mRNA_E-fasciculatus_F_contig10143.147.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig10143.147.1
Unique NamemRNA_E-fasciculatus_F_contig10143.147.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig10143.147.1 vs. uniprot
Match: D7G1I1_ECTSI (Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2879 RepID=D7G1I1_ECTSI)

HSP 1 Score: 291 bits (746), Expect = 7.260e-98
Identity = 140/156 (89.74%), Postives = 147/156 (94.23%), Query Frame = 1 
Query:    1 HGTVLFVSAVHKPDLSAEARTNAVRPTERLGARGRFTPGARRWGGGEPRDVPLPRLRDPGTIIFESDSERSRPSLFFSGETNVSGGREDERHGRLGSFEHGIVEARGGPLQVQAAFASGVELLWHEGGQKENKYRRCGPSHFVAGVSILSGGMPVY 468
            HG VLFVSAVHKPDLSAEARTNA+RP ERLG+RGRFT G R W GG+PRDVPLPRLRDPGT++FES SERSRPS+ FSGETNVSGGREDERHGRLGSFEHG+VEARGGPLQVQAAFAS VELLWHEGGQKENKYRRCGPSHFVAGVSILSGGMPVY
Sbjct:  113 HGKVLFVSAVHKPDLSAEARTNAIRPKERLGSRGRFTAGVRGWVGGKPRDVPLPRLRDPGTVLFESASERSRPSMSFSGETNVSGGREDERHGRLGSFEHGVVEARGGPLQVQAAFASEVELLWHEGGQKENKYRRCGPSHFVAGVSILSGGMPVY 268
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BLAST of mRNA_E-fasciculatus_F_contig10143.147.1 vs. uniprot
Match: A0A6H5KBU2_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU2_9PHAE)

HSP 1 Score: 288 bits (737), Expect = 2.380e-97
Identity = 139/156 (89.10%), Postives = 145/156 (92.95%), Query Frame = 1 
Query:    1 HGTVLFVSAVHKPDLSAEARTNAVRPTERLGARGRFTPGARRWGGGEPRDVPLPRLRDPGTIIFESDSERSRPSLFFSGETNVSGGREDERHGRLGSFEHGIVEARGGPLQVQAAFASGVELLWHEGGQKENKYRRCGPSHFVAGVSILSGGMPVY 468
            HG VLFVSAVHKPDLSAEARTNAVRPTERLG+RGRFT G RRW GGEPRDVPLPR+ DPGT++FES SERSRPSL FS ETNVSGGR+DERHGRLGSFEHG+VEARGGPLQVQAAFA  VE LWHEGGQKENKYRRCGPSHFVAGVSILSGGMPVY
Sbjct:   55 HGKVLFVSAVHKPDLSAEARTNAVRPTERLGSRGRFTAGVRRWAGGEPRDVPLPRVCDPGTVLFESASERSRPSLSFSRETNVSGGRQDERHGRLGSFEHGVVEARGGPLQVQAAFARDVEQLWHEGGQKENKYRRCGPSHFVAGVSILSGGMPVY 210
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BLAST of mRNA_E-fasciculatus_F_contig10143.147.1 vs. uniprot
Match: D7FZE3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZE3_ECTSI)

HSP 1 Score: 293 bits (750), Expect = 1.110e-94
Identity = 141/156 (90.38%), Postives = 146/156 (93.59%), Query Frame = 1 
Query:    1 HGTVLFVSAVHKPDLSAEARTNAVRPTERLGARGRFTPGARRWGGGEPRDVPLPRLRDPGTIIFESDSERSRPSLFFSGETNVSGGREDERHGRLGSFEHGIVEARGGPLQVQAAFASGVELLWHEGGQKENKYRRCGPSHFVAGVSILSGGMPVY 468
            HG VL VSAVHKPDLSAEAR NA RPTERLG+RGRFT G RRWGGGEPRDVPLPR+RDPGT++FES SERSRPSL FSGETNVSGGREDERHGRLGSFEHG+VEARGGPLQVQAAFAS VE LWHEGGQKENKYRRCGPSHFVAGVSILSGGMPVY
Sbjct:  402 HGKVLLVSAVHKPDLSAEARINATRPTERLGSRGRFTAGVRRWGGGEPRDVPLPRVRDPGTVLFESASERSRPSLSFSGETNVSGGREDERHGRLGSFEHGVVEARGGPLQVQAAFASEVEQLWHEGGQKENKYRRCGPSHFVAGVSILSGGMPVY 557
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BLAST of mRNA_E-fasciculatus_F_contig10143.147.1 vs. uniprot
Match: A0A6H5KZP0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZP0_9PHAE)

HSP 1 Score: 185 bits (470), Expect = 1.390e-56
Identity = 93/132 (70.45%), Postives = 103/132 (78.03%), Query Frame = 1 
Query:   67 AVRPTERLGARGRFTPGARRWGGGEPRDVPLPRLRDPGTIIFESDSERSRPSLFFSGETNVSGGREDERHGRLGSFEHGIVEARGGPLQVQAAFASGVELLWHEGGQKENKYRRCGPSHFVAGVSILSGGMP 462
            A+RPTERLG+RGRFT G R W GG+P DV LPR+RDPGT++FES SERSRPSL FSGETNVSGG+EDE              ARGGPLQVQAAF S VELLW EGGQ+E+KYRRCGPSH+V GVSI  G MP
Sbjct:  103 AIRPTERLGSRGRFTSGIRGWAGGKPPDVTLPRVRDPGTVLFESASERSRPSLSFSGETNVSGGKEDE--------------ARGGPLQVQAAFTSEVELLWREGGQREHKYRRCGPSHYVTGVSIPFGDMP 220
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BLAST of mRNA_E-fasciculatus_F_contig10143.147.1 vs. uniprot
Match: A0A6H5KAW1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAW1_9PHAE)

HSP 1 Score: 135 bits (339), Expect = 5.950e-37
Identity = 65/75 (86.67%), Postives = 69/75 (92.00%), Query Frame = 1 
Query:    1 HGTVLFVSAVHKPDLSAEARTNAVRPTERLGARGRFTPGARRWGGGEPRDVPLPRLRDPGTIIFESDSERSRPSL 225
            HG VLFVSAVHKPDLSAEARTNAVRPTERLG+RGRFT G RRW GGEPRDVPLPR+ DPGT++FES SERSRPSL
Sbjct:  131 HGKVLFVSAVHKPDLSAEARTNAVRPTERLGSRGRFTAGVRRWAGGEPRDVPLPRVCDPGTVLFESASERSRPSL 205
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BLAST of mRNA_E-fasciculatus_F_contig10143.147.1 vs. uniprot
Match: A0A836CPV2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPV2_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 1.410e-22
Identity = 68/159 (42.77%), Postives = 85/159 (53.46%), Query Frame = 1 
Query:    1 HGTVLFVSAVHKPDLSAEARTNAV--RPTERLGARGRFTPGARRWGGGEPRDVPLPR-LRDPGTIIFESDSERSRPSLFFSGETNVSGGREDERHGRLGSFEHGIVEARGGPLQVQAAFASGVELLWHEGGQKENKYRRCGPSHFVAGVSILSGGMPVY 468
            HGT+L      +PDLS E RTNA   R TERLGARG FTPG     GG  RDVP+P  + + GT++F   +     +   +    +  G  DER GR GSFEHG    R  P    AA       LW E GQ+    RR    H++AG S+++GG PVY
Sbjct:  106 HGTILATFPHLRPDLSYEGRTNAAGGRATERLGARGSFTPGRAIRAGGPARDVPVPAPILNRGTVLFTLATLACDAAAAAA--PALKPGTTDERVGRAGSFEHGDAHLRM-PTAADAA-------LWREDGQRGG--RRYAGGHWLAGASVMAGGAPVY 252
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10143.147.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7G1I1_ECTSI7.260e-9889.74Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2... [more]
A0A6H5KBU2_9PHAE2.380e-9789.10Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
D7FZE3_ECTSI1.110e-9490.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KZP0_9PHAE1.390e-5670.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAW1_9PHAE5.950e-3786.67Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A836CPV2_9STRA1.410e-2242.77Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10143contigE-fasciculatus_F_contig10143:1..471 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size471
Cds size471
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927515.4924057-CDS-E-fasciculatus_F_contig10143:0..4711622927515.4924057-CDS-E-fasciculatus_F_contig10143:0..471Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10143 1..471 +
1695995574.2075758-CDS-E-fasciculatus_F_contig10143:0..4711695995574.2075758-CDS-E-fasciculatus_F_contig10143:0..471Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10143 1..471 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10143.147.1prot_E-fasciculatus_F_contig10143.147.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig10143 1..471 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig10143.147.1

>prot_E-fasciculatus_F_contig10143.147.1 ID=prot_E-fasciculatus_F_contig10143.147.1|Name=mRNA_E-fasciculatus_F_contig10143.147.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=157bp
HGTVLFVSAVHKPDLSAEARTNAVRPTERLGARGRFTPGARRWGGGEPRD
VPLPRLRDPGTIIFESDSERSRPSLFFSGETNVSGGREDERHGRLGSFEH
GIVEARGGPLQVQAAFASGVELLWHEGGQKENKYRRCGPSHFVAGVSILS
GGMPVY*
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mRNA from alignment at E-fasciculatus_F_contig10143:1..471+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig10143.147.1 ID=mRNA_E-fasciculatus_F_contig10143.147.1|Name=mRNA_E-fasciculatus_F_contig10143.147.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=471bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10143:1..471+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CACGGCACGGTGCTCTTCGTGTCCGCCGTCCACAAGCCGGACCTCTCCGC
TGAGGCCCGCACCAACGCCGTCCGTCCCACGGAGCGCCTCGGAGCCCGGG
GCCGCTTCACGCCGGGGGCGCGTCGCTGGGGCGGTGGCGAGCCTCGTGAC
GTGCCGCTCCCGCGCTTGCGCGACCCGGGTACCATCATCTTCGAGTCCGA
CTCGGAACGCAGCAGGCCCTCCTTGTTCTTCTCGGGCGAGACCAACGTGT
CCGGAGGCAGGGAGGACGAGCGCCACGGGCGGCTGGGATCGTTCGAGCAC
GGGATCGTCGAGGCTCGGGGAGGGCCGCTGCAGGTCCAGGCGGCCTTCGC
GAGCGGGGTGGAGCTGCTGTGGCACGAGGGCGGACAGAAGGAGAACAAGT
ACCGCCGCTGCGGGCCCAGCCACTTCGTCGCCGGCGTGTCCATCCTCTCT
GGCGGCATGCCGGTCTACTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10143:1..471+

>mRNA_E-fasciculatus_F_contig10143.147.1 ID=mRNA_E-fasciculatus_F_contig10143.147.1|Name=mRNA_E-fasciculatus_F_contig10143.147.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=942bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10143:1..471+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CACGGCACGGTGCTCTTCGTGTCCGCCGTCCACAAGCCGGACCTCTCCGC
TGAGGCCCGCACCAACGCCGTCCGTCCCACGGAGCGCCTCGGAGCCCGGG
GCCGCTTCACGCCGGGGGCGCGTCGCTGGGGCGGTGGCGAGCCTCGTGAC
GTGCCGCTCCCGCGCTTGCGCGACCCGGGTACCATCATCTTCGAGTCCGA
CTCGGAACGCAGCAGGCCCTCCTTGTTCTTCTCGGGCGAGACCAACGTGT
CCGGAGGCAGGGAGGACGAGCGCCACGGGCGGCTGGGATCGTTCGAGCAC
GGGATCGTCGAGGCTCGGGGAGGGCCGCTGCAGGTCCAGGCGGCCTTCGC
GAGCGGGGTGGAGCTGCTGTGGCACGAGGGCGGACAGAAGGAGAACAAGT
ACCGCCGCTGCGGGCCCAGCCACTTCGTCGCCGGCGTGTCCATCCTCTCT
GGCGGCATGCCGGTCTACTGACACGGCACGGTGCTCTTCGTGTCCGCCGT
CCACAAGCCGGACCTCTCCGCTGAGGCCCGCACCAACGCCGTCCGTCCCA
CGGAGCGCCTCGGAGCCCGGGGCCGCTTCACGCCGGGGGCGCGTCGCTGG
GGCGGTGGCGAGCCTCGTGACGTGCCGCTCCCGCGCTTGCGCGACCCGGG
TACCATCATCTTCGAGTCCGACTCGGAACGCAGCAGGCCCTCCTTGTTCT
TCTCGGGCGAGACCAACGTGTCCGGAGGCAGGGAGGACGAGCGCCACGGG
CGGCTGGGATCGTTCGAGCACGGGATCGTCGAGGCTCGGGGAGGGCCGCT
GCAGGTCCAGGCGGCCTTCGCGAGCGGGGTGGAGCTGCTGTGGCACGAGG
GCGGACAGAAGGAGAACAAGTACCGCCGCTGCGGGCCCAGCCACTTCGTC
GCCGGCGTGTCCATCCTCTCTGGCGGCATGCCGGTCTACTGA
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