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Homology
BLAST of mRNA_E-fasciculatus_F_contig10168.170.1 vs. uniprot
Match: A0A6H5KBF2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBF2_9PHAE) HSP 1 Score: 369 bits (948), Expect = 3.020e-113 Identity = 274/406 (67.49%), Postives = 291/406 (71.67%), Query Frame = 1
Query: 196 RCPYRSRTRRNTPPIEASPFCLCLVAGRPPGELSRSLAKVARAREALDALDEGRAHAGRWCRWASSALVAAESESAAPPPRSGATAAGSRGDAGATAVPEDTASLIAAAAAATISEPSEQGNQATGDVRRDTMLRQTRCLQEGLERRVRAAAPPATGTPAAGSTVPPWLLAATAAIEPSRQDGSVPARTGSLESDE-----------------------------------LRRGLRRLA-----EEIDLRLGETALTNTLEERRTQRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPAPHTRQAFPSTSAVGEVGCSGDLRGHDRGSETQVLAESSSPAEPSALRGWDAD-DAGTEMEWAGSSALERSRVAHRERLESLLSACVEAMPLEPRGGGW 1290
RC SR +++TPP EASPFCLCLVAGR PGELSRSLAKV+RARE LDALDEGR HAGRWCRWASSALVAAES APPPRSGA + + G GA +PEDTASLIAAAA TISEP+E NQATGDVR D LRQT CLQEGLERRVRAA PPA GTPAAGS VP WL AA A +EP+R+DGS P RTG L R +A E IDLRLGE ALT TLEE+R QRXXXXXXXXXXXXXXXXXXXXXXXXXXXX PPA HTRQAFP TSAV EV CS DLRGHD GSE Q+LA SSSPAE SAL WD + D GT +EWAGSSALERSRVA+RERLESLLSACVEAMPLEPRGGGW
Sbjct: 658 RCQRPSR-KKHTPPAEASPFCLCLVAGRSPGELSRSLAKVSRAREVLDALDEGREHAGRWCRWASSALVAAES---APPPRSGAVSGAAAGSRGAPRLPEDTASLIAAAA--TISEPAED-NQATGDVR-DATLRQTWCLQEGLERRVRAALPPAAGTPAAGSPVPSWLSAAIAMLEPTRRDGSAPMRTGRTYGHASAGPPGTARPRPNVGRTRTVPIPLLSAPPCVGCLCLTTTARIVAFVPDQEGIDLRLGEAALTTTLEEQRIQRXXXXXXXXXXXXXXXXXXXXXXXXXXXXHR-------PPALHTRQAFPPTSAVEEVSCSRDLRGHDGGSEAQLLAGSSSPAE-SAL--WDRNADKGTGVEWAGSSALERSRVANRERLESLLSACVEAMPLEPRGGGW 1045
BLAST of mRNA_E-fasciculatus_F_contig10168.170.1 vs. uniprot
Match: D7G2T0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2T0_ECTSI) HSP 1 Score: 228 bits (582), Expect = 4.440e-64 Identity = 139/190 (73.16%), Postives = 149/190 (78.42%), Query Frame = 1
Query: 196 RCPYRSRTRRNTPPIEASPFCLCLVAGRPPGELSRSLAKVARAREALDALDEGRAHAGRWCRWASSALVAAESESAAPPPRSGATAAGSRGDAGATAVPEDTASLIAAAAAATISEPSEQGNQATGDVRRDTMLRQTRCLQEGLERRVRAAAPPATGTPAAGSTVPPWLLAATAAIEPSRQDGSVPARTG 765
RC SR ++ TP E SPFCLCLVA RPPGELSRSLAKV RARE LDALDEGR HAGRWCRWASSALVAAES A PPRSGA + + G GA +PEDT+SLIAAAA TISEP E NQ TGD+R D MLRQT CLQEGLERRVRAA PPA GT AAGSTVPPWL AATA +E +R+DGS P RTG
Sbjct: 386 RCQRPSR-KKCTPRAEVSPFCLCLVACRPPGELSRSLAKVTRAREVLDALDEGREHAGRWCRWASSALVAAES---AAPPRSGADSGAAAGSRGAPRLPEDTSSLIAAAA--TISEPPED-NQTTGDLR-DAMLRQTWCLQEGLERRVRAALPPAAGTHAAGSTVPPWLSAATAMLEQTRRDGSAPTRTG 567
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-13_004250.1 |
| Exons | 4 |
| Model size | 1617 |
| Cds size | 1212 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig10168.170.1 >prot_E-fasciculatus_F_contig10168.170.1 ID=prot_E-fasciculatus_F_contig10168.170.1|Name=mRNA_E-fasciculatus_F_contig10168.170.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=404bp
MSGSRREGQAAAAAAAALATKPTKTSSSSSSSSSSSSSRCPYRSRTRRNT
PPIEASPFCLCLVAGRPPGELSRSLAKVARAREALDALDEGRAHAGRWCR
WASSALVAAESESAAPPPRSGATAAGSRGDAGATAVPEDTASLIAAAAAA
TISEPSEQGNQATGDVRRDTMLRQTRCLQEGLERRVRAAAPPATGTPAAG
STVPPWLLAATAAIEPSRQDGSVPARTGSLESDELRRGLRRLAEEIDLRL
GETALTNTLEERRTQRQRQRQQQQQQQHKQQPQQQPMPQPQQQQQRRRRQ
RQRPPAPHTRQAFPSTSAVGEVGCSGDLRGHDRGSETQVLAESSSPAEPS
ALRGWDADDAGTEMEWAGSSALERSRVAHRERLESLLSACVEAMPLEPRG
GGW* back to topmRNA from alignment at E-fasciculatus_F_contig10168:3..3696+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig10168.170.1 ID=mRNA_E-fasciculatus_F_contig10168.170.1|Name=mRNA_E-fasciculatus_F_contig10168.170.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3694bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10168:3..3696+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAACAACAACAACAACAACGACAACAGCAACCCTCCCCCACGAGCGCGTC
TCCCGCCGGAACAGCCGACGCTGCTGCGGTTATGTCCGGGTCGCGGCGGG
AGGGGCAAGCAGCAGCCGCGGCAGCAGCAGCCCTCGCGACTAAACCAACG
AAGACGAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCGCTG
CCCCTATCGCTCGAGAACAAGAAGAAACACGCCGCCTATCGAGGCGTCCC
CGTTCTGCCTGTGCCTCGTGGCCGGCAGGCCGCCGGGCGAACTTTCCCGC
TCCCTCGCGAAGGTCGCGAGGGCCCGCGAGGCGCTGGACGCACTCGACGA
GGGGCGCGCGCACGCTGGGCGGTGGTGCCGGTGGGCCTCCTCCGCCCTCG
TGGCGGCGGAATCGGAATCGGCGGCGCCCCCCCCCCGAAGCGGCGCCACC
GCAGCAGGAAGTAGAGGTGAGTTGTGTTTTTTGGGGAGGCTGGCTGTTTT
CTGTTTTCTGTTTATTTTTTTTCCTGTAGGAGTTTTGATTTTTTTGTTTT
GCCTGACTGGGGCGTGAGATTTTCGGTGAAATATCCGTCTGTCGCGTTTT
TCTTGCCCTCGGGGCGGCGGCGTCTCGTAGGTGCCAGACGTAAGGAGACC
AATGGTGATGTAGCAACGGCGACTACAACAATAGCACCAAGAGCACCAAA
GGAGATTCACCAAAAAGCCGGGATGAAGCTAAATAGGGCTTTGTGGTCCT
TGGAAAGATCGCCAGTGTGACGGCACGTCCCGTCAATAATAGCATGCAAC
GCCATCCACCCGTATCTTCTTGGACCAACCCTAACCCGGAGTTCCGATCA
CTACCTCTACTTCTGCGTACAGGTGACCGTATGTCCCGGTAATAATAGTA
TGCCTCCTCACCCATCCATGCCTTGTTGGACCAACCCCAACCCCTAAATC
CGCTCATTACCTCTATTTCTGAATTCAATTGAACGATGCCCTGTGAATAA
TAGTATCCAACACCATCCATCCATTTCTTGTTGGACCAACCGTAACCCTG
AGTTCCGCTCACTACCTCTACTTTTGAGCACAGGTGAACGCATGTCCCGT
CAATGACAGTACGCCACGTCAGCCATCCATATCTTATTGGACCAACGCTA
ACCCCGAGTTCCGCTCACTACCTCTCTTTCTGAGTACAGGCGAATGCTGC
CCTGTGAATATTTTATGTGCAACGTCCGTCATCCATACCTTGTTGGGTCA
ACCCTGACCCCGAATTCCTCGCTACGTCTGCTTTTTTTTTATAATGTTAT
TTTACTATTCTGAGTGCAGGCGCAACAGCGGTGCCTGAAGACACAGCGTC
TTTGATAGCGGCAGCGGCGGCGGCAACGATTTCTGAACCCTCAGAACAGG
GCAACCAAGCGACCGGAGACGTGCGGCGCGATACCATGCTGCGGCAAACG
CGGTGCTTGCAGGAGGGGTTGGAGAGGCGCGTGAGAGCTGCCGCCCCCCC
CGCCACCGGCACGCCCGCCGCAGGAAGCACCGTGCCGCCATGGCTATTGG
CGGCGACAGCGGCAATAGAGCCGTCGAGACAGGATGGCTCCGTCCCGGCG
AGGACAGGCAGGTTAGTGACCGATTTTTCGTTTTCATGTCCGGGAGAAAA
CAGTGTGGTCGAGCGCAATTGGCGAGACGGTTTGGCCTTGAATACATGGT
ACACTTGTTTTGTTGGCTGCTGTTGTTGCTGTTGTTGATTGGTATGTTGT
TATTTTTTGTGTGTTGCTGTTGCTGCTGCTGCTGCTGCAGAAGTTGTTGT
TGATATCCTTGAGGCCTTTGTTTTCTGAACAGTAGGACTTATGGCCACGC
AAGTGCCGGATCCCCTGAAGCGACACGACCGAACATCGGCAGAAGAACCC
GCACGGCACCCTTCCCTGTTCTCTCTGTGGCGGGCATTGGCTGTATCTGC
CTACCCACTGACACGTCGTTTCTGTGCCGGATCAAGGAACTGTGTTGTCG
CATCCCCGGAAATACAAAACCGTATCATAGCTCCTGTTCATTCCTGAAAT
GAATGCTCTGTGTGGTACCATGACCCTTATACCTTGGTGCGAAGGTCCTC
GACTGCTGTTGACCCGAAGTTTTTTCTTGGCGTGGCGTGATCCGAGTGGG
TGCACGAGAGCCGCATCCCTTCTACCAAATAACCCCCCATGCCAGACAGC
TGTGTCACTCCGTAGCGGGGAAGGGCGGTCGGAGGGGTGGTCGGGCCGAT
CTGGTTCGGCGAGCGTCGCATTCCGGTGACACTGGACTCCACTAGTCCAC
ACTCCTACCGTAGGTGACACAAGATACCACACCCGCTGGACCGATGTTCA
CAGCTCGACTACTCCACAACGAACATTTTTTTGACAAAATCAAGAGATAT
TTTTTCGGAAAGATCTTTTCTCGACGAGACGATCCCAACGCCGCCAATTT
CGGCACCGCCACTCTTTCTACCGTAGAGTACAACGGGACTTTGATGATCA
GTCCAGGGGGTTGTGGTGTCTTGTGTCACCCACGGTGTTTTACCCGGGCC
GCTGCATTGCGTGGTCGGGTCGTTGAAACCACCAAGAACGAAGCGCAGCT
GCTCTTAGGGCCGTTTTATACATGGCTGTTTTTTCCAAATTTTTGGAATC
CAAAAATTTGGAAGTCGTCCAAAATTTGGAAAAAACAGCCATGTATAAAA
CGGCCCTTACACCGGCGTTTCAAGCCCATGTGTATGTCGTACTTGTACCT
CCCAGCGCACAAGTTCTAGTGCCCGCGTTTCAAACCCATCTGTATGTCGT
ACTTTTGTCTCCCAACCTGTGTGCCAGTCTCGAAAGTGATGAGCTACGAA
GAGGTCTGCGGCGATTGGCGGAGGAGATTGATTTGCGACTCGGGGAAACG
GCGCTGACGAACACCCTGGAAGAGCGGCGAACACAGCGGCAGCGGCAGCG
GCAGCAGCAACAGCAACAGCAGCACAAGCAGCAGCCGCAGCAGCAGCCAA
TGCCACAACCACAACAACAACAACAACGACGACGACGACAACGACAACGA
CCGCCGGCGCCGCACACCAGACAGGCGTTTCCATCCACATCGGCCGTAGG
AGAGGTTGGATGTAGCGGGGACCTTCGTGGGCATGATCGGGGTAGTGAGA
CACAAGTGTTGGCGGAGAGCTCATCCCCAGCAGAACCCTCCGCTCTTCGG
GGCTGGGACGCCGACGACGCGGGAACGGAGATGGAGTGGGCGGGGAGCAG
CGCGCTGGAGCGGTCGAGGGTGGCACACAGAGAAAGGCTGGAATCGCTGC
TGTCGGCTTGCGTCGAGGCGATGCCGCTCGAGCCCCGAGGAGGGGGGTGG
TAGGACAGGAGCAGTACTGCTGTGGCCTTCGGAGGGTTTTTGTGACATTT
ATTTAGTAAACACGCTGGATGGATAAAGCATGCAGTCGGGGAGGCTGGGT
TAGGGTTGGGGTTGATACGATCTGCGTACCCCCTTCGCGAGAACTTGAGT
GTTGTTAGGAAAAACAAATATACACACAGAAAGACTACCCGTTCGAGGTA
TNNNNNNNNNNGAGGTATAACCACAATCGAGGGGATGTGTTGGAGTCTTT
ACAGAGTGAGTAGAGGAGCCCCAGCTGGGTACTTGACTTATTTCGAGTTT
GTTTAAGCCTTTACACTGTGTTATGCGGAAATTTACTACGCTAC back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig10168:3..3696+ >mRNA_E-fasciculatus_F_contig10168.170.1 ID=mRNA_E-fasciculatus_F_contig10168.170.1|Name=mRNA_E-fasciculatus_F_contig10168.170.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2424bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10168:3..3696+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTCCGGGTCGCGGCGGGAGGGGCAAGCAGCAGCCGCGGCAGCAGCAGC
CCTCGCGACTAAACCAACGAAGACGAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCCGCTGCCCCTATCGCTCGAGAACAAGAAGAAACACG
CCGCCTATCGAGGCGTCCCCGTTCTGCCTGTGCCTCGTGGCCGGCAGGCC
GCCGGGCGAACTTTCCCGCTCCCTCGCGAAGGTCGCGAGGGCCCGCGAGG
CGCTGGACGCACTCGACGAGGGGCGCGCGCACGCTGGGCGGTGGTGCCGG
TGGGCCTCCTCCGCCCTCGTGGCGGCGGAATCGGAATCGGCGGCGCCCCC
CCCCCGAAGCGGCGCCACCGCAGCAGGAAGTAGAGGTGAATGTCCGGGTC
GCGGCGGGAGGGGCAAGCAGCAGCCGCGGCAGCAGCAGCCCTCGCGACTA
AACCAACGAAGACGAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCCGCTGCCCCTATCGCTCGAGAACAAGAAGAAACACGCCGCCTATCGA
GGCGTCCCCGTTCTGCCTGTGCCTCGTGGCCGGCAGGCCGCCGGGCGAAC
TTTCCCGCTCCCTCGCGAAGGTCGCGAGGGCCCGCGAGGCGCTGGACGCA
CTCGACGAGGGGCGCGCGCACGCTGGGCGGTGGTGCCGGTGGGCCTCCTC
CGCCCTCGTGGCGGCGGAATCGGAATCGGCGGCGCCCCCCCCCCGAAGCG
GCGCCACCGCAGCAGGAAGTAGAGGTGATGCAGGCGCAACAGCGGTGCCT
GAAGACACAGCGTCTTTGATAGCGGCAGCGGCGGCGGCAACGATTTCTGA
ACCCTCAGAACAGGGCAACCAAGCGACCGGAGACGTGCGGCGCGATACCA
TGCTGCGGCAAACGCGGTGCTTGCAGGAGGGGTTGGAGAGGCGCGTGAGA
GCTGCCGCCCCCCCCGCCACCGGCACGCCCGCCGCAGGAAGCACCGTGCC
GCCATGGCTATTGGCGGCGACAGCGGCAATAGAGCCGTCGAGACAGGATG
GCTCCGTCCCGGCGAGGACAGGCAGTGCAGGCGCAACAGCGGTGCCTGAA
GACACAGCGTCTTTGATAGCGGCAGCGGCGGCGGCAACGATTTCTGAACC
CTCAGAACAGGGCAACCAAGCGACCGGAGACGTGCGGCGCGATACCATGC
TGCGGCAAACGCGGTGCTTGCAGGAGGGGTTGGAGAGGCGCGTGAGAGCT
GCCGCCCCCCCCGCCACCGGCACGCCCGCCGCAGGAAGCACCGTGCCGCC
ATGGCTATTGGCGGCGACAGCGGCAATAGAGCCGTCGAGACAGGATGGCT
CCGTCCCGGCGAGGACAGGCAGTCTCGAAAGTGATGAGCTACGAAGAGGT
CTGCGGCGATTGGCGGAGGAGATTGATTTGCGACTCGGGGAAACGGCGCT
GACGAACACCCTGGAAGAGCGGCGAACACAGCGGCAGCGGCAGCGGCAGC
AGCAACAGCAACAGCAGCACAAGCAGCAGCCGCAGCAGCAGCCAATGCCA
CAACCACAACAACAACAACAACGACGACGACGACAACGACAACGACCGCC
GGCGCCGCACACCAGACAGGCGTTTCCATCCACATCGGCCGTAGGAGAGG
TTGGATGTAGCGGGGACCTTCGTGGGCATGATCGGGGTAGTGAGACACAA
GTGTTGGCGGAGAGCTCATCCCCAGCAGAACCCTCCGCTCTTCGGGGCTG
GGACGCCGACGACGCGGGAACGGAGATGGAGTGGGCGGGGAGCAGCGCGC
TGGAGCGGTCGAGGGTGGCACACAGAGAAAGGCTGGAATCGCTGCTGTCG
GCTTGCGTCGAGGCGATGCCGCTCGAGCCCCGAGGAGGGGGGTGGTAGTC
TCGAAAGTGATGAGCTACGAAGAGGTCTGCGGCGATTGGCGGAGGAGATT
GATTTGCGACTCGGGGAAACGGCGCTGACGAACACCCTGGAAGAGCGGCG
AACACAGCGGCAGCGGCAGCGGCAGCAGCAACAGCAACAGCAGCACAAGC
AGCAGCCGCAGCAGCAGCCAATGCCACAACCACAACAACAACAACAACGA
CGACGACGACAACGACAACGACCGCCGGCGCCGCACACCAGACAGGCGTT
TCCATCCACATCGGCCGTAGGAGAGGTTGGATGTAGCGGGGACCTTCGTG
GGCATGATCGGGGTAGTGAGACACAAGTGTTGGCGGAGAGCTCATCCCCA
GCAGAACCCTCCGCTCTTCGGGGCTGGGACGCCGACGACGCGGGAACGGA
GATGGAGTGGGCGGGGAGCAGCGCGCTGGAGCGGTCGAGGGTGGCACACA
GAGAAAGGCTGGAATCGCTGCTGTCGGCTTGCGTCGAGGCGATGCCGCTC
GAGCCCCGAGGAGGGGGGTGGTAG back to top
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