mRNA_E-fasciculatus_F_contig10203.196.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig10203.196.1 vs. uniprot
Match: A0A6H5KY83_9PHAE (Methionine aminopeptidase 2 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY83_9PHAE) HSP 1 Score: 241 bits (616), Expect = 9.050e-77 Identity = 115/121 (95.04%), Postives = 116/121 (95.87%), Query Frame = 1 Query: 1 MAVRREQDLECSHYMKDINAPRVPLRLPKARQLLSHINKTFGTLAFCRRWLERPDGGSTTINGVSGKQEKYVGALKQLCDSGLVNAYPPLCDVRGSYVAQYEHTILMRPTCVEVLSRGDDF 363
MAV EQDLECSHYM DINAPRVPLRLPKARQLLSHINKTFGTLAFCRRWLERPDGGS TINGVSGKQEKYVGALKQLCDSGLV+A PPLCDVRGSYVAQYEHTILMRPTCVEVLSRGDDF
Sbjct: 299 MAVHLEQDLECSHYMNDINAPRVPLRLPKARQLLSHINKTFGTLAFCRRWLERPDGGSATINGVSGKQEKYVGALKQLCDSGLVSALPPLCDVRGSYVAQYEHTILMRPTCVEVLSRGDDF 419
BLAST of mRNA_E-fasciculatus_F_contig10203.196.1 vs. uniprot
Match: D8LB38_ECTSI (Methionine aminopeptidase 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB38_ECTSI) HSP 1 Score: 241 bits (616), Expect = 2.080e-75 Identity = 113/115 (98.26%), Postives = 114/115 (99.13%), Query Frame = 1 Query: 19 QDLECSHYMKDINAPRVPLRLPKARQLLSHINKTFGTLAFCRRWLERPDGGSTTINGVSGKQEKYVGALKQLCDSGLVNAYPPLCDVRGSYVAQYEHTILMRPTCVEVLSRGDDF 363
+DLECSHYMKD NAPRVPLRLPKARQLLSHINKTFGTLAFCRRWLERPDGGSTTINGVSGKQEKYVGALKQLCDSGLVNAYPPLCDVRGSYVAQYEHTILMRPTCVEVLSRGDDF
Sbjct: 428 EDLECSHYMKDFNAPRVPLRLPKARQLLSHINKTFGTLAFCRRWLERPDGGSTTINGVSGKQEKYVGALKQLCDSGLVNAYPPLCDVRGSYVAQYEHTILMRPTCVEVLSRGDDF 542
BLAST of mRNA_E-fasciculatus_F_contig10203.196.1 vs. uniprot
Match: D8LB39_ECTSI (Methionine aminopeptidase 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB39_ECTSI) HSP 1 Score: 236 bits (602), Expect = 1.720e-73 Identity = 111/115 (96.52%), Postives = 113/115 (98.26%), Query Frame = 1 Query: 19 QDLECSHYMKDINAPRVPLRLPKARQLLSHINKTFGTLAFCRRWLERPDGGSTTINGVSGKQEKYVGALKQLCDSGLVNAYPPLCDVRGSYVAQYEHTILMRPTCVEVLSRGDDF 363
+DLECSHYMKDINAPRVPLRLPKARQLLSHI+KTFGTLAFCRRWLERPDGGS TINGVSGKQEKYVGALKQLCDSGLVNA PPLCDVRGSYVAQYEHTILMRPTCVEVLSRGDDF
Sbjct: 411 EDLECSHYMKDINAPRVPLRLPKARQLLSHISKTFGTLAFCRRWLERPDGGSATINGVSGKQEKYVGALKQLCDSGLVNALPPLCDVRGSYVAQYEHTILMRPTCVEVLSRGDDF 525
BLAST of mRNA_E-fasciculatus_F_contig10203.196.1 vs. uniprot
Match: A0A7S2KSM3_9STRA (Methionine aminopeptidase n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KSM3_9STRA) HSP 1 Score: 200 bits (508), Expect = 2.100e-62 Identity = 88/115 (76.52%), Postives = 102/115 (88.70%), Query Frame = 1 Query: 19 QDLECSHYMKDINAPRVPLRLPKARQLLSHINKTFGTLAFCRRWLERPDGGSTTINGVSGKQEKYVGALKQLCDSGLVNAYPPLCDVRGSYVAQYEHTILMRPTCVEVLSRGDDF 363
+DLECSHYMK+ NAP VPLRLP++++LL HINKTFGTLAFCRRWLER DGGS T+NG GKQEKY+GALK LCD G+V AYPPL DV+GSY AQYEHT+++RPTC E+LSRGDDF
Sbjct: 149 EDLECSHYMKNFNAPHVPLRLPRSKKLLGHINKTFGTLAFCRRWLEREDGGSFTVNGNKGKQEKYMGALKNLCDVGIVQAYPPLVDVKGSYTAQYEHTLVLRPTCKEILSRGDDF 263
BLAST of mRNA_E-fasciculatus_F_contig10203.196.1 vs. uniprot
Match: A0A7S1E596_9STRA (Hypothetical protein n=2 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1E596_9STRA) HSP 1 Score: 194 bits (492), Expect = 6.110e-62 Identity = 85/115 (73.91%), Postives = 100/115 (86.96%), Query Frame = 1 Query: 19 QDLECSHYMKDINAPRVPLRLPKARQLLSHINKTFGTLAFCRRWLERPDGGSTTINGVSGKQEKYVGALKQLCDSGLVNAYPPLCDVRGSYVAQYEHTILMRPTCVEVLSRGDDF 363
+D+ECSHYMK+ +AP VPLR+ +++LLSHINKTFGTLAFCRRWLER DGGS TING GKQEKY+GALK LCD G+V AYPPLCD +G Y AQYEHTI+M+PTC EV+SRGDD+
Sbjct: 6 EDMECSHYMKNFHAPHVPLRMQSSKKLLSHINKTFGTLAFCRRWLEREDGGSQTINGDRGKQEKYMGALKNLCDVGIVQAYPPLCDAKGCYTAQYEHTIVMKPTCKEVVSRGDDY 120
BLAST of mRNA_E-fasciculatus_F_contig10203.196.1 vs. uniprot
Match: A0A7S0C7U4_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C7U4_9STRA) HSP 1 Score: 197 bits (500), Expect = 9.770e-62 Identity = 84/117 (71.79%), Postives = 106/117 (90.60%), Query Frame = 1 Query: 19 QDLECSHYMKDINAPRVPLRLPKARQLLSHINKTFGTLAFCRRWLERPDGGSTTINGVSGK--QEKYVGALKQLCDSGLVNAYPPLCDVRGSYVAQYEHTILMRPTCVEVLSRGDDF 363
+D+ECSHYMK+ +AP +PLRLP+A+++L+HINKTFGTLAFCRRWLER DGGS+T+NG+SGK QEKY+GALK LCD G++ YPPLCD++GSY AQYEHT+L+RPTC EV+SRGDD+
Sbjct: 106 EDMECSHYMKNFHAPHIPLRLPRAKKVLAHINKTFGTLAFCRRWLEREDGGSSTVNGMSGKGKQEKYMGALKNLCDVGIIQPYPPLCDIKGSYTAQYEHTLLLRPTCKEVVSRGDDY 222
BLAST of mRNA_E-fasciculatus_F_contig10203.196.1 vs. uniprot
Match: A0A835Z307_9STRA (Methionine aminopeptidase 2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z307_9STRA) HSP 1 Score: 205 bits (521), Expect = 1.150e-61 Identity = 92/116 (79.31%), Postives = 106/116 (91.38%), Query Frame = 1 Query: 19 QDLECSHYMKDINAPRVPLRLPKARQLLSHINKTFGTLAFCRRWLERPDGGSTTINGVSGKQE-KYVGALKQLCDSGLVNAYPPLCDVRGSYVAQYEHTILMRPTCVEVLSRGDDF 363
+DLECSHYM+D + VPLRLP+A+QLLSHINKTFGTLAFCRRWL+RPDGGST +NG +G Q+ KY+GALKQLCDSG+VNAYPPLCD++GSYVAQYEHT L+RPTC EVLSRGDDF
Sbjct: 386 KDLECSHYMRDFDVQHVPLRLPRAKQLLSHINKTFGTLAFCRRWLDRPDGGSTFVNGATGGQQVKYLGALKQLCDSGVVNAYPPLCDIKGSYVAQYEHTFLLRPTCKEVLSRGDDF 501
BLAST of mRNA_E-fasciculatus_F_contig10203.196.1 vs. uniprot
Match: A0A2R5GYH0_9STRA (Methionine aminopeptidase 2 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GYH0_9STRA) HSP 1 Score: 194 bits (494), Expect = 2.320e-61 Identity = 85/115 (73.91%), Postives = 102/115 (88.70%), Query Frame = 1 Query: 19 QDLECSHYMKDINAPRVPLRLPKARQLLSHINKTFGTLAFCRRWLERPDGGSTTINGVSGKQEKYVGALKQLCDSGLVNAYPPLCDVRGSYVAQYEHTILMRPTCVEVLSRGDDF 363
+DLECSHYM+ +AP VPLR+P +++LL+HIN+TFGTL FCRRWLER DGGSTTING SGKQ +Y+GALK LCD G+++ YPPLCDV+GSYVAQYEHTIL+RPT EVLSRGDD+
Sbjct: 69 EDLECSHYMRRFDAPHVPLRMPASKRLLAHINRTFGTLPFCRRWLEREDGGSTTINGTSGKQTRYLGALKNLCDVGIIDMYPPLCDVKGSYVAQYEHTILLRPTAKEVLSRGDDY 183
BLAST of mRNA_E-fasciculatus_F_contig10203.196.1 vs. uniprot
Match: A0A7R9ZTZ3_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia arenysensis TaxID=697910 RepID=A0A7R9ZTZ3_9STRA) HSP 1 Score: 194 bits (494), Expect = 2.470e-61 Identity = 84/115 (73.04%), Postives = 101/115 (87.83%), Query Frame = 1 Query: 19 QDLECSHYMKDINAPRVPLRLPKARQLLSHINKTFGTLAFCRRWLERPDGGSTTINGVSGKQEKYVGALKQLCDSGLVNAYPPLCDVRGSYVAQYEHTILMRPTCVEVLSRGDDF 363
+D+ECSHYMK+ +AP VPLR+ +++LL+HINKTFGTLAFCRRWLER DGGS T+NG +GKQ KY+GALK LCD G+V AYPPLCDV+G Y AQYEHTI+MRPTC EV+SRGDD+
Sbjct: 71 EDMECSHYMKNFHAPHVPLRMQSSKRLLAHINKTFGTLAFCRRWLERDDGGSATVNGQNGKQTKYMGALKNLCDVGIVQAYPPLCDVKGCYTAQYEHTIMMRPTCKEVVSRGDDY 185
BLAST of mRNA_E-fasciculatus_F_contig10203.196.1 vs. uniprot
Match: A0A7S0K9N1_9STRA (Methionine aminopeptidase 2 n=1 Tax=Leptocylindrus aporus TaxID=1398097 RepID=A0A7S0K9N1_9STRA) HSP 1 Score: 198 bits (504), Expect = 5.450e-60 Identity = 85/115 (73.91%), Postives = 102/115 (88.70%), Query Frame = 1 Query: 19 QDLECSHYMKDINAPRVPLRLPKARQLLSHINKTFGTLAFCRRWLERPDGGSTTINGVSGKQEKYVGALKQLCDSGLVNAYPPLCDVRGSYVAQYEHTILMRPTCVEVLSRGDDF 363
+DLECSHYMK+ +AP VPLRLP++++LL+HINKTFGTLAFCRRWLER DGGS T+NG GKQE+Y+GALK LCD G+V YPPLCD++G Y AQYEHTIL+RPTC E++SRGDDF
Sbjct: 301 EDLECSHYMKNFDAPHVPLRLPRSKKLLNHINKTFGTLAFCRRWLERDDGGSQTVNGSKGKQERYMGALKNLCDVGIVQPYPPLCDIKGCYTAQYEHTILLRPTCKEIVSRGDDF 415 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10203.196.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig10203.196.1 >prot_E-fasciculatus_F_contig10203.196.1 ID=prot_E-fasciculatus_F_contig10203.196.1|Name=mRNA_E-fasciculatus_F_contig10203.196.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=122bp MAVRREQDLECSHYMKDINAPRVPLRLPKARQLLSHINKTFGTLAFCRRWback to top mRNA from alignment at E-fasciculatus_F_contig10203:4143..4845- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig10203.196.1 ID=mRNA_E-fasciculatus_F_contig10203.196.1|Name=mRNA_E-fasciculatus_F_contig10203.196.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=703bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10203:4143..4845- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10203:4143..4845- >mRNA_E-fasciculatus_F_contig10203.196.1 ID=mRNA_E-fasciculatus_F_contig10203.196.1|Name=mRNA_E-fasciculatus_F_contig10203.196.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=732bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10203:4143..4845- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |