mRNA_E-fasciculatus_F_contig10216.208.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig10216.208.1
Unique NamemRNA_E-fasciculatus_F_contig10216.208.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig10216.208.1 vs. uniprot
Match: D8LSU3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSU3_ECTSI)

HSP 1 Score: 174 bits (442), Expect = 3.500e-46
Identity = 95/116 (81.90%), Postives = 99/116 (85.34%), Query Frame = 2 
Query:  293 FDFVCSSSGTTAQEG---VGFDRVCALRGEVVHIFTFFHPDGGADEDGSSSSGEAGATAAG-TSSVSLELEHPAECAAWNSTASCVVVGDASGRLHFVTGEGTLIFSQPLLTSLVR 628
            FDFVCSSSGTTA+EG   VGFDRVCALRGEVVHIFTFFH   GA+E G SSSGE    AAG +SSVSLEL HPAEC AWNSTASCVVVGDASGRLHFVT EGTLIFSQPLLT+L R
Sbjct:   85 FDFVCSSSGTTAEEGGEGVGFDRVCALRGEVVHIFTFFHA--GAEEVGGSSSGEGATAAAGESSSVSLELGHPAECGAWNSTASCVVVGDASGRLHFVTAEGTLIFSQPLLTNLAR 198
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BLAST of mRNA_E-fasciculatus_F_contig10216.208.1 vs. uniprot
Match: A0A6H5KQ38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ38_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 9.500e-23
Identity = 57/64 (89.06%), Postives = 59/64 (92.19%), Query Frame = 2 
Query:  446 AGATAAG--TSSVSLELEHPAECAAWNSTASCVVVGDASGRLHFVTGEGTLIFSQPLLTSLVRG 631
            AGATAA   +SSVSLEL HPAECAAWNSTASCVVVGDASGRLHFVT EGTLIFSQPLLT+LVRG
Sbjct:   22 AGATAAAGKSSSVSLELGHPAECAAWNSTASCVVVGDASGRLHFVTPEGTLIFSQPLLTNLVRG 85
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BLAST of mRNA_E-fasciculatus_F_contig10216.208.1 vs. uniprot
Match: A0A835ZDW9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDW9_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 1.580e-9
Identity = 35/97 (36.08%), Postives = 57/97 (58.76%), Query Frame = 2 
Query:  323 TAQEGVGFDRVCALRGEVVHIFTFFHPDGGADEDGSSSSGEAGATAAGTSSVSLELEHPAECAAWNSTASCVVVGDASGRLHFVTGEGTLIFSQPLL 613
            + +E    +RVC L G   H+  F   +G   ++G+ +  +        +S +++L   AEC  W+STAS +V+GD +G+LHF   +GTL+FSQPL+
Sbjct:   65 SGEEQRSLERVCVLSGTTAHLLAFDDAEG---DNGTVADNQE------HTSTTVQLSAAAECGDWDSTASYLVIGDCTGKLHFYLADGTLLFSQPLI 152
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10216.208.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LSU3_ECTSI3.500e-4681.90Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KQ38_9PHAE9.500e-2389.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZDW9_9STRA1.580e-936.08Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10216contigE-fasciculatus_F_contig10216:1202..3856 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size741
Cds size738
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10216.208.1prot_E-fasciculatus_F_contig10216.208.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig10216 1202..3854 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927524.8398411-CDS-E-fasciculatus_F_contig10216:1201..13531622927524.8398411-CDS-E-fasciculatus_F_contig10216:1201..1353Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10216 1202..1353 +
1695995577.9909394-CDS-E-fasciculatus_F_contig10216:1201..13531695995577.9909394-CDS-E-fasciculatus_F_contig10216:1201..1353Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10216 1202..1353 +
1622927524.856818-CDS-E-fasciculatus_F_contig10216:2224..23621622927524.856818-CDS-E-fasciculatus_F_contig10216:2224..2362Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10216 2225..2362 +
1695995578.0025427-CDS-E-fasciculatus_F_contig10216:2224..23621695995578.0025427-CDS-E-fasciculatus_F_contig10216:2224..2362Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10216 2225..2362 +
1622927524.870848-CDS-E-fasciculatus_F_contig10216:2382..25381622927524.870848-CDS-E-fasciculatus_F_contig10216:2382..2538Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10216 2383..2538 +
1695995578.0214212-CDS-E-fasciculatus_F_contig10216:2382..25381695995578.0214212-CDS-E-fasciculatus_F_contig10216:2382..2538Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10216 2383..2538 +
1622927524.888132-CDS-E-fasciculatus_F_contig10216:2858..30521622927524.888132-CDS-E-fasciculatus_F_contig10216:2858..3052Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10216 2859..3052 +
1695995578.0343397-CDS-E-fasciculatus_F_contig10216:2858..30521695995578.0343397-CDS-E-fasciculatus_F_contig10216:2858..3052Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10216 2859..3052 +
1622927524.9025486-CDS-E-fasciculatus_F_contig10216:3756..38541622927524.9025486-CDS-E-fasciculatus_F_contig10216:3756..3854Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10216 3757..3854 +
1695995578.0464165-CDS-E-fasciculatus_F_contig10216:3756..38541695995578.0464165-CDS-E-fasciculatus_F_contig10216:3756..3854Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10216 3757..3854 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig10216.208.1

>prot_E-fasciculatus_F_contig10216.208.1 ID=prot_E-fasciculatus_F_contig10216.208.1|Name=mRNA_E-fasciculatus_F_contig10216.208.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=246bp
REGAVRGRRSSEQPSTMAHEGLWPREYNRTGEAGVRTLAAADDDGVHVLP
RKSGRGGEAPAAGGGGNGSYHLGLLLETPMDKDDSDDTQQQGRRRRDVRL
RLLQQRHNGAGGGRVRPRLRPSRRGGPHLHLLSPRWRGRRGRQQQQRGGR
RYGRRHVVRLSGARAPGGVRGVELYGVLRGGWRRVGKTSFRHRRGHAHLL
PAAPDQPGSREQVTTTSPGVRRQSNPLALSVASSSQRLPIPGDRGR
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mRNA from alignment at E-fasciculatus_F_contig10216:1202..3856+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig10216.208.1 ID=mRNA_E-fasciculatus_F_contig10216.208.1|Name=mRNA_E-fasciculatus_F_contig10216.208.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2655bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10216:1202..3856+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGGGAAGGAGCAGTGAGAGGGAGGCGTAGTAGCGAGCAACCATCCACCAT
GGCCCACGAAGGGCTTTGGCCACGAGAATACAATCGTACCGGTGAAGCAG
GCGTACGGACACTTGCAGCAGCAGATGATGATGGTGTACATGTACTGCCG
AGGTGAGGGTGTTGCGATCCAGCATCAGCAGCAAGGGCTGGTCTGGCGTG
TGTACCTTGCTATCAAGGCGCGACGTTGACGCCGCTCCGAGGGGACTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCACGCGTTCGTCAACGAAAAATG
CACGACAGGGTGGTCGTGCTGAGGTGTGTGGGCTTGGTCGTCGTGCTGGG
AGTCTCAGTACAGCAGTAGACAAGCATTGTGTCTAATTGGTGAAAGGAGG
GTTGCCTGCAGGAGGAGCCGCATAATGCCCAACCGTCGACTCTTGGCACC
TTGCCAAGCACGCGAACGTCAAGCCAGCAGCAACCACATTGCAATATGCC
TATGCAGTACTCTCGGCTTGTCCACAAATAATATATCGCGCTACCAGCCA
GTGTCCATGTACTTTTAAGGTTCGCGATATCTGGTTTGAGTGAGGACCGA
CAACAGAACAAAACCGTTTGATTTGAAATGTGCCCAAACGCCCACTTCTG
CATGTAGGTCTTGCATGCTTGAGCGACCGCACCGGGGCGTTAGGTTAGAA
GCGACAGCTCACAGAGCACTGGCAACCTGTGCGGCGCCTTTCTCAGGCAG
TTCGTGTGTTCGCAAGCCCATCGCAGCCGAAACCAAAAGCACTTCACGTA
CTCTCAAGACGTGATTGGACATGAAATATCCATTCCTGAAATCTGAATGA
GAAAAAAAAAAGAACGCAGAGTTCTGCCATTTGCCAAATTCCGCAAATTC
CACCACAGCAGATACTGCTTGTAGCACCGCCGTTGCTTTAACTCCGTCCT
ATGAAATGCACCGCTTCCGATGCACCGCTCCCTTCCACCTTCCACCTTCC
ACCCCACTTTTCCGTCTCACCAGAAAATCGGGCCGCGGGGGAGAGGCGCC
AGCGGCGGGCGGCGGCGGCAACGGTAGCTACCACCTGGGCCTCCTGTTGG
AGACCCCAATGGACAAGGACGACAGCGACGACACCCAGCAGCAGGGCAGA
AGAAGAAGAGAGCACTGCTCCTCGTCGTCAGCGTTCGACTTCGTCTGCTC
CAGCAGCGGCACAACGGCGCAGGAGGGGGTCGGGTTCGACCGCGTTTGCG
CCCTTCGCGGCGAGGTGGTCCACATCTTCACCTTCTTTCACCCCGATGGC
GGGGCCGACGAGGACGGCAGCAGCAGCAGCGGGGAGGGTGAGGGCCGTTT
TATGTAGCACTTATGCATATTCTTCTCCCAAAAATTACCAAATCCGTAGA
CCATGAAACCTCGATTTGCGGCCTAGTTTTTTTTTTTTTGAGATCTGGAA
ATGACTGACGAGACCGGCAATGTAGGAAAGCTTGGAAGCATACAGAGCTG
ATATACCAAACGACCCTGAGCAGTTGCGGGAAGAAAGATTGAGATTCCTA
CGATGTCCCGAACACGCACGCACGCTCGGACCGAAGACCGCCACAAGCGC
CGGTGTGGCTGTTGTCATGGTCTTCACATTTACAACCCGTTTCGCCCACC
TCCGCAGCAGGCGCTACGGCCGCAGGCACGTCGTCCGTCTCTCTGGAGCT
CGAGCACCCGGCGGAGTGCGCGGCGTGGAACTCTACGGCGTCTTGCGTGG
TGGTTGGCGACGCGTCGGGAAGACTTCATTTCGTCACCGGAGAGGGCACG
CTCATCTTCTCCCAGCCGCTCCTGACCAGCCTGGTTCGAGGGAGCAGGTG
AGCTGGGCGGGGAATCCACGCTTGTTTGCTTTCGATTGATTTAGCATGAT
TATGTCCAACAGCGGCAGCGGCAATAGCAGTAAGCAGTTGTTTTTTTTGG
CGATTTGACACGACGTGGAGTGGACACTATGCAACAACAGTGGCAGTAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGTGAGCTGGCAG
TCGCTTCAGCACGTTGTGGGCACTGCAATAGCAGCAGTAGCAGCAGTAGG
CGAACACGCGGTCCGGTGTAGTCGTCAATTCTGGCAGGAGGTGAACAGCC
GACGGATAGAGTGTCTAGTCATGGAGTCAACATGCGGGTTCGTTTAGCGG
CTGCGGCGGGACTTGCACAGGCGGACCGCCGAAGGCTCCACTTATGTCAC
CAGTCCTGCAGACGTCGTTTGATCAGGGTGCTTTTACTCCTATAATATTC
GCCAGCCCCGGTTGCATACCCACCATGCTACAGGTCAGAGCTGACTTGCT
GCTGACTTGTAGCATGGTGGATATGCTGTACATCTACCAACGTCCACCGC
ACCGCGCACGTGCAACACGTAGCCGCGACAGCATCCTTACCTGACCCCCT
TAACTACTCCAATCGAGCACCTCAACAAGCTCCTTTTCGCGGTGCCGGTC
ACCACAAGCACTGACCCCGTCAACGCACCCCTCCACCTGGGTCTCTTCTC
TTCAGCGACGACGAGTCCGGGGGTAAGACGACAGTCAAATCCCCTCGCGC
TTTCAGTTGCATCAAGTTCGCAACGTCTACCGATACCCGGGGATCGGGGG
CGGCG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10216:1202..3856+

>mRNA_E-fasciculatus_F_contig10216.208.1 ID=mRNA_E-fasciculatus_F_contig10216.208.1|Name=mRNA_E-fasciculatus_F_contig10216.208.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1476bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10216:1202..3856+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGGGAAGGAGCAGTGAGAGGGAGGCGTAGTAGCGAGCAACCATCCACCAT
GGCCCACGAAGGGCTTTGGCCACGAGAATACAATCGTACCGGTGAAGCAG
GCGTACGGACACTTGCAGCAGCAGATGATGATGGTGTACATGTACTGCCG
AGAGGGAAGGAGCAGTGAGAGGGAGGCGTAGTAGCGAGCAACCATCCACC
ATGGCCCACGAAGGGCTTTGGCCACGAGAATACAATCGTACCGGTGAAGC
AGGCGTACGGACACTTGCAGCAGCAGATGATGATGGTGTACATGTACTGC
CGAGAAAATCGGGCCGCGGGGGAGAGGCGCCAGCGGCGGGCGGCGGCGGC
AACGGTAGCTACCACCTGGGCCTCCTGTTGGAGACCCCAATGGACAAGGA
CGACAGCGACGACACCCAGCAGCAGGGCAGAAGAAGAAGAGAAAAATCGG
GCCGCGGGGGAGAGGCGCCAGCGGCGGGCGGCGGCGGCAACGGTAGCTAC
CACCTGGGCCTCCTGTTGGAGACCCCAATGGACAAGGACGACAGCGACGA
CACCCAGCAGCAGGGCAGAAGAAGAAGAGACGTTCGACTTCGTCTGCTCC
AGCAGCGGCACAACGGCGCAGGAGGGGGTCGGGTTCGACCGCGTTTGCGC
CCTTCGCGGCGAGGTGGTCCACATCTTCACCTTCTTTCACCCCGATGGCG
GGGCCGACGAGGACGGCAGCAGCAGCAGCGGGGAGGCGTTCGACTTCGTC
TGCTCCAGCAGCGGCACAACGGCGCAGGAGGGGGTCGGGTTCGACCGCGT
TTGCGCCCTTCGCGGCGAGGTGGTCCACATCTTCACCTTCTTTCACCCCG
ATGGCGGGGCCGACGAGGACGGCAGCAGCAGCAGCGGGGAGGCAGGCGCT
ACGGCCGCAGGCACGTCGTCCGTCTCTCTGGAGCTCGAGCACCCGGCGGA
GTGCGCGGCGTGGAACTCTACGGCGTCTTGCGTGGTGGTTGGCGACGCGT
CGGGAAGACTTCATTTCGTCACCGGAGAGGGCACGCTCATCTTCTCCCAG
CCGCTCCTGACCAGCCTGGTTCGAGGGAGCAGGTGACAGGCGCTACGGCC
GCAGGCACGTCGTCCGTCTCTCTGGAGCTCGAGCACCCGGCGGAGTGCGC
GGCGTGGAACTCTACGGCGTCTTGCGTGGTGGTTGGCGACGCGTCGGGAA
GACTTCATTTCGTCACCGGAGAGGGCACGCTCATCTTCTCCCAGCCGCTC
CTGACCAGCCTGGTTCGAGGGAGCAGGTGACGACGACGAGTCCGGGGGTA
AGACGACAGTCAAATCCCCTCGCGCTTTCAGTTGCATCAAGTTCGCAACG
TCTACCGATACCCGGGGATCGGGGGCGGCGACGACGAGTCCGGGGGTAAG
ACGACAGTCAAATCCCCTCGCGCTTTCAGTTGCATCAAGTTCGCAACGTC
TACCGATACCCGGGGATCGGGGGCGG
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