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Homology
BLAST of mRNA_E-fasciculatus_F_contig10145.149.1 vs. uniprot
Match: D7G3W8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3W8_ECTSI) HSP 1 Score: 204 bits (519), Expect = 8.640e-53 Identity = 144/248 (58.06%), Postives = 160/248 (64.52%), Query Frame = 1
Query: 1387 SEAGGADGQDRRGS------------VASIGTDTGSVFSPSNARSAAASRRGELVRKGSAETLVGSWSGSYGSGSGSVVEVSPRENEESGAPGTPSTPLTVNQPGYPKKDRLLTSKQGKHRPESKQQQDQXXXX----------------------------------QARQRDNRVPKSGIGPPSAKVQPPQQAQTENDGESSRGDECEGEKKGGDADSIRQKERQEKRVLTLPQKLGLGLEWRTRP 1992
S+A GADGQDRRGS VASIGTDTGSV S S SAAA RR E VRKGSAETLVG WSGS +VE GAP TP+TPLT++Q YPK D+L TSKQG+HRPESKQ++D+ XX +A QRDNR PK G+ PP+AKVQ PQQAQT +DGES RG+EC GEKKGGDADSIRQ+ERQEKRVLTLPQKLGL LEWRTRP
Sbjct: 296 SKAEGADGQDRRGSRQGATDSRRSSGVASIGTDTGSVLSRSGTSSAAARRR-EFVRKGSAETLVGRWSGSE-----PIVE---------GAPDTPATPLTLHQAAYPKTDQLQTSKQGQHRPESKQRRDRQAXXXXXXXTNAQSQQGRSQQHTFSTVDSSEGLNSNTPKAWQRDNRAPKRGMWPPAAKVQQPQQAQTGDDGES-RGNECGGEKKGGDADSIRQQERQEKRVLTLPQKLGLELEWRTRP 527
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Ec32 ortholog description | conserved unknown protein |
| Ec32 ortholog | Ec-15_003750.1 |
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Model size | 3205 |
| Cds size | 1200 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig10145.149.1 >prot_E-fasciculatus_F_contig10145.149.1 ID=prot_E-fasciculatus_F_contig10145.149.1|Name=mRNA_E-fasciculatus_F_contig10145.149.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=400bp
MIRETNAWRHENSVIHQEYAEHLASSAKLLAENAALKDQIAVSNREYAKM
AAGGDAQARNLTSKVKHVLGHNEDAPTRGVVAVGRGGGGGSGVGGSSEGG
ATGILNKRHRSPGLRVVSPTADGETPRRRTAQTRGQEDHGQKERLQQLQQ
LQRLRQLLQQDRNKEAKARAVSDASDETLTKFSSASTTAEDEPVDRASEA
GGADGQDRRGSVASIGTDTGSVFSPSNARSAAASRRGELVRKGSAETLVG
SWSGSYGSGSGSVVEVSPRENEESGAPGTPSTPLTVNQPGYPKKDRLLTS
KQGKHRPESKQQQDQQPQPQARQRDNRVPKSGIGPPSAKVQPPQQAQTEN
DGESSRGDECEGEKKGGDADSIRQKERQEKRVLTLPQKLGLGLEWRTRP* back to topmRNA from alignment at E-fasciculatus_F_contig10145:1051..5012+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig10145.149.1 ID=mRNA_E-fasciculatus_F_contig10145.149.1|Name=mRNA_E-fasciculatus_F_contig10145.149.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3962bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10145:1051..5012+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AATTTCCAACCTTCCTAGTTCCGGCTCTGCAGATTCCAAAAAGTAATCCT
CAGCCGCAAATTGCAGTTCCATGGCCTACGGATTTGGACAATTGGAAATT
CAGAAGCAAAACAGCTGCTGTATTGACCGGCCCTTCGTAACCCATACACC
CTTATACCACTCTCGTGGGCTATTCCGGTACCGTATCGCCTGAGGCGGGA
TGTCATGATGATACGGCAGGGTACCGAAATTCCGCTTGTGCCATCTTGGT
ATTTTCTTCGTTCGATTGAATATATCCCCTGGCAGCGCCTGAGGGTGGCT
GTTGACGGAGAACACATAACTAGAACACTTGATACGAATCCGCTAGTGTT
TCGTGTCCATGCTCATCCTAGCATAGAGTTGTTCAAATTTAGGACGTCTC
TTCTGGGATGGGGGTAGGTTGTGGCACACGCAACATGCCTGTCATGTGAC
AAAGGTACGATGACATTAACTTGCGGAGCAGAGTAATGTATTGTTTCCGG
TCAGGGCTAGCCCCACGTGGTGGAACGTCGGAAAAATCGAAACATTCTTG
CCGCAGGTAGCACAGGGTGCAGGTTTGCATCATGATGCGGCTGTGACGGA
ATCAAAGCCTCATATCGAGCTGGCAGCGCCTGTTGTTGGGGTAGAGATCT
CGAAGCTCGTATGTGTTGCATGCAAGCAACACAACTTGACCTGCAACGGA
CTTTGGCAACAAAGAAAACGCGACACATAAATATTCTGGCAACAAAGCAA
CAACAACGATAGCGACGACACGGCCATCGAAACAGGAATGCCGAGATGAT
CCGCGAGACCAACGCCTGGCGCCACGAGAACTCCGTCATCCACCAGGAGT
ACGCCGAGCACCTCGCCAGTAGCGCCAAGCTCCTGGCCGAGAACGCCGCT
CTCAAGGACCAGATCGCCGTGTCCAACCGCGAGTATGCCAAGATGGCCGC
TGGTGGCGACGCCCAGGCCCGGAACCTCACGTCGAAGGTGAAGCACGTCC
TCGGACACAACGAGGATGCCCCCACCCGTGGCGTTGTCGCGGTGGGCAGG
GGCGGAGGCGGTGGGAGTGGTGTTGGTGGTTCCTCCGAAGGAGGCGCTAC
CGGCATCCTGAACAAGCGGCACCGCTCGCCCGGCCTGCGTGTTGTTTCGC
CGACCGCGGACGGGGAGACTCCTCGCCGGCGCACGGCCCAAACCCGCGGG
CAAGAAGATCATGGTCAGAAGGAGCGGCTGCAGCAGCTGCAGCAGCTGCA
GCGGCTGCGGCAGCTGCTTCAGCAGGACCGAAACAAGGAGGCAAAGGCCA
GAGCCGTGAGCGACGCAAGCGACGAGACCTTGACAAAGTTCAGCAGTGCC
AGCACCACCGCTGAAGATGAACCCGTCGATCGAGCATCCGAGGCAGGGGG
GGCCGACGGACAGGACCGGCGCGGCAGCGTAGCCTCGATCGGCACCGACA
CGGGGTCCGTTTTCTCCCCGAGCAACGCTCGCTCAGCCGCTGCCAGCAGG
CGGGGAGAATTAGTCAGGAAGGGAAGCGCGGAGACGTTGGTCGGGAGTTG
GAGCGGCTCCTACGGTTCTGGGAGCGGCTCCGTTGTCGAGGTGCGTGTAT
ACGTTTGTTGGCGCCTTCGGTGGCCGCTGAACCTAGTTTGCGTCTTCTGT
TTTTCGGGGGGTTCCTGTAGGCGGCAGGGGAGTTTCACCCGTTATACCTG
GGTCAGAACGCTTGGACTTGAGAGACAAGGCCTTACGACTGCCGGCGGCG
GTCCAATGTAACGACGACAAGAGCAAAGGGTACAAGGCATGAAAAATGGT
GTTTCAGCGACCTTGGCGGTGTTTGCTAGCCGAAACCCGTCTCGATGGCC
ACTGAGCGAATATCAATGCGGCGTGGAAGAGAGCAGAACAAGTCGATCGA
TCGCGTATTGGGTTGTCGAGGGAGAGGGGAGAATATCAGACGAACTCGAA
ACAGGTCCTTAAGATCCGTCCCGCCCAATCCCTCGTGCCACGTTTCGAAC
GTCCTAGGTCAGCCCCCGCGAGAACGAAGAAAGCGGCGCGCCCGGCACGC
CCTCCACACCGCTCACCGTGAACCAGCCGGGGTACCCGAAGAAAGATCGC
CTGTTGACGAGCAAACAAGGGAAACACCGGCCTGAATCCAAGCAACAGCA
AGATCAGCAGCCCCAGCCCCAGGCGCGGCAGCGGGATAACAGAGTCCCGA
AGAGCGGAATCGGGCCGCCATCGGCCAAGGTCCAGCCGCCGCAGCAAGCG
CAGACGGAAAACGACGGGGAATCCTCCCGCGGAGACGAGTGCGAAGGGGA
GAAGAAAGGGGGCGACGCGGACAGTATCCGGCAGAAAGAGCGCCAGGAGA
AGCGGGTCCTCACGCTCCCTCAGAAGCTGGGGCTCGGGCTGGAGTGGCGC
ACTCGGGTAGGGCTTACCTTTGTTATACTGCGTGTCGGTGGTCCCTCTTA
ATGATACATCCTACCAGAAATAACATTTTCGAGGCCGCTGTGGCCGGGAA
GTTCCAAGACTTTCTCGTGCTTGTGTTTGTGTTTGTCAGCAAGCTCCGGA
CGACGTGTTTCATGGCTGGGTCTTTCCTCGACGGCCGTACAAAAAGCCAC
CGTTGTTGAACTGTAGGTGAGAAGTCGAGATCTGAACGCTTGGACATGGC
TCTATAATCTAACCTCCTTTGCTGGGCTAACGACTAACCCTTCCGAACTT
TTCCCCATGCTTTTTCTGGTTTGTCGCGTACTTGTGACCACCGCAGCCTT
AGCACTATTGGGGGGGCGTCTAAGGCTGCGTATATGCTTCACCATCGCAG
GGACCGTCGGAATCTGGTACAATTTTGGGCTCGTCTACCTAACTGAGCAG
GTTTAGGTTTTGGCCAAGGTGTAGGAATTTGTTTTTTTCTTCACGTTGGT
GGAGCTGGAAACCGGTTCTCTTGTTGAAAGATTCATGTGTGATGGAGTCG
AAAGTGCTGAACATTGGTTCCGAAAGCGCATCCGGTCGACACCCATCAAA
ATGTGATTGGTTGCAGCTCCTTGATTGGTTGAAGATGGAAAACTTACCCG
CTTGTGGGTGTTGGCTGTTTTAATGGGGGAATGAATGGCTGGGGGCGTGG
GTGTGTTCGGTACTTCACTTCATAACTCGGTCACAACACCTACTTGGAGT
AGTATGTATTTGTGCAATCCATCGGTTCAGAGAGGTGCAGCTGAGACGTT
AGCTGCGAACAGATGGCATGCCTTCATGGAGGGCCGAAAACATCAGTCCG
AAGATTGACCGCAATTCATGGGTCTTCTTGCAATCTGGGGCTCGTTCTCG
TTGACGTCACCGTTGTCGTCGTTGGCCTCTCGTCGCTGTATCTGCCACTT
GCACGGCGGTGATGTGGATGCTGATGGGCTTGATCGTTGGCGATGGGCTC
GTTCCTGCCGGTGGGGAGGGCCCAGTTCCGTCCTGCTATTGCGTGCAGGA
AATCGCTGTCTTTGATTCCCGCATTGGCAGGGCTTAGCAGAAGGACGACA
ACTCGCTGCATCAAACGAATCAGACACTTGGTGGCTTAGATCTAGAGGGG
GGTTAATGTGCATAGACCGTGCTGTTGTCGTTATTGTTGTTACCTTCGTT
GTCGTTGTCGTTGTAGTTGGTACCATTGTCTTTATCCCTATCGCTGTTGT
CGCTGCCGTTAATACCCTTGTGTGTGTTCTTGTCTTGATGTTTATCGCTG
TTGCTTCTGCGCTTCCAGCGCATGCACAAGGAAGATTTAGTCTTCAATGC
TGCCCGTTAGTCACACAAGGTGGTAGAGATTTGTTGGAAAACAATGTATT
TGGTGTCAAACCCAAGCCTGCTGGTTTCTGGCACATAAAAATTCGAAGGA
TCGGTGCTGTGGTCCTACATGAAATCGATGGCAAGGTTGCAATCCTGATT
AGTACTGCTGGGGAAGCGATGGGGCTGGGGCATTTCTCTCGGAAACGGAA
CTTTGAACGAGC back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig10145:1051..5012+ >mRNA_E-fasciculatus_F_contig10145.149.1 ID=mRNA_E-fasciculatus_F_contig10145.149.1|Name=mRNA_E-fasciculatus_F_contig10145.149.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2400bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10145:1051..5012+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGATCCGCGAGACCAACGCCTGGCGCCACGAGAACTCCGTCATCCACCA
GGAGTACGCCGAGCACCTCGCCAGTAGCGCCAAGCTCCTGGCCGAGAACG
CCGCTCTCAAGGACCAGATCGCCGTGTCCAACCGCGAGTATGCCAAGATG
GCCGCTGGTGGCGACGCCCAGGCCCGGAACCTCACGTCGAAGGTGAAGCA
CGTCCTCGGACACAACGAGGATGCCCCCACCCGTGGCGTTGTCGCGGTGG
GCAGGGGCGGAGGCGGTGGGAGTGGTGTTGGTGGTTCCTCCGAAGGAGGC
GCTACCGGCATCCTGAACAAGCGGCACCGCTCGCCCGGCCTGCGTGTTGT
TTCGCCGACCGCGGACGGGGAGACTCCTCGCCGGCGCACGGCCCAAACCC
GCGGGCAAGAAGATCATGGTCAGAAGGAGCGGCTGCAGCAGCTGCAGCAG
CTGCAGCGGCTGCGGCAGCTGCTTCAGCAGGACCGAAACAAGGAGGCAAA
GGCCAGAGCCGTGAGCGACGCAAGCGACGAGACCTTGACAAAGTTCAGCA
GTGCCAGCACCACCGCTGAAGATGAACCCGTCGATCGAGCATCCGAGGCA
GGGGGGGCCGACGGACAGGACCGGCGCGGCAGCGTAGCCTCGATCGGCAC
CGACACGGGGTCCGTTTTCTCCCCGAGCAACGCTCGCTCAGCCGCTGCCA
GCAGGCGGGGAGAATTAGTCAGGAAGGGAAGCGCGGAGACGTTGGTCGGG
AGTTGGAGCGGCTCCTACGGTTCTGGGAGCGGCTCCGTTGTCGAGATGAT
CCGCGAGACCAACGCCTGGCGCCACGAGAACTCCGTCATCCACCAGGAGT
ACGCCGAGCACCTCGCCAGTAGCGCCAAGCTCCTGGCCGAGAACGCCGCT
CTCAAGGACCAGATCGCCGTGTCCAACCGCGAGTATGCCAAGATGGCCGC
TGGTGGCGACGCCCAGGCCCGGAACCTCACGTCGAAGGTGAAGCACGTCC
TCGGACACAACGAGGATGCCCCCACCCGTGGCGTTGTCGCGGTGGGCAGG
GGCGGAGGCGGTGGGAGTGGTGTTGGTGGTTCCTCCGAAGGAGGCGCTAC
CGGCATCCTGAACAAGCGGCACCGCTCGCCCGGCCTGCGTGTTGTTTCGC
CGACCGCGGACGGGGAGACTCCTCGCCGGCGCACGGCCCAAACCCGCGGG
CAAGAAGATCATGGTCAGAAGGAGCGGCTGCAGCAGCTGCAGCAGCTGCA
GCGGCTGCGGCAGCTGCTTCAGCAGGACCGAAACAAGGAGGCAAAGGCCA
GAGCCGTGAGCGACGCAAGCGACGAGACCTTGACAAAGTTCAGCAGTGCC
AGCACCACCGCTGAAGATGAACCCGTCGATCGAGCATCCGAGGCAGGGGG
GGCCGACGGACAGGACCGGCGCGGCAGCGTAGCCTCGATCGGCACCGACA
CGGGGTCCGTTTTCTCCCCGAGCAACGCTCGCTCAGCCGCTGCCAGCAGG
CGGGGAGAATTAGTCAGGAAGGGAAGCGCGGAGACGTTGGTCGGGAGTTG
GAGCGGCTCCTACGGTTCTGGGAGCGGCTCCGTTGTCGAGGTCAGCCCCC
GCGAGAACGAAGAAAGCGGCGCGCCCGGCACGCCCTCCACACCGCTCACC
GTGAACCAGCCGGGGTACCCGAAGAAAGATCGCCTGTTGACGAGCAAACA
AGGGAAACACCGGCCTGAATCCAAGCAACAGCAAGATCAGCAGCCCCAGC
CCCAGGCGCGGCAGCGGGATAACAGAGTCCCGAAGAGCGGAATCGGGCCG
CCATCGGCCAAGGTCCAGCCGCCGCAGCAAGCGCAGACGGAAAACGACGG
GGAATCCTCCCGCGGAGACGAGTGCGAAGGGGAGAAGAAAGGGGGCGACG
CGGACAGTATCCGGCAGAAAGAGCGCCAGGAGAAGCGGGTCCTCACGCTC
CCTCAGAAGCTGGGGCTCGGGCTGGAGTGGCGCACTCGGGTCAGCCCCCG
CGAGAACGAAGAAAGCGGCGCGCCCGGCACGCCCTCCACACCGCTCACCG
TGAACCAGCCGGGGTACCCGAAGAAAGATCGCCTGTTGACGAGCAAACAA
GGGAAACACCGGCCTGAATCCAAGCAACAGCAAGATCAGCAGCCCCAGCC
CCAGGCGCGGCAGCGGGATAACAGAGTCCCGAAGAGCGGAATCGGGCCGC
CATCGGCCAAGGTCCAGCCGCCGCAGCAAGCGCAGACGGAAAACGACGGG
GAATCCTCCCGCGGAGACGAGTGCGAAGGGGAGAAGAAAGGGGGCGACGC
GGACAGTATCCGGCAGAAAGAGCGCCAGGAGAAGCGGGTCCTCACGCTCC
CTCAGAAGCTGGGGCTCGGGCTGGAGTGGCGCACTCGGCCTTAGCCTTAG back to top
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