mRNA_E-fasciculatus_F_contig10174.173.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig10174.173.1
Unique NamemRNA_E-fasciculatus_F_contig10174.173.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig10174.173.1 vs. uniprot
Match: D7FT65_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT65_ECTSI)

HSP 1 Score: 298 bits (763), Expect = 4.030e-98
Identity = 176/282 (62.41%), Postives = 204/282 (72.34%), Query Frame = 1 
Query:    1 MSLRALNGIREPGVLPAACAPASTGKSLAQPPDQIKPEAKATGMRWRVVGSGGATGVSSEGGVCGQAASEHGEDRKRGSEAKDRSEEDLEVEVGGGFGAGPESALSSAVAEQEIEGDGDNAVGLKGEKGPESDLMVPDQAVKLPKTEQGTSSPSSEKKIRQARHTLREKFDMLVAALTIVHIQFFVPTKHLQCLSLALNEACRSEPTLVVMVGGDYMPFDRLAVTKEDHGAGVPPATADNMMTGPGVMPESNRVPRIRPGGLVWCLPLEDFGQGDIDLTGVR 846
            M L+AL G+ EP   PA+ APASTG+SLAQ   QIK   KA GM  RVVGS GATG SSEGGVCGQAA+E+ ++RK GSEAK  SEE+ EVEVG GF AG E+ LS AV E+++EGDGD+ VGLKGEKG +SD + P QA KL KTEQG S  S  K I            ++ AAL IV  Q +V T+ LQC SL LNEACR  PTLVVMVGG YMP +RLA +K++H AGVPPA A +MMT PG+MPES RVP+I P GLVWCLPLE FGQGD+DL  VR
Sbjct:    1 MPLKALKGVLEPVFFPASGAPASTGESLAQS-GQIKTGVKANGMHGRVVGSVGATGASSEGGVCGQAAAENCKERKEGSEAKGLSEENPEVEVGDGFDAGAEAELSRAVTERDVEGDGDSTVGLKGEKGADSDSVAPRQAGKLLKTEQGKSFRSDNKGIT-----------VMEAALMIVIQQLYVWTRDLQCSSLTLNEACRRAPTLVVMVGGGYMPLERLAGSKKNHEAGVPPAMAGDMMTRPGLMPESKRVPQILPRGLVWCLPLEAFGQGDVDLPVVR 270
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BLAST of mRNA_E-fasciculatus_F_contig10174.173.1 vs. uniprot
Match: A0A6H5KTZ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTZ8_9PHAE)

HSP 1 Score: 237 bits (604), Expect = 2.770e-74
Identity = 153/271 (56.46%), Postives = 178/271 (65.68%), Query Frame = 1 
Query:    1 MSLRALNGIREPGVLPAACAPASTGKSLAQPPDQIKPEAKATGMRWRVVGSGGATGVSSEGGVCGQAASEHGEDRKRGSEAKDRSEEDLEVEVGGGFGAGPESALSSAVAEQEIEGDGDNAVGLKGEKGPESDLMVPDQAVKLPKTEQGTSSPSSEKKIRQAR--------HTLREKFDMLVAALTIVHIQFFVPTKHLQCLSLALNEACRSEPTLVVMVGGDYMPFDRLAVTKEDHGAGVPPATADNMMTGPGVMPESNRVPRIRPGGLV 789
            M L AL   RE    PAA APAST +SLAQ   QIK +A ATGM  RVVG G ATG SSE GVCGQA +EH ++RK GSEAK  SEED    VG GF AGP   LS AV EQ++EGDGD+ VGLK EKG + D + P QA KL KTEQG SS S  ++ +             L+ K    V  L ++  Q  V TK LQC SL L+EACR  PTLVV+VG  Y+P +RLA  K++H AGVPPATA NMMTGPG++PES R+PRI P GLV
Sbjct:    1 MPLEALKAARELVFFPAAGAPASTVESLAQS-GQIKTDATATGMHGRVVGLGRATGASSEDGVCGQAVAEHCKERKEGSEAKGLSEED----VGDGFDAGPGEELSRAVTEQDVEGDGDSTVGLKREKGADPDSVAPRQAGKLLKTEQGKSSRSQTRESQSGVSYLETIQVQFLQRKVIQPVFELVVIQ-QLHVSTKDLQCSSLTLSEACRRAPTLVVVVGRGYLPLERLAGCKKNHEAGVPPATAGNMMTGPGLIPESKRLPRILPRGLV 265
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BLAST of mRNA_E-fasciculatus_F_contig10174.173.1 vs. uniprot
Match: A0A6H5KHT3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHT3_9PHAE)

HSP 1 Score: 169 bits (429), Expect = 5.420e-49
Identity = 104/168 (61.90%), Postives = 123/168 (73.21%), Query Frame = 1 
Query:    7 LRALNGIREPGVLPAACAPASTGKSLAQPPDQIKPEAKATGMRWRVVGSGGATGVSSEGGVCGQAASEHGEDRKRGSEAKDRSEEDLEVEVGGGFGAGPESALSSAVAEQEIEGDGDNAVGLKGEKGPESDLMVPDQAVKLPKTEQGTSSPSSEKKIRQAR-HTLREK 507
            L+AL G++EPG  PAA APA T + LAQ   QIKP+AKATGM   VVGSGGATG SS+GGVCGQAA+E  E+RK G E K   EED EVEVG G+GAGP +  S AVAE+E+E DG++ VGL+G+KG  SD MVP +A KL KTE+G S  S  K+ RQA  HT REK
Sbjct:   19 LKALKGVQEPGFFPAAGAPAWTDEGLAQS-GQIKPDAKATGMTGMVVGSGGATGASSKGGVCGQAAAEPKEERKEGGEVKGLLEEDPEVEVGDGYGAGPAAGFSRAVAEREVECDGNSTVGLQGDKGAGSDSMVPREAGKLLKTERGKSCRSDSKRTRQAEWHTPREK 185
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BLAST of mRNA_E-fasciculatus_F_contig10174.173.1 vs. uniprot
Match: A0A6H5L6Q1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6Q1_9PHAE)

HSP 1 Score: 144 bits (362), Expect = 1.560e-36
Identity = 75/108 (69.44%), Postives = 82/108 (75.93%), Query Frame = 1 
Query:  523 AALTIVHIQFFVPTKHLQCLSLALNEACRSEPTLVVMVGGDYMPFDRLAVTKEDHGAGVPPATADNMMTGPGVMPESNRVPRIRPGGLVWCLPLEDFGQGDIDLTGVR 846
            AALTIV       T  LQC  L LNEACR  PTLVVMV GDYMP  RLA +K++H AGVPPATA +MMTGPG+MPES RVP+I P GLVWCLPLE FGQGD+DL  VR
Sbjct:    3 AALTIVR-----STMDLQCSPLTLNEACRRAPTLVVMVVGDYMPLKRLAGSKKNHEAGVPPATAGDMMTGPGLMPESKRVPQILPHGLVWCLPLEAFGQGDVDLPVVR 105
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10174.173.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FT65_ECTSI4.030e-9862.41Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KTZ8_9PHAE2.770e-7456.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KHT3_9PHAE5.420e-4961.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L6Q1_9PHAE1.560e-3669.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10174contigE-fasciculatus_F_contig10174:1043..2437 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-19_003420.1
Exons2
Model size846
Cds size846
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927518.1863687-CDS-E-fasciculatus_F_contig10174:1042..15511622927518.1863687-CDS-E-fasciculatus_F_contig10174:1042..1551Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10174 1043..1551 +
1695995575.9434302-CDS-E-fasciculatus_F_contig10174:1042..15511695995575.9434302-CDS-E-fasciculatus_F_contig10174:1042..1551Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10174 1043..1551 +
1622927518.1974823-CDS-E-fasciculatus_F_contig10174:2100..24371622927518.1974823-CDS-E-fasciculatus_F_contig10174:2100..2437Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10174 2101..2437 +
1695995575.954075-CDS-E-fasciculatus_F_contig10174:2100..24371695995575.954075-CDS-E-fasciculatus_F_contig10174:2100..2437Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10174 2101..2437 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10174.173.1prot_E-fasciculatus_F_contig10174.173.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig10174 1043..2437 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig10174.173.1

>prot_E-fasciculatus_F_contig10174.173.1 ID=prot_E-fasciculatus_F_contig10174.173.1|Name=mRNA_E-fasciculatus_F_contig10174.173.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=282bp
MSLRALNGIREPGVLPAACAPASTGKSLAQPPDQIKPEAKATGMRWRVVG
SGGATGVSSEGGVCGQAASEHGEDRKRGSEAKDRSEEDLEVEVGGGFGAG
PESALSSAVAEQEIEGDGDNAVGLKGEKGPESDLMVPDQAVKLPKTEQGT
SSPSSEKKIRQARHTLREKFDMLVAALTIVHIQFFVPTKHLQCLSLALNE
ACRSEPTLVVMVGGDYMPFDRLAVTKEDHGAGVPPATADNMMTGPGVMPE
SNRVPRIRPGGLVWCLPLEDFGQGDIDLTGVR
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mRNA from alignment at E-fasciculatus_F_contig10174:1043..2437+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig10174.173.1 ID=mRNA_E-fasciculatus_F_contig10174.173.1|Name=mRNA_E-fasciculatus_F_contig10174.173.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1395bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10174:1043..2437+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTCCCTAAGGGCCCTGAATGGGATCCGGGAGCCCGGGGTTCTTCCTGC
TGCTTGCGCTCCAGCTTCGACTGGCAAGAGTCTCGCCCAGCCGCCGGACC
AGATCAAGCCCGAAGCTAAGGCCACCGGGATGCGCTGGAGGGTGGTGGGT
TCGGGGGGGGCTACGGGGGTGTCGTCCGAGGGCGGGGTGTGCGGGCAAGC
GGCGTCAGAGCATGGTGAGGACAGGAAGAGGGGTAGCGAGGCGAAAGACC
GCTCGGAGGAGGACCTCGAGGTGGAGGTGGGGGGTGGTTTCGGAGCAGGA
CCAGAGTCAGCGCTGTCGAGCGCGGTGGCGGAGCAGGAGATCGAAGGTGA
CGGTGATAATGCCGTGGGGCTGAAGGGGGAGAAGGGCCCTGAGTCTGATT
TGATGGTGCCTGATCAAGCTGTAAAGTTGCCCAAGACGGAACAAGGCACA
TCCTCCCCCTCGAGTGAGAAGAAGATCAGGCAAGCACGGCACACTTTGAG
AGAGAAATTGTTTTAGGCTGAAGCAACCTCATCCTCGAAACAAGCGGGTG
TCGACAAGGTTACTTGTCTACATTTAGTTCTTGTTGCTACCTAACACAGG
CTCGAACACGTCAGAATCGGGAGTCAGCTGCCTAACAACGATGAAGGTGA
CCTCCTCCCTTGCCATAGCCGTGATGGTAGGGGATTTTTCCGTGGTTCAA
ACCTGGTCGGTGTTTATCAATTCCACAGAACGTGGGTAGAGAGAACGGGC
CACCCCCGTTACATCGCTCACGCCCTCTCCTCCAATATATATGTCTCCAC
CTTTAGGCACTGTGTATCGACTAAATGAAAAGGTCTGCCACGCAGGGTAC
CCAGCCTATCTCCTCCCCTACTCCTTCCCAGGCGCGCTCGCTAACCAAAC
TAACAGACCCGCGGACAGAGCCGTGGGGCCATCTGCCTTCAATTTTGGAG
TAACGGTCCAGAAGGTTACACGAAGAATGATCAATTCGCCCTTTGACCCT
GTCCCATTCCCTCCCTTTGCTTGCCACCATTCCGATGTGTCGGTTGCAGT
GTTGACAGCGATATGTTGGTGGCGGCCCTCACGATCGTACATATTCAGTT
TTTTGTGCCGACCAAGCATCTCCAATGCTTATCATTGGCGCTGAACGAGG
CGTGCCGAAGCGAACCGACTTTGGTGGTGATGGTTGGTGGAGACTACATG
CCATTCGATCGCCTGGCTGTAACAAAGGAAGACCACGGGGCCGGAGTGCC
ACCAGCTACGGCCGACAACATGATGACCGGGCCAGGCGTCATGCCGGAGT
CAAACAGGGTACCTCGCATCCGTCCGGGCGGTCTGGTGTGGTGCCTTCCC
CTGGAGGACTTCGGACAGGGTGACATTGACCTCACTGGTGTGCGT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10174:1043..2437+

>mRNA_E-fasciculatus_F_contig10174.173.1 ID=mRNA_E-fasciculatus_F_contig10174.173.1|Name=mRNA_E-fasciculatus_F_contig10174.173.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1692bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10174:1043..2437+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTCCCTAAGGGCCCTGAATGGGATCCGGGAGCCCGGGGTTCTTCCTGC
TGCTTGCGCTCCAGCTTCGACTGGCAAGAGTCTCGCCCAGCCGCCGGACC
AGATCAAGCCCGAAGCTAAGGCCACCGGGATGCGCTGGAGGGTGGTGGGT
TCGGGGGGGGCTACGGGGGTGTCGTCCGAGGGCGGGGTGTGCGGGCAAGC
GGCGTCAGAGCATGGTGAGGACAGGAAGAGGGGTAGCGAGGCGAAAGACC
GCTCGGAGGAGGACCTCGAGGTGGAGGTGGGGGGTGGTTTCGGAGCAGGA
CCAGAGTCAGCGCTGTCGAGCGCGGTGGCGGAGCAGGAGATCGAAGGTGA
CGGTGATAATGCCGTGGGGCTGAAGGGGGAGAAGGGCCCTGAGTCTGATT
TGATGGTGCCTGATCAAGCTGTAAAGTTGCCCAAGACGGAACAAGGCACA
TCCTCCCCCTCGAGTGAGAAGAAGATCAGGCAAGCACGGCACACTTTGAG
AGAGAAATTATGTCCCTAAGGGCCCTGAATGGGATCCGGGAGCCCGGGGT
TCTTCCTGCTGCTTGCGCTCCAGCTTCGACTGGCAAGAGTCTCGCCCAGC
CGCCGGACCAGATCAAGCCCGAAGCTAAGGCCACCGGGATGCGCTGGAGG
GTGGTGGGTTCGGGGGGGGCTACGGGGGTGTCGTCCGAGGGCGGGGTGTG
CGGGCAAGCGGCGTCAGAGCATGGTGAGGACAGGAAGAGGGGTAGCGAGG
CGAAAGACCGCTCGGAGGAGGACCTCGAGGTGGAGGTGGGGGGTGGTTTC
GGAGCAGGACCAGAGTCAGCGCTGTCGAGCGCGGTGGCGGAGCAGGAGAT
CGAAGGTGACGGTGATAATGCCGTGGGGCTGAAGGGGGAGAAGGGCCCTG
AGTCTGATTTGATGGTGCCTGATCAAGCTGTAAAGTTGCCCAAGACGGAA
CAAGGCACATCCTCCCCCTCGAGTGAGAAGAAGATCAGGCAAGCACGGCA
CACTTTGAGAGAGAAATTCGATATGTTGGTGGCGGCCCTCACGATCGTAC
ATATTCAGTTTTTTGTGCCGACCAAGCATCTCCAATGCTTATCATTGGCG
CTGAACGAGGCGTGCCGAAGCGAACCGACTTTGGTGGTGATGGTTGGTGG
AGACTACATGCCATTCGATCGCCTGGCTGTAACAAAGGAAGACCACGGGG
CCGGAGTGCCACCAGCTACGGCCGACAACATGATGACCGGGCCAGGCGTC
ATGCCGGAGTCAAACAGGGTACCTCGCATCCGTCCGGGCGGTCTGGTGTG
GTGCCTTCCCCTGGAGGACTTCGGACAGGGTGACATTGACCTCACTGGTG
TGCGTCGATATGTTGGTGGCGGCCCTCACGATCGTACATATTCAGTTTTT
TGTGCCGACCAAGCATCTCCAATGCTTATCATTGGCGCTGAACGAGGCGT
GCCGAAGCGAACCGACTTTGGTGGTGATGGTTGGTGGAGACTACATGCCA
TTCGATCGCCTGGCTGTAACAAAGGAAGACCACGGGGCCGGAGTGCCACC
AGCTACGGCCGACAACATGATGACCGGGCCAGGCGTCATGCCGGAGTCAA
ACAGGGTACCTCGCATCCGTCCGGGCGGTCTGGTGTGGTGCCTTCCCCTG
GAGGACTTCGGACAGGGTGACATTGACCTCACTGGTGTGCGT
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