductase n=1 Tax=Ectoca... [more]
A0A8K1CJB9_PYTOL3.510e-3162.82Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
H3GAC2_PHYRM4.930e-3159.52Methylenetetrahydrofolate reductase n=22 Tax=Peron... [more]
A0A7S4DAI7_HETAK6.400e-3157.83Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A812SXV5_SYMMI6.530e-3159.04Methylenetetrahydrofolate reductase n=1 Tax=Symbio... [more]
K3WKM9_GLOUD1.760e-3054.02Methylenetetrahydrofolate reductase n=1 Tax=Globis... [more]
A0A662WW66_9STRA3.010e-3058.97Uncharacterized protein (Fragment) n=1 Tax=Nothoph... [more]
A0A2D4BX93_PYTIN6.450e-3058.97Methylenetetrahydrofolate reductase (NAD(P)H) n=1 ... [more]
M4BR52_HYAAE7.380e-3055.95Methylenetetrahydrofolate reductase n=1 Tax=Hyalop... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1023contigE-fasciculatus_F_contig1023:15973..17536 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size270
Cds size270
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1023.219.1prot_E-fasciculatus_F_contig1023.219.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1023 15973..17536 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927525.96856-CDS-E-fasciculatus_F_contig1023:15972..160461622927525.96856-CDS-E-fasciculatus_F_contig1023:15972..16046Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1023 15973..16046 +
1695995578.4853883-CDS-E-fasciculatus_F_contig1023:15972..160461695995578.4853883-CDS-E-fasciculatus_F_contig1023:15972..16046Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1023 15973..16046 +
1622927525.9894497-CDS-E-fasciculatus_F_contig1023:16675..168311622927525.9894497-CDS-E-fasciculatus_F_contig1023:16675..16831Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1023 16676..16831 +
1695995578.4954267-CDS-E-fasciculatus_F_contig1023:16675..168311695995578.4954267-CDS-E-fasciculatus_F_contig1023:16675..16831Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1023 16676..16831 +
1622927526.0156188-CDS-E-fasciculatus_F_contig1023:17496..175361622927526.0156188-CDS-E-fasciculatus_F_contig1023:17496..17536Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1023 17497..17536 +
1695995578.5078812-CDS-E-fasciculatus_F_contig1023:17496..175361695995578.5078812-CDS-E-fasciculatus_F_contig1023:17496..17536Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1023 17497..17536 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1023.219.1

>prot_E-fasciculatus_F_contig1023.219.1 ID=prot_E-fasciculatus_F_contig1023.219.1|Name=mRNA_E-fasciculatus_F_contig1023.219.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=90bp
RRCHGACSPTGRCSSRLSSTRKHTWCGRGRRSGCGWTCGRPSTTTSPRAR
SCCTTCTTRTTSWPWWTTTSSTATSGRFSPMVRSLVLQQR
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mRNA from alignment at E-fasciculatus_F_contig1023:15973..17536+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1023.219.1 ID=mRNA_E-fasciculatus_F_contig1023.219.1|Name=mRNA_E-fasciculatus_F_contig1023.219.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1564bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1023:15973..17536+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGGCGCTGTCATGGGGCGTGTTCCCCAACCGGGAGGTGCAGCAGCCGACT
ATCTTCGACCCGGAAACATACATGGTGAGAGGCCGGTTCTGGCTTGTGTG
GGTAGACTGATCTGGACGTGTGTGTTGTCGTTGTCGCGTGGATGTGTCAT
GGGTGAGCCACGCGTTGTTCGCGCTTTTTTAGCGTTTTGATGGCGCTTGG
TTGTCCTAGCGCTCGTGTGTTCTCTTTTCTGGCTAATGTCCTAATGTCCT
GTTCTGGTCGTTGACGTTATCGTCGGAATGTTTGTACTTTCACTTTCAGC
GTTGGCCTGCTGCTGCTGTGTGTGTGTGACGGATGGTGGTGTGTGAGTAA
GGGCAAGGCGTTCCGGCTGTGTGGGTGGCCCTGAACGGTTTGGTCGTGTA
CGAGTATGCGCGACGTGTTGCTAATTTGTTTTTCTGTTCCGCTTCTGGTG
GAGGTGGTGCCGGGCGGGTGTATCGCTCCAAGGCTCGGGCACCACCACCA
GCAGTATATGTGTACGGTCACCGTAACGTTAAAATTGCGCCCGCTGTTGG
GTGTGACTCTGTGTGTGATCCGGATGTTGTGTGTTGTCTTGTTGAGCACA
GACCGCGCTAACCGGCCGACCAATGAATGTACACCAGTCTTGTAGCGGGA
TAATGAAACACAAACACTCTTGTGGATGTGTGTTGGTGTGTGTCCTGCGC
CAGGTGTGGAAGGGGGAGGCGTTCCGGCTGTGGGTGGACCTGTGGGCGTC
CCTCTACGACGACGAGTCCAAGAGCGCGGAGCTGCTGCACGACGTGCACG
ACTCGTACTACCTCGTGGCCGTGGTGGACAACAACTTCGTCGACGGCAAC
CTCTGGGAGGTAAAAGATATTCCGCTGGCTGCTGCAGCAGCCGTGGGCCC
GGTTTTGGCGGGACCCCCTATGTAGTGTTAACGAAGGAGTCTGGTTGCTG
TTGAGGTCAGGTCGCTACTGCCCGTGTGGGCGGGCTGCGGAGGTGCCACG
CGATTTTGTGGTCGCAACTCGGGGCATGTCGCTAACCATGGGGTCACTAA
CCTACCCCCAACCCTGCTCCTGTTGAACTCCTTCCCAACAGTACGATCCT
GGTTGTGCTCGTATGTGGTTTGGTACACCCACGGTGCTCACGGGGCAACT
GTTGCAACCCCGCCAAAAAGAAAGTGTCGTTATTTTGTTTTTGCGCTTTT
CAGTTACCTTGTTGGTAATTCACACCCGAAATGGCGGCAGCTGCATAGGC
ATGAACTTAGAGACTCCATCGAGGGCACGGGTCGACCTCCGTATGAATCC
ACAATCTCACGTGCGGTTTTCGTGTCGTGTCCTCTTCGTGTCTGGATTTT
GAGCGGCAACGGTGATTCCCGGGCACGGAAGCGTGCAACTTGGGATGTTG
GTACGGGTGTCAACTCTGCTCTCTCGAATCATGATCCTTCGGCACCAAAT
CCTTCTCCGTCCTTCTCAATCCTCCGTTGCCTCGCTCCTTTCTGTCTTCA
CCCCCCCCCTCCTCGACTGTACAGATTTTCTCCCATGGTACGAAGCCTGG
TGCTTCAGCAGAGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1023:15973..17536+

>mRNA_E-fasciculatus_F_contig1023.219.1 ID=mRNA_E-fasciculatus_F_contig1023.219.1|Name=mRNA_E-fasciculatus_F_contig1023.219.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=540bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1023:15973..17536+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGGCGCTGTCATGGGGCGTGTTCCCCAACCGGGAGGTGCAGCAGCCGACT
ATCTTCGACCCGGAAACATACATGCGGCGCTGTCATGGGGCGTGTTCCCC
AACCGGGAGGTGCAGCAGCCGACTATCTTCGACCCGGAAACATACATGGT
GTGGAAGGGGGAGGCGTTCCGGCTGTGGGTGGACCTGTGGGCGTCCCTCT
ACGACGACGAGTCCAAGAGCGCGGAGCTGCTGCACGACGTGCACGACTCG
TACTACCTCGTGGCCGTGGTGGACAACAACTTCGTCGACGGCAACCTCTG
GGAGGTGTGGAAGGGGGAGGCGTTCCGGCTGTGGGTGGACCTGTGGGCGT
CCCTCTACGACGACGAGTCCAAGAGCGCGGAGCTGCTGCACGACGTGCAC
GACTCGTACTACCTCGTGGCCGTGGTGGACAACAACTTCGTCGACGGCAA
CCTCTGGGAGATTTTCTCCCATGGTACGAAGCCTGGTGCTTCAGCAGAGA
ATTTTCTCCCATGGTACGAAGCCTGGTGCTTCAGCAGAGA
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