mRNA_E-fasciculatus_F_contig10167.169.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig10167.169.1 vs. uniprot
Match: D7G847_ECTSI (NTP_transf_2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G847_ECTSI) HSP 1 Score: 475 bits (1222), Expect = 3.920e-147 Identity = 289/389 (74.29%), Postives = 294/389 (75.58%), Query Frame = 1 Query: 157 PLAEERVAHYADGNXXXXXXXXXXX----VGGLCATRSSDSGSSGGSASGYPD-EPLANVSSAGGGAVSSACGSPASVDRAGGTSDDVENMEGAKSESAPITVGSIGEHQQPNPPVADGSDDGRNPXXXXXXXXXXXXXXXXXXXXXXXQPAGGVSTKGPGDVNDQAALADAAXXXXXXXXXXXGSPGESVVGGAARAPTPPVGVHPVQAPQXXXXXXXXXXXXXXXXPRVHHPGSAMLPSAAQQAQYNLGMNAELFNMKHMEINLSQEEVDRADLSGMTPGEVLVRFLAFFGRQFDPTRVGISVGRGAISNPFALTPTVDPRTGMPVMEAHVVIEDPLDRDQNVARSCFGFPQVQWLFGQCLSVLQERGSDMAEFDRDADLLQMLLYY 1308
PL EERV Y +G+XXXXXXXXXXX VGGLCATRSSDSGSSGGSASGYP EPLANVSSAGG AVSSACGSPAS DRAGG SDD ENMEGAKSESAPITVGSI EHQQPNPPV DGS DGR+P X QPAGGVSTKGPGDVNDQAALADAA GSP ESVVGGA RAPTPP QAQYNLGMNAELFNMKHMEINLSQEEVDRADLSGMTPGEVLVRFLAFFGRQFDPTRVGISVGRGAISNPFALTP+VDPRTGMPVMEAHVVIEDPLDRDQNVARSCFGFPQVQWLFGQ LSVLQERG+DMAEFDRDADLLQMLLYY
Sbjct: 1749 PLVEERVGQYVEGDXXXXXXXXXXXXXXXVGGLCATRSSDSGSSGGSASGYPGHEPLANVSSAGGDAVSSACGSPASADRAGGMSDDAENMEGAKSESAPITVGSIAEHQQPNPPVTDGSYDGRSPPLPXPPLNTAPSQREQSSSPPAAQPAGGVSTKGPGDVNDQAALADAAASAASANSS--GSPDESVVGGA-RAPTPP------------------------------------------QAQYNLGMNAELFNMKHMEINLSQEEVDRADLSGMTPGEVLVRFLAFFGRQFDPTRVGISVGRGAISNPFALTPSVDPRTGMPVMEAHVVIEDPLDRDQNVARSCFGFPQVQWLFGQYLSVLQERGADMAEFDRDADLLQMLLYY 2092
BLAST of mRNA_E-fasciculatus_F_contig10167.169.1 vs. uniprot
Match: A0A835Z4K4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4K4_9STRA) HSP 1 Score: 120 bits (300), Expect = 8.690e-25 Identity = 72/166 (43.37%), Postives = 98/166 (59.04%), Query Frame = 1 Query: 841 PGSAMLPS--AAQQAQYNLGMNAELFNMKHMEINLSQEEVDRADLSGMTPGEVLVRFLAFFGRQFDPTRVGISVGRGAISNPFALTPTVDPRTGMPVMEAHVVIEDPLDRDQN--------VARSCFGFPQVQWLFGQCLSVLQERGSDMAEFDRDADLLQMLLYY 1308
PG+ LP+ AA A +LG + F + + +++ E++ DLS MTPG L++FLAF+ R FDP GISVGRG + +PF L VD TG+ A + IEDPLD +N V+ SCF FP+VQWLF QCL+ L+ RG + + D +LLQ L Y
Sbjct: 1793 PGAGPLPTMAAAVAAANHLGPPRDAFPLDPPD--MTEAELEAEDLSDMTPGACLLKFLAFYSRAFDPLSYGISVGRGRLGSPFPLDLPVDAATGLRAAAA-LTIEDPLDMQRNDPSATIRNVSHSCFRFPEVQWLFSQCLAELEVRGPEKLRRNPDTNLLQDLCQY 1955
BLAST of mRNA_E-fasciculatus_F_contig10167.169.1 vs. uniprot
Match: A0A7S1YUY2_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1YUY2_9STRA) HSP 1 Score: 59.7 bits (143), Expect = 1.350e-5 Identity = 44/121 (36.36%), Postives = 66/121 (54.55%), Query Frame = 1 Query: 976 MTPGEVLVRFLAFFGRQFDPTRVGISVGRGAIS---NPFA---LTP--------TVDPRTGMPVMEAHVVIEDPLD--RDQNVARSCFGFPQVQWLFGQC---LSVLQERGSDMAEFDRDA 1281
+T G++L+ FL F+G+ FD I VG GA N +A L+P T+DP TGM ++ +V+ DPL+ NVA+SCF + ++W+F QC LS ER + DR++
Sbjct: 2143 ITAGKLLMHFLLFYGQYFDAQTTSIDVG-GANHPDYNRYANHQLSPFMPRRAGGTIDPITGMYTVDP-IVVYDPLEGAEGNNVAKSCFAWSSIRWVFAQCYMTLSSAVERSGGGSSRDRNS 2261
BLAST of mRNA_E-fasciculatus_F_contig10167.169.1 vs. uniprot
Match: A0A7S2I5M6_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2I5M6_9STRA) HSP 1 Score: 54.3 bits (129), Expect = 3.900e-5 Identity = 37/101 (36.63%), Postives = 55/101 (54.46%), Query Frame = 1 Query: 988 EVLVRFLAFFGRQFDPTRVGISVGRGAISNP-------FALTP--------TVDPRTGMPVMEAHVVIEDPLD--RDQNVARSCFGFPQVQWLFGQCLSVL 1239
++L+ FL F+G+ FD I VG GA ++P + L P T+DP TGM ++ +V+ DPL+ NVARSCF + ++W+F QC L
Sbjct: 1 KLLMHFLLFYGQYFDSQSTAIDVG-GA-NHPEYNRYTHYQLPPFMPRRPGGTIDPVTGMFTVDP-IVVYDPLEGAEGNNVARSCFAWGSIRWVFAQCYMTL 98
BLAST of mRNA_E-fasciculatus_F_contig10167.169.1 vs. uniprot
Match: A0A7S2UCB2_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UCB2_9STRA) HSP 1 Score: 57.0 bits (136), Expect = 9.160e-5 Identity = 41/113 (36.28%), Postives = 61/113 (53.98%), Query Frame = 1 Query: 985 GEVLVRFLAFFGRQFDP--TRVGISVGRGAISNPFA-------LTP--------TVDPRTGMPVMEAHVVIEDPLD--RDQNVARSCFGFPQVQWLFGQC---LSVLQERGSD 1257
G++L+ FL F+G+ FD T + +S N FA L+P T+DP TG+ ++ +V+ DPL + NVARSCF + ++W+F QC LS + ERG D
Sbjct: 1950 GKLLMHFLLFYGQHFDAQSTSIDVSGTHHPDCNYFAPSELQDHLSPFISRKAGGTIDPITGVFTVDP-IVVYDPLAGCENNNVARSCFAWSSIRWVFSQCYMTLSSVVERGGD 2061 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10167.169.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 5 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig10167.169.1 >prot_E-fasciculatus_F_contig10167.169.1 ID=prot_E-fasciculatus_F_contig10167.169.1|Name=mRNA_E-fasciculatus_F_contig10167.169.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=433bp MGPPAPPPPPSPVPPPTLVQAAAPAHVVVGSGHEMGAPGGGGGDEQVAPLback to top mRNA from alignment at E-fasciculatus_F_contig10167:1533..4913+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig10167.169.1 ID=mRNA_E-fasciculatus_F_contig10167.169.1|Name=mRNA_E-fasciculatus_F_contig10167.169.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3381bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10167:1533..4913+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10167:1533..4913+ >mRNA_E-fasciculatus_F_contig10167.169.1 ID=mRNA_E-fasciculatus_F_contig10167.169.1|Name=mRNA_E-fasciculatus_F_contig10167.169.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2598bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10167:1533..4913+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |