mRNA_E-fasciculatus_F_contig10167.168.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig10167.168.1
Unique NamemRNA_E-fasciculatus_F_contig10167.168.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig10167.168.1 vs. uniprot
Match: D7G847_ECTSI (NTP_transf_2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G847_ECTSI)

HSP 1 Score: 152 bits (383), Expect = 4.450e-41
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1 
Query:    1 GIASSKWVRDCIQGGKYGFALPAVMVLKEILCQRGLNQPWSGGLSSYSLINMMITVLQRAEVERARARRIVACAQA 228
            GIASSKWVRDCIQGGKYGFALPAVMVLKEILCQRGLNQPWSGGLSSYSLINMMITVLQRAEVERARARRIVACAQA
Sbjct: 1588 GIASSKWVRDCIQGGKYGFALPAVMVLKEILCQRGLNQPWSGGLSSYSLINMMITVLQRAEVERARARRIVACAQA 1663
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BLAST of mRNA_E-fasciculatus_F_contig10167.168.1 vs. uniprot
Match: I2CR29_NANGC (Poly rna polymerase (Fragment) n=5 Tax=Monodopsidaceae TaxID=425072 RepID=I2CR29_NANGC)

HSP 1 Score: 73.6 bits (179), Expect = 1.630e-13
Identity = 37/62 (59.68%), Postives = 47/62 (75.81%), Query Frame = 1 
Query:    1 GIASSKWVRDCIQGGK-YGFALPAVMVLKEILCQRGLNQPWSGGLSSYSLINMMITVLQRAE 183
            GIASS  +RD +  GK Y  A+P  +VLK +L QRGLNQPW GG+SSY+L+ M+ITVLQ+ E
Sbjct: 1282 GIASSLLIRDLVGPGKPYAHAVPLTLVLKALLMQRGLNQPWCGGISSYALMLMVITVLQQFE 1343
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BLAST of mRNA_E-fasciculatus_F_contig10167.168.1 vs. uniprot
Match: A0A835Z4K4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4K4_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 4.170e-13
Identity = 33/42 (78.57%), Postives = 37/42 (88.10%), Query Frame = 1 
Query:   46 KYGFALPAVMVLKEILCQRGLNQPWSGGLSSYSLINMMITVL 171
            K+   LPA +VLKE+LCQR LNQPWSGGLSSYSLINMM+TVL
Sbjct: 1697 KHAPCLPATLVLKELLCQRDLNQPWSGGLSSYSLINMMVTVL 1738
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BLAST of mRNA_E-fasciculatus_F_contig10167.168.1 vs. uniprot
Match: A0A7S4A1M6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A1M6_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 8.010e-11
Identity = 30/63 (47.62%), Postives = 48/63 (76.19%), Query Frame = 1 
Query:    1 GIASSKWVRDCIQGGKYGFALPAVMVLKEILCQRGLNQPWSGGLSSYSLINMMITVLQRAEVE 189
            G+ASS++  + +  G++    P ++VLKE+LCQRGLN+P++GGLSSYSL+ + +T L +A V+
Sbjct:   56 GLASSRYALEAM--GRWPELAPLLLVLKELLCQRGLNEPFTGGLSSYSLLLLAMTALLQAGVD 116
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BLAST of mRNA_E-fasciculatus_F_contig10167.168.1 vs. uniprot
Match: A0A7S3Y313_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y313_HETAK)

HSP 1 Score: 60.1 bits (144), Expect = 6.970e-10
Identity = 26/36 (72.22%), Postives = 32/36 (88.89%), Query Frame = 1 
Query:   64 PAVMVLKEILCQRGLNQPWSGGLSSYSLINMMITVL 171
            P  +VLKE+L QRGLNQPWSGGLSSYSL+ +++TVL
Sbjct:   55 PLTLVLKELLAQRGLNQPWSGGLSSYSLVLLVLTVL 90
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BLAST of mRNA_E-fasciculatus_F_contig10167.168.1 vs. uniprot
Match: A0A8J2SRI7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SRI7_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 7.310e-10
Identity = 30/63 (47.62%), Postives = 48/63 (76.19%), Query Frame = 1 
Query:    1 GIASSKWVRDCIQGGKYGFALPAVMVLKEILCQRGLNQPWSGGLSSYSLINMMITVLQRAEVE 189
            G+ASS++  + +  G++    P ++VLKE+LCQRGLN+P++GGLSSYSL+ + +T L +A V+
Sbjct:  630 GLASSRYALEAM--GRWPELAPLLLVLKELLCQRGLNEPFTGGLSSYSLLLLAMTALLQAGVD 690
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BLAST of mRNA_E-fasciculatus_F_contig10167.168.1 vs. uniprot
Match: A0A7S2CBN4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CBN4_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 2.100e-9
Identity = 35/68 (51.47%), Postives = 50/68 (73.53%), Query Frame = 1 
Query:    1 GIASSKWVRDCIQGGKYGFALPAVMVLKEILCQRGLNQPWSGGLSSYSLINMMITVLQRAEVERARAR 204
            GIASS++V+  I   +Y  A+P  ++LKE+L  R LN+P+SGGLSSYS++ M+I VLQ   +ER +AR
Sbjct:    5 GIASSRFVKHMIDI-QYPEAVPLTLILKEMLVLRRLNEPFSGGLSSYSVLLMVIVVLQ---IERNQAR 68
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BLAST of mRNA_E-fasciculatus_F_contig10167.168.1 vs. uniprot
Match: F0Y952_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y952_AURAN)

HSP 1 Score: 58.9 bits (141), Expect = 2.310e-8
Identity = 29/63 (46.03%), Postives = 47/63 (74.60%), Query Frame = 1 
Query:    1 GIASSKWVRDCIQGGKYGFALPAVMVLKEILCQRGLNQPWSGGLSSYSLINMMITVLQRAEVE 189
            G+ASS++  + +   ++    P ++VLKE+L QRGLN+P++GGLSSYSL+ +++T L +A VE
Sbjct:  983 GLASSRYALEAMS--RWPELAPLMLVLKELLVQRGLNEPFTGGLSSYSLLLLVMTALLQAGVE 1043
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BLAST of mRNA_E-fasciculatus_F_contig10167.168.1 vs. uniprot
Match: A0A7R9UGE0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UGE0_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 7.900e-8
Identity = 31/63 (49.21%), Postives = 40/63 (63.49%), Query Frame = 1 
Query:    1 GIASSKWVRDCIQGGKYGFALPAVMVLKEILCQRGLNQPWSGGLSSYSLINMMITVLQRAEVE 189
            GIASS +VR  ++      A P  ++LKE+L Q+GLNQ WSGGLSSY+L      VLQ+   E
Sbjct:  358 GIASSIFVRQELKSRHAAAAGPLTIILKEMLAQKGLNQAWSGGLSSYALFLCSRIVLQQLGAE 420
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BLAST of mRNA_E-fasciculatus_F_contig10167.168.1 vs. uniprot
Match: A0A7S0CXX3_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0CXX3_9EUKA)

HSP 1 Score: 55.5 bits (132), Expect = 3.690e-7
Identity = 28/64 (43.75%), Postives = 41/64 (64.06%), Query Frame = 1 
Query:    1 GIASSKWVRDCIQGGKYGFALPAVMVLKEILCQRGLNQPWSGGLSSYSLINMMITVLQRAEVER 192
            G+++  +VR      ++   +P  MVLK+ L  RGLN P+SGGLSSY L+ M+  VLQR  ++R
Sbjct:  244 GLSTCAFVRGLC--AEFPMLVPLTMVLKQFLVTRGLNDPYSGGLSSYGLVLMLTRVLQRDRLQR 305
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10167.168.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G847_ECTSI4.450e-41100.00NTP_transf_2 domain-containing protein n=2 Tax=Ect... [more]
I2CR29_NANGC1.630e-1359.68Poly rna polymerase (Fragment) n=5 Tax=Monodopsida... [more]
A0A835Z4K4_9STRA4.170e-1378.57Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S4A1M6_9STRA8.010e-1147.62Hypothetical protein (Fragment) n=1 Tax=Pelagomona... [more]
A0A7S3Y313_HETAK6.970e-1072.22Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A8J2SRI7_9STRA7.310e-1047.62Hypothetical protein (Fragment) n=1 Tax=Pelagomona... [more]
A0A7S2CBN4_9STRA2.100e-951.47Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
F0Y952_AURAN2.310e-846.03Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7R9UGE0_9STRA7.900e-849.21Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A7S0CXX3_9EUKA3.690e-743.75Hypothetical protein (Fragment) n=1 Tax=Amorphochl... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10167contigE-fasciculatus_F_contig10167:703..1424 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score153.7
Seed ortholog evalue3.5e-35
Seed eggNOG ortholog2880.D7G847
KEGG koko:K03514
KEGG Pathwayko03018,map03018
KEGG ModuleM00393
EggNOG free text desc.RNA uridylyltransferase activity
EggNOG OGsCOG5260@1,KOG1906@2759
EC2.7.7.19
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03016,ko03019
Hectar predicted targeting categoryother localisation
Exons2
Model size228
Cds size228
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927517.5490928-CDS-E-fasciculatus_F_contig10167:702..7891622927517.5490928-CDS-E-fasciculatus_F_contig10167:702..789Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10167 703..789 +
1695995575.59892-CDS-E-fasciculatus_F_contig10167:702..7891695995575.59892-CDS-E-fasciculatus_F_contig10167:702..789Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10167 703..789 +
1622927517.561156-CDS-E-fasciculatus_F_contig10167:1283..14241622927517.561156-CDS-E-fasciculatus_F_contig10167:1283..1424Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10167 1284..1424 +
1695995575.6108923-CDS-E-fasciculatus_F_contig10167:1283..14241695995575.6108923-CDS-E-fasciculatus_F_contig10167:1283..1424Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10167 1284..1424 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10167.168.1prot_E-fasciculatus_F_contig10167.168.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig10167 703..1424 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig10167.168.1

>prot_E-fasciculatus_F_contig10167.168.1 ID=prot_E-fasciculatus_F_contig10167.168.1|Name=mRNA_E-fasciculatus_F_contig10167.168.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=76bp
GIASSKWVRDCIQGGKYGFALPAVMVLKEILCQRGLNQPWSGGLSSYSLI
NMMITVLQRAEVERARARRIVACAQA
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mRNA from alignment at E-fasciculatus_F_contig10167:703..1424+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig10167.168.1 ID=mRNA_E-fasciculatus_F_contig10167.168.1|Name=mRNA_E-fasciculatus_F_contig10167.168.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=722bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10167:703..1424+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGAATCGCGTCTTCCAAGTGGGTACGAGATTGCATCCAGGGCGGCAAGTA
CGGCTTCGCGCTGCCGGCAGTGATGGTGCTCAAAGAGGTCGGTGGTACCC
GATGCCTTCTTGTGTCCTACAGTACAGCAGTCTTACCGTAATGTTACAAT
CGTAGAAAAGGTAATGTGATCACAAGAGACTGCGCGTTTTAGATAACACC
ACAGTTGAAGGGCGAAAATGTCATTTTTGTCTTACATGCGGTAGTTGTTG
TTGACCATGTTCGTTTGTGTCTTACAAGGACAAACGTCGCTCTCTCTCCT
CGTCACCGCTTTTTTCGCGATTGATGAAGCGCGTAGGGTGCCTGCCTATC
GATGTCTTGTTGGGGTGACGCTGCTCTTTTGTTTTTAGTCCTTGCTGCGC
CGCGTATGATGTCGGAAAGTTGGGAGCTTGCGAAGGGCAAGCGTATTGGT
GTATGCAGACGATACCCCATCCCGAGATGAGTACACCCCCCCGTGCCCAC
CGTCACCCCCGACGTGCTCCTCACTTTTTCGCATGATGGCTCCACGCGTC
CCCCGTGTACCCGCTTGGTGTTGTTGTTCAGATCTTGTGCCAGAGAGGGC
TCAACCAGCCGTGGTCGGGAGGCCTCAGCAGCTACTCGCTCATCAACATG
ATGATCACCGTCCTGCAGAGGGCGGAGGTGGAGCGCGCCCGGGCCCGAAG
AATCGTGGCCTGCGCCCAAGCC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10167:703..1424+

>mRNA_E-fasciculatus_F_contig10167.168.1 ID=mRNA_E-fasciculatus_F_contig10167.168.1|Name=mRNA_E-fasciculatus_F_contig10167.168.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=456bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10167:703..1424+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGAATCGCGTCTTCCAAGTGGGTACGAGATTGCATCCAGGGCGGCAAGTA
CGGCTTCGCGCTGCCGGCAGTGATGGTGCTCAAAGAGGGAATCGCGTCTT
CCAAGTGGGTACGAGATTGCATCCAGGGCGGCAAGTACGGCTTCGCGCTG
CCGGCAGTGATGGTGCTCAAAGAGATCTTGTGCCAGAGAGGGCTCAACCA
GCCGTGGTCGGGAGGCCTCAGCAGCTACTCGCTCATCAACATGATGATCA
CCGTCCTGCAGAGGGCGGAGGTGGAGCGCGCCCGGGCCCGAAGAATCGTG
GCCTGCGCCCAAGCCATCTTGTGCCAGAGAGGGCTCAACCAGCCGTGGTC
GGGAGGCCTCAGCAGCTACTCGCTCATCAACATGATGATCACCGTCCTGC
AGAGGGCGGAGGTGGAGCGCGCCCGGGCCCGAAGAATCGTGGCCTGCGCC
CAAGCC
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