mRNA_E-fasciculatus_F_contig10142.145.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig10142.145.1 vs. uniprot
Match: D8LIC1_ECTSI (CCT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIC1_ECTSI) HSP 1 Score: 134 bits (337), Expect = 3.120e-35 Identity = 100/142 (70.42%), Postives = 106/142 (74.65%), Query Frame = 3 Query: 3 KMNNAAGGIGNYSSSEADXXXXXXXXXXXXXXXXXXINNGNSSRGVVDGHEGDIADNVDGFLDEFMALAGGSNDDDYGMMLEEGAGGGAPDISAEDLVFLADMDLADFLPPPLAAEGGGGALLYPSSGHEIEALPSQGGGAS 428
K NNA GGI N S EA XXXXXXXXXXXXXXXX + VV+GHEGDIADNVDGFLDEFMALAGG ND+DYGMMLE P IS EDLVFLADMDLADFLPP AE GG ALL PSS HE+E +PS+GGG S
Sbjct: 36 KANNAGGGIANKYSIEAGXXXXXXXXXXXXXXXXPGKGSSGGRDVVVNGHEGDIADNVDGFLDEFMALAGG-NDEDYGMMLEXXXXX-XPAISEEDLVFLADMDLADFLPPATTAEDGG-ALLSPSSVHEMETVPSEGGGVS 174
BLAST of mRNA_E-fasciculatus_F_contig10142.145.1 vs. uniprot
Match: A0A6H5KKD0_9PHAE (CCT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKD0_9PHAE) HSP 1 Score: 114 bits (284), Expect = 1.860e-27 Identity = 66/95 (69.47%), Postives = 72/95 (75.79%), Query Frame = 3 Query: 138 VVDGHEGDIADNVDGFLDEFMALAGGSND-DDYGMMLEEGAGGGAPDISAEDLVFLADMDLADFLPPPLAAEGGGGALLYPSSGHEIEALPSQGG 419
VV GH+GDIADNVDGFLDEFM LAGG++D +DYGM P IS EDLVFLADMDLADFLPP + AE G ALL PSS HE+E LPSQGG
Sbjct: 78 VVGGHDGDIADNVDGFLDEFMVLAGGNDDGNDYGMXXXXXXXX-XPAISEEDLVFLADMDLADFLPPAITAEEGD-ALLSPSSVHEMETLPSQGG 170
BLAST of mRNA_E-fasciculatus_F_contig10142.145.1 vs. uniprot
Match: D7G0D0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0D0_ECTSI) HSP 1 Score: 105 bits (263), Expect = 7.710e-26 Identity = 64/95 (67.37%), Postives = 66/95 (69.47%), Query Frame = 3 Query: 153 EGDIADNVDGFLDEFMALAGGSNDDDYG--MMLEEGA-GGGAPDISAEDLVFLADMDLADFLP-------PPLAAEGGGGALLYPSSGHEIEALP 407
EGDIADNVDGFLDEF+ALAG DDDYG MMLEEG GGG IS EDL +LADMDLADFLP P GGGA L PSS HEIE LP
Sbjct: 97 EGDIADNVDGFLDEFIALAG---DDDYGDSMMLEEGCEGGGGAAISEEDLAYLADMDLADFLPAGAAEGAPEAGTSAGGGAPLSPSSAHEIETLP 188
BLAST of mRNA_E-fasciculatus_F_contig10142.145.1 vs. uniprot
Match: A0A6H5KZS0_9PHAE (CCT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZS0_9PHAE) HSP 1 Score: 87.8 bits (216), Expect = 1.240e-17 Identity = 60/95 (63.16%), Postives = 63/95 (66.32%), Query Frame = 3 Query: 153 EGDIADNVDGFLDEFMALAGGSNDDDYG--MMLEEGAGG-GAPDISAEDLVFLADMDLADFLPPPLA---AEGGGG----ALLYPSSGHEIEALP 407
EGDIADNVDGFLDEF+ALAG DDDYG MMLEEG G G IS E L +LADMDLADFLP A + G G A PSS HEIE LP
Sbjct: 94 EGDIADNVDGFLDEFIALAG---DDDYGDSMMLEEGCEGEGGAAISEEGLAYLADMDLADFLPAGSAKGASNAGTGXXXXAPRSPSSDHEIEILP 185 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10142.145.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 4 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig10142.145.1 >prot_E-fasciculatus_F_contig10142.145.1 ID=prot_E-fasciculatus_F_contig10142.145.1|Name=mRNA_E-fasciculatus_F_contig10142.145.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=141bp MNNAAGGIGNYSSSEADGGGSAAAAAAAAPAKSSSINNGNSSRGVVDGHEback to top mRNA from alignment at E-fasciculatus_F_contig10142:1643..2070+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig10142.145.1 ID=mRNA_E-fasciculatus_F_contig10142.145.1|Name=mRNA_E-fasciculatus_F_contig10142.145.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=428bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10142:1643..2070+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10142:1643..2070+ >mRNA_E-fasciculatus_F_contig10142.145.1 ID=mRNA_E-fasciculatus_F_contig10142.145.1|Name=mRNA_E-fasciculatus_F_contig10142.145.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=846bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10142:1643..2070+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |