mRNA_E-fasciculatus_F_contig10213.204.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig10213.204.1
Unique NamemRNA_E-fasciculatus_F_contig10213.204.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig10213.204.1 vs. uniprot
Match: D7G846_ECTSI (DNA polymerase zeta catalytic subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G846_ECTSI)

HSP 1 Score: 148 bits (373), Expect = 1.500e-38
Identity = 112/144 (77.78%), Postives = 117/144 (81.25%), Query Frame = 1 
Query:    4 PREGGSGDARRLNSPVASTPEALSTNTPPLRTPGSVPSGHVAEPRRSDHITPESRVRPAKQSTQGPHRPTTKSQISPATLTPSSCLSEEEEGGRFAFXXXXXXXXXXXXXXXXXXXXXXXXXXXGA---GSQTSGIGLSGGILG 426
            P + GSGDARRL S V+STPEAL       RTP SVPSG   EPR+SDHITPE RVRPAKQSTQGPHRPTTKSQISPATLTPSSCLSEEE+GGRFAF XXXXXXXXXXXXXXXXXXXXX      +   GSQ SGIGLSGGILG
Sbjct: 1892 PGDVGSGDARRLKSLVSSTPEAL-------RTPESVPSGDAVEPRQSDHITPECRVRPAKQSTQGPHRPTTKSQISPATLTPSSCLSEEEKGGRFAFGXXXXXXXXXXXXXXXXXXXXXTTAEAASPAIGSQASGIGLSGGILG 2028
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BLAST of mRNA_E-fasciculatus_F_contig10213.204.1 vs. uniprot
Match: A0A6H5L0N9_9PHAE (DNA polymerase zeta catalytic subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0N9_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 3.610e-12
Identity = 76/106 (71.70%), Postives = 80/106 (75.47%), Query Frame = 1 
Query:  115 SGHVAE-PRRSDHITPESRVRPAKQSTQGPHRPTTKSQISPATLTPSSCLSEEEEGGRFAFXXXXXXXXXXXXXXXXXXXXXXXXXXXGA-GSQTSGIGLSGGILG 426
            S HV + P R+  + P     P K    GPH PTTKSQISPATLTPSSCLSE+EEG RFAF XXXXXXXXXXXXXXXXXXXXXXX    A GSQ SGIGLSGGILG
Sbjct: 1822 SRHVNQGPGRTVELVPAISPPPYK----GPHLPTTKSQISPATLTPSSCLSEDEEGRRFAFGXXXXXXXXXXXXXXXXXXXXXXXAASPAVGSQASGIGLSGGILG 1923
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10213.204.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G846_ECTSI1.500e-3877.78DNA polymerase zeta catalytic subunit n=1 Tax=Ecto... [more]
A0A6H5L0N9_9PHAE3.610e-1271.70DNA polymerase zeta catalytic subunit n=1 Tax=Ecto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10213contigE-fasciculatus_F_contig10213:3008..4693 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score151.8
Seed ortholog evalue2.5e-34
Seed eggNOG ortholog2880.D7G846
Preferred nameAHDC1
KEGG koko:K02350
KEGG Pathwayko01100,ko01524,ko03460,map01100,map01524,map03460
KEGG ModuleM00293
GOsGO:0000002,GO:0000228,GO:0000731,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0003887,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005694,GO:0005737,GO:0005739,GO:0006139,GO:0006259,GO:0006281,GO:0006301,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007005,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016035,GO:0016043,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0019985,GO:0031974,GO:0031981,GO:0032042,GO:0032991,GO:0033554,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0042276,GO:0042575,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043504,GO:0043596,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0061695,GO:0070013,GO:0070987,GO:0071704,GO:0071840,GO:0071897,GO:0090304,GO:0097159,GO:0140097,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902494,GO:1990234
EggNOG free text desc.DNA polymerase activity
EggNOG OGsCOG0417@1,KOG0968@2759
EC2.7.7.7
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03400
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDNA polymerase
Ec32 orthologEc-12_001530.1
Exons3
Model size428
Cds size426
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10213.204.1prot_E-fasciculatus_F_contig10213.204.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig10213 3008..4693 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927524.5975611-CDS-E-fasciculatus_F_contig10213:3007..32501622927524.5975611-CDS-E-fasciculatus_F_contig10213:3007..3250Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10213 3008..3250 -
1695995577.8887908-CDS-E-fasciculatus_F_contig10213:3007..32501695995577.8887908-CDS-E-fasciculatus_F_contig10213:3007..3250Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10213 3008..3250 -
1622927524.6143157-CDS-E-fasciculatus_F_contig10213:3833..39091622927524.6143157-CDS-E-fasciculatus_F_contig10213:3833..3909Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10213 3834..3909 -
1695995577.8988593-CDS-E-fasciculatus_F_contig10213:3833..39091695995577.8988593-CDS-E-fasciculatus_F_contig10213:3833..3909Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10213 3834..3909 -
1622927524.6293583-CDS-E-fasciculatus_F_contig10213:4586..46931622927524.6293583-CDS-E-fasciculatus_F_contig10213:4586..4693Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10213 4587..4693 -
1695995577.906963-CDS-E-fasciculatus_F_contig10213:4586..46931695995577.906963-CDS-E-fasciculatus_F_contig10213:4586..4693Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10213 4587..4693 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig10213.204.1

>prot_E-fasciculatus_F_contig10213.204.1 ID=prot_E-fasciculatus_F_contig10213.204.1|Name=mRNA_E-fasciculatus_F_contig10213.204.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=142bp
VPREGGSGDARRLNSPVASTPEALSTNTPPLRTPGSVPSGHVAEPRRSDH
ITPESRVRPAKQSTQGPHRPTTKSQISPATLTPSSCLSEEEEGGRFAFGL
GAAAAAAGRGPAPAAAAAAAEAASPGAGSQTSGIGLSGGILG
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mRNA from alignment at E-fasciculatus_F_contig10213:3008..4693-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig10213.204.1 ID=mRNA_E-fasciculatus_F_contig10213.204.1|Name=mRNA_E-fasciculatus_F_contig10213.204.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1686bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10213:3008..4693- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTCCCAAGAGAGGGAGGAAGCGGCGACGCGCGACGACTAAACTCCCCTGT
CGCCTCAACCCCGGAGGCTCTCTCGACGAACACGCCTCCCCTGCGAACTC
CTGGAAGGTGGGGATAACTTGAGTGCCACTTTTGATCTCGGTGGGAGTGG
CGTGTGTGGACTCATAGGGGGTCACCCTTTGTAGCTGGAGGTCGCGCTGT
TGTTGCCAGCCGATGTTTGGAGTCACCTTCGTGGGATGGAGGGGAGGGCG
GGAGGACGAGGTTTGCGGAACGGGTGTGACTCGACCCAAGGTAAAAGATC
GGCAAGATGTGCGCAATAATTTTGTCCGTTGCGTCCCCATCATGTCGAAT
GTTTTGTCTGGTTTAAGAGCAACGGGTGATGTTAGAACGGGCTTTTGTGC
AGGTTATACCTATGGTGGACAATGCTTCGTCATGTAACACCTTCAGGTGG
ATATTGACTCAGAGCGACCGTGTTCATTCGGAACGCAGCGCGAAAAGCCT
GCAATGTTTTCACTTTTGCTCTACCTTGCAAGGCTGTTGAAGGCGAAGTG
AGTTCTCTCTGATCCCTCAGCTTATGTCAATATTTAAATTTCCACCACAT
CAAATGTTATTGTGCCTCCTCCCCCCACCCTCCCCGTTCTCTGCAAGTTG
TACAGTACGAAACACAGTGACGCGTTTCACTCGAAGCAACGGGTATGCCA
AACGGAAGCATATAGATTGTCCTCATGAGGCATTGCCATGTGTTGTCGTC
TTACGCCCCCCTTCCTCCTTGACGGACGACACAGCGTGCCGTCCGGGCAC
GTGGCAGAGCCACGCCGGAGCGACCATATAACCCCGGAGTCTCGAGTCCG
ACCTGCCAAGGTGTGAAGCACACCAAACTGAACGGTTTTTTCTCCCGCGA
TTAAGTCCAAAAGCTTTTCAGTACGTAGATCCTTTTTTTTTTAAGCAATA
AGGAGACGGCTGTTGGGAAGTCATCTCTGCGTGTCCAGAACGACGTGAGT
ACAAATTTGCGAGACTTCCTTACCTCTCGTTAGGGTTCGTCACTGCCTGT
TAGTTCGAGTCGCGGCCCGAGAATTCTCCCGAGGACGAAGGGAACTCCAT
GTGCACAAGCAGAGATACCCGACCAGCCTGTAGTTCAATTTATTGCGTGT
GTTCACCCCCCCTACCCCAGCGATATCGGCTGGTGGTGTCTGGCCAGTCA
CTTACTCATCAACGGTCTCTTCTAGAGAGGACTGCAGGTACAAGTTGACA
CGCGAAATATGGGTCGCAATATGTAATCGAATGCCGAATCCACAAGCACT
TTCTCGTAACCTTGCTCCTCCCTTGCTTAAGCCCCGCTAGACCACGTCCA
AGCAGCACAAGATTAACCATGCACACCTACCCGTTCACGTCGCCTTTCCC
CCTCCTCGGCTTCCCCCTCTTCCTTTCCCTCCACAATCCCCAGCAATCCA
CCCAGGGACCCCACCGCCCCACCACCAAGAGCCAGATTTCGCCCGCCACG
CTGACACCGTCGTCCTGTCTCTCGGAGGAGGAGGAGGGCGGAAGGTTCGC
GTTCGGCCTTGGCGCAGCAGCAGCTGCCGCGGGCCGTGGGCCGGCACCCG
CCGCCGCCGCCGCCGCCGCTGAGGCAGCCTCCCCGGGGGCCGGGAGCCAG
ACGAGCGGCATCGGCCTAAGCGGCGGAATACTGGGG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10213:3008..4693-

>mRNA_E-fasciculatus_F_contig10213.204.1 ID=mRNA_E-fasciculatus_F_contig10213.204.1|Name=mRNA_E-fasciculatus_F_contig10213.204.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=852bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10213:3008..4693- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTCCCAAGAGAGGGAGGAAGCGGCGACGCGCGACGACTAAACTCCCCTGT
CGCCTCAACCCCGGAGGCTCTCTCGACGAACACGCCTCCCCTGCGAACTC
CTGGAAGGTCCCAAGAGAGGGAGGAAGCGGCGACGCGCGACGACTAAACT
CCCCTGTCGCCTCAACCCCGGAGGCTCTCTCGACGAACACGCCTCCCCTG
CGAACTCCTGGAAGCGTGCCGTCCGGGCACGTGGCAGAGCCACGCCGGAG
CGACCATATAACCCCGGAGTCTCGAGTCCGACCTGCCAAGCGTGCCGTCC
GGGCACGTGGCAGAGCCACGCCGGAGCGACCATATAACCCCGGAGTCTCG
AGTCCGACCTGCCAAGCAATCCACCCAGGGACCCCACCGCCCCACCACCA
AGAGCCAGATTTCGCCCGCCACGCTGACACCGTCGTCCTGTCTCTCGGAG
GAGGAGGAGGGCGGAAGGTTCGCGTTCGGCCTTGGCGCAGCAGCAGCTGC
CGCGGGCCGTGGGCCGGCACCCGCCGCCGCCGCCGCCGCCGCTGAGGCAG
CCTCCCCGGGGGCCGGGAGCCAGACGAGCGGCATCGGCCTAAGCGGCGGA
ATACTGGGGCAATCCACCCAGGGACCCCACCGCCCCACCACCAAGAGCCA
GATTTCGCCCGCCACGCTGACACCGTCGTCCTGTCTCTCGGAGGAGGAGG
AGGGCGGAAGGTTCGCGTTCGGCCTTGGCGCAGCAGCAGCTGCCGCGGGC
CGTGGGCCGGCACCCGCCGCCGCCGCCGCCGCCGCTGAGGCAGCCTCCCC
GGGGGCCGGGAGCCAGACGAGCGGCATCGGCCTAAGCGGCGGAATACTGG
GG
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