mRNA_E-fasciculatus_F_contig10154.157.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig10154.157.1 vs. uniprot
Match: D7FU58_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU58_ECTSI) HSP 1 Score: 140 bits (353), Expect = 6.130e-39 Identity = 84/158 (53.16%), Postives = 95/158 (60.13%), Query Frame = 1 Query: 130 GEAPASGCIGCQGDGTDRATYWLLIWLRTCALANFVMQSAKLVWTIFVVMVRTRLEANRGARP---APALRDNDMEGARANGAEQALVPPPPQQGTENVPD------------------------TALLLTLRPXXPFQGRSISAPERLVSTPVPFTA 522
GEAPASGCI CQGDG D+ATYWLL+WLRTC LANF+ + AKL WT+FV+MVR +LEA R ARP AP L D+D EGA N AE A QGT NVP+ +ALLL LR P RSISAPERL+S P A
Sbjct: 11 GEAPASGCISCQGDGRDQATYWLLMWLRTCILANFLGRCAKLAWTVFVLMVRRQLEAKRRARPGPPAPVLGDDDEEGAPPNVAEPAAPVXXXPQGTGNVPNAAGEAAGTGPEVEPPAVVAAAVSGSALLLGLRLPPPLPRRSISAPERLISRPAVIVA 168
BLAST of mRNA_E-fasciculatus_F_contig10154.157.1 vs. uniprot
Match: D7G971_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G971_ECTSI) HSP 1 Score: 113 bits (283), Expect = 9.210e-29 Identity = 70/131 (53.44%), Postives = 81/131 (61.83%), Query Frame = 1 Query: 202 IWLRTCALANFVMQSAKLVWTIFVVMVRTRLEANRGARP---APALRDNDMEGARANGAE-QALVPPPPQQGTENVPD------------------------TALLLTLRPXXPFQGRSISAPERLVSTPV 510
+WLRTCALANF+ + AKL WT+FV+MVR + EA R A P AP L D+D EGA AN AE +A VPPPP QGTENVP+ +ALLL+L P P RSISAP RLVSTPV
Sbjct: 1 MWLRTCALANFLGRCAKLAWTVFVLMVRRQWEAKRNALPGPPAPVLGDDDEEGAPANVAEPEATVPPPPPQGTENVPNAAGEAAGTGVEVEPSRIVAATVSGSALLLSLVPPPPLSARSISAPARLVSTPV 131
BLAST of mRNA_E-fasciculatus_F_contig10154.157.1 vs. uniprot
Match: D7FU59_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU59_ECTSI) HSP 1 Score: 108 bits (271), Expect = 1.810e-25 Identity = 75/156 (48.08%), Postives = 85/156 (54.49%), Query Frame = 1 Query: 82 SWLFSAAAGTCPAAAAGEAPASGC-IGCQGDGTDRATYWLLIWLRTCALANFVMQSAKLVWTIFVVMVRTRLEANRGARP---APALRDNDMEGARANGAEQALVPPPPQQ----------GTENVPDTALLLTLRPXXPFQGRSISAPERLVSTP 507
SW S AA CP A EAP SG IGCQGD D + L W+ TC LA F+ + AKL W +FV+MVR EA R RP APAL DND+EGA AN E V +AL L+LRP P GRSISAPERL+STP
Sbjct: 155 SWSTSGAAAACPGAV--EAPVSGDNIGCQGDIQDETSLQLFAWMATCLLAYFLGRCAKLGWIMFVLMVRAMWEAKRRERPDPPAPALGDNDVEGAPANLVEPVXXXXXXXXXXXXXXXXXXAASAVFGSALPLSLRPPAPLPGRSISAPERLISTP 308
BLAST of mRNA_E-fasciculatus_F_contig10154.157.1 vs. uniprot
Match: A0A6H5JMJ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMJ1_9PHAE) HSP 1 Score: 101 bits (251), Expect = 6.230e-23 Identity = 77/170 (45.29%), Postives = 89/170 (52.35%), Query Frame = 1 Query: 67 HHHLPSWLFSAAAGTCPAAAAGEAPASGC-IGCQGDGTDRATYWLLIWLRTCALANFVMQSAKLVWTIFVVMVRTRLEANRGAR---PAPALRDNDMEGARANGAEQALVPPPPQQGTEN--------------VPDTALLLTLRPXXPFQGRSISAPERLVSTPVPFTA 522
+H LP W SAAA P A GE P SG I CQGD D A+ LL W+ +C LA F+ + AK W +FV+MVR EA R R PAP +DMEGA AN LV P P V + L L+LRP P GRSISAPERL+S PV TA
Sbjct: 58 YHQLPPWRSSAAAVARPGA--GETPESGGNISCQGDSQDEASLQLLAWMASCLLAYFLWRCAKHGWIMFVLMVRAMWEAKRRERHDPPAPVPGADDMEGAPAN-----LVEPVPGXXXXXXXXXXXXXXXXXAVVLGSDLPLSLRPPNPLPGRSISAPERLISRPVIVTA 220 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10154.157.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 4 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig10154.157.1 >prot_E-fasciculatus_F_contig10154.157.1 ID=prot_E-fasciculatus_F_contig10154.157.1|Name=mRNA_E-fasciculatus_F_contig10154.157.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=177bp LPGNDGRSSHPHGHGRSSEDANHHHLPSWLFSAAAGTCPAAAAGEAPASGback to top mRNA from alignment at E-fasciculatus_F_contig10154:236..2814+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig10154.157.1 ID=mRNA_E-fasciculatus_F_contig10154.157.1|Name=mRNA_E-fasciculatus_F_contig10154.157.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2579bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10154:236..2814+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10154:236..2814+ >mRNA_E-fasciculatus_F_contig10154.157.1 ID=mRNA_E-fasciculatus_F_contig10154.157.1|Name=mRNA_E-fasciculatus_F_contig10154.157.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1062bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10154:236..2814+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |