mRNA_E-fasciculatus_F_contig10132.138.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig10132.138.1 vs. uniprot
Match: A0A6H5KL96_9PHAE (Thioredoxin domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL96_9PHAE) HSP 1 Score: 301 bits (770), Expect = 6.020e-99 Identity = 152/156 (97.44%), Postives = 155/156 (99.36%), Query Frame = 1 Query: 1 QRVSSSALRMVSVGQAAPDFKLNNQNGKPVALSSFKNKKKVVVFFYPKDSTPGCTKEAQTFQSDLAKFKKAGAEVIGISSDADHTEFVKENNLSMTLLSDIGGKVRKAWKVKGAVFGTIDGRVTYVLDKNGVVTSMYDNLLDGAAHSKEALKALEA 468
QRVSS+ALRMVSVGQAAPDFKLNNQNGKPV LSSFKNKKKVVVFFYPKDSTPGCTKEAQTFQSDLAKFKKAGAEVIGISSDADHTEFVKENNLSMTLLSDIGGKVRKAWKVKGAVFGTIDGRVTYVLDKNG+VTSMYDNLLDGAAHSKEALKALE+
Sbjct: 37 QRVSSTALRMVSVGQAAPDFKLNNQNGKPVTLSSFKNKKKVVVFFYPKDSTPGCTKEAQTFQSDLAKFKKAGAEVIGISSDADHTEFVKENNLSMTLLSDIGGKVRKAWKVKGAVFGTIDGRVTYVLDKNGIVTSMYDNLLDGAAHSKEALKALES 192
BLAST of mRNA_E-fasciculatus_F_contig10132.138.1 vs. uniprot
Match: D8LJF6_ECTSI (Thioredoxin domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJF6_ECTSI) HSP 1 Score: 290 bits (742), Expect = 2.230e-95 Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 1 Query: 28 MVSVGQAAPDFKLNNQNGKPVALSSFKNKKKVVVFFYPKDSTPGCTKEAQTFQSDLAKFKKAGAEVIGISSDADHTEFVKENNLSMTLLSDIGGKVRKAWKVKGAVFGTIDGRVTYVLDKNGVVTSMYDNLLDGAAHSKEALKALEA 468
MVSVGQAAPDFKLNNQNGKPVALSSFKNKKKVVVFFYPKDSTPGCTKEAQTFQSDLAKFKKAGAEVIGISSDADHTEFVKENNLSMTLLSDIGGKVRKAWKVKGAVFGTIDGRVTYVLDKNGVVTSMYDNLLDGAAHSKEALKALEA
Sbjct: 1 MVSVGQAAPDFKLNNQNGKPVALSSFKNKKKVVVFFYPKDSTPGCTKEAQTFQSDLAKFKKAGAEVIGISSDADHTEFVKENNLSMTLLSDIGGKVRKAWKVKGAVFGTIDGRVTYVLDKNGVVTSMYDNLLDGAAHSKEALKALEA 147
BLAST of mRNA_E-fasciculatus_F_contig10132.138.1 vs. uniprot
Match: A0A0G4FWI1_VITBC (Thioredoxin domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4FWI1_VITBC) HSP 1 Score: 194 bits (492), Expect = 5.400e-57 Identity = 95/147 (64.63%), Postives = 113/147 (76.87%), Query Frame = 1 Query: 22 LRMVSVGQAAPDFKLNNQNGKPVALSSFKNKKKVVVFFYPKDSTPGCTKEAQTFQSDLAKFKKAGAEVIGISSDADHTEFVKENNLSMTLLSDIGGKVRKAWKVKGAVFGTIDGRVTYVLDKNGVVTSMYDNLLDGAAHSKEALKAL 462
L MV VG+ APDF L +Q+GK V LSSFKNKK VVVFFYP D TPGCTK+AQ F + L FKK GAEVIG+SSDADH+EF+ L MTLLSDIGG+VRK W+V GA+FG + GRVTYV+ K+G+V +YDNLLD +H +A AL
Sbjct: 48 LSMVKVGEMAPDFSLKDQSGKVVKLSSFKNKKSVVVFFYPADMTPGCTKQAQAFNTALDDFKKLGAEVIGVSSDADHSEFISAYGLKMTLLSDIGGEVRKQWQVPGAMFGALPGRVTYVIGKDGIVKKVYDNLLDSESHIPQARAAL 194
BLAST of mRNA_E-fasciculatus_F_contig10132.138.1 vs. uniprot
Match: A0A7S2V5C5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5C5_9STRA) HSP 1 Score: 177 bits (449), Expect = 1.420e-50 Identity = 90/151 (59.60%), Postives = 113/151 (74.83%), Query Frame = 1 Query: 13 SSALRMVSVGQAAPDFKLNNQNGKPVALSSFKNKKKVVVFFYPKDSTPGCTKEAQTFQSDLAKFKKAGAEVIGISSDADHTEFVKENNLSMTLLSDIGGKVRKAWKVKGAVFGTIDGRVTYVLDKNGVVTSMYDNLLDGAAHS---KEALK 456
SS L MVS GQAAP F L +Q+G + L+S+K KK VV+FFYPKD TPGCTKEAQ F ++L +F+K GAEVIGISSDADH+ FV++ L M LLSDI G VRK +KV ++FG +DGRVTYV+ K+G+V +YDN + +H KEALK
Sbjct: 44 SSTLSMVSEGQAAPSFSLKDQSGSTITLASYKGKKDVVLFFYPKDDTPGCTKEAQAFNANLDEFQKMGAEVIGISSDADHSAFVEKYGLKMKLLSDINGAVRKQFKVPSSLFGALDGRVTYVIGKDGIVKKIYDNQFNPESHIDVVKEALK 194
BLAST of mRNA_E-fasciculatus_F_contig10132.138.1 vs. uniprot
Match: A0A0G4GTF6_9ALVE (Thioredoxin domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4GTF6_9ALVE) HSP 1 Score: 171 bits (434), Expect = 1.730e-48 Identity = 82/149 (55.03%), Postives = 108/149 (72.48%), Query Frame = 1 Query: 16 SALRMVSVGQAAPDFKLNNQNGKPVALSSFKNKKKVVVFFYPKDSTPGCTKEAQTFQSDLAKFKKAGAEVIGISSDADHTEFVKENNLSMTLLSDIGGKVRKAWKVKGAVFGTIDGRVTYVLDKNGVVTSMYDNLLDGAAHSKEALKAL 462
S L MV+VG APDFKL +QNG+ V+LSSFK KK VV+FFYPKD TPGCT E F +F K A+++G+SSD DHTEFV + +TLLSD+GG VR+ +KV A+ G +DGRVTY++ K+G V S+Y+N+++ A H +EA K L
Sbjct: 33 SHLSMVNVGDVAPDFKLTDQNGQSVSLSSFKGKKDVVLFFYPKDDTPGCTAECDLFDKAADEFSKLNAKILGVSSDEDHTEFVSKYGFQLTLLSDVGGNVRQTYKVPKAMMGFLDGRVTYIIGKDGKVKSVYENMMEPAKHVEEARKVL 181
BLAST of mRNA_E-fasciculatus_F_contig10132.138.1 vs. uniprot
Match: A0A835Z8Y3_9STRA (Thioredoxin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8Y3_9STRA) HSP 1 Score: 167 bits (424), Expect = 4.020e-47 Identity = 84/153 (54.90%), Postives = 110/153 (71.90%), Query Frame = 1 Query: 4 RVSSSALRMVSVGQAAPDFKLNNQNGKPVALSSFKNKKKVVVFFYPKDSTPGCTKEAQTFQSDLAKFKKAGAEVIGISSDADHTEFVKENNLSMTLLSDIGGKVRKAWKVKGAVFGTIDGRVTYVLDKNGVVTSMYDNLLDGAAH---SKEAL 453
R +++LRMV G +APDF L + GK V+LSSFK KK VV+FF+PK TPGCTKEA F ++L F KAG E+IGISSDA+ F + NL MTLL+D GG VRK + V ++FG +DGRVTYV+ K+G+V ++DNL+D +H SK+AL
Sbjct: 21 RSGAASLRMVKAGDSAPDFTLKDSAGKSVSLSSFKGKKNVVLFFFPKSDTPGCTKEACAFNAELPVFAKAGTEIIGISSDAEQAAFKAKYNLGMTLLADAGGAVRKLYNVPRSMFGALDGRVTYVIGKDGIVKKVHDNLIDAESHVSISKQAL 173
BLAST of mRNA_E-fasciculatus_F_contig10132.138.1 vs. uniprot
Match: W7TJV0_9STRA (Peroxiredoxin q n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TJV0_9STRA) HSP 1 Score: 167 bits (424), Expect = 4.690e-47 Identity = 83/151 (54.97%), Postives = 106/151 (70.20%), Query Frame = 1 Query: 10 SSSALRMVSVGQAAPDFKLNNQNGKPVALSSFKNKKKVVVFFYPKDSTPGCTKEAQTFQSDLAKFKKAGAEVIGISSDADHTEFVKENNLSMTLLSDIGGKVRKAWKVKGAVFGTIDGRVTYVLDKNGVVTSMYDNLLDGAAHSKEALKAL 462
S + M+ VG AAPDF L +QN K V LS+FK KK+VV+FFYPKD TPGCTKEA+ F + L FKK GAEV GISSD DHT FV + L M LLSD+GG RKA++V ++FG +DGRVTYV+ K+ + +YDN +H +++L L
Sbjct: 29 SRGVMNMLKVGDAAPDFALKDQNNKVVKLSTFKGKKEVVLFFYPKDDTPGCTKEAKAFSAALGDFKKKGAEVFGISSDEDHTAFVDKYGLQMQLLSDVGGATRKAYQVPSSLFGALDGRVTYVIGKDQKIRLIYDNQFAPESHVEKSLGTL 179
BLAST of mRNA_E-fasciculatus_F_contig10132.138.1 vs. uniprot
Match: UPI00053C8BA3 (peroxiredoxin Q, chloroplastic n=1 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053C8BA3) HSP 1 Score: 162 bits (410), Expect = 1.670e-44 Identity = 88/156 (56.41%), Postives = 102/156 (65.38%), Query Frame = 1 Query: 7 VSSSALRMVSVGQAAPDFKLNNQNGKPVALSSFKNKKKVVVFFYPKDSTPGCTKEAQTFQSDLAKFKKAGAEVIGISSD--ADHTEFVKENNLSMTLLSDIGGKVRKAWKVKGAVFGTIDGRVTYVLDKNGVVTSMYDNLLDGAAHSKEALKALEA 468
V SS L VS GQ APDF L +QNGKPV+L F+ K VVV+FYP D TPGCTK+A F+ KFKKAGAEVIGIS D A H F + L TLLSD G KVRK W + G FG++ GR TYVLDKNGVV +Y+N H E LK L++
Sbjct: 61 VKSSILAKVSQGQVAPDFTLKDQNGKPVSLKKFRGKP-VVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDTASHKAFASKYKLPYTLLSDEGNKVRKGWGIPGDFFGSLPGRQTYVLDKNGVVQLIYNNQFQPEKHIDETLKFLKS 215
BLAST of mRNA_E-fasciculatus_F_contig10132.138.1 vs. uniprot
Match: V4M097_EUTSA (Thioredoxin-dependent peroxiredoxin n=6 Tax=Brassicaceae TaxID=3700 RepID=V4M097_EUTSA) HSP 1 Score: 159 bits (401), Expect = 3.480e-43 Identity = 86/156 (55.13%), Postives = 103/156 (66.03%), Query Frame = 1 Query: 7 VSSSALRMVSVGQAAPDFKLNNQNGKPVALSSFKNKKKVVVFFYPKDSTPGCTKEAQTFQSDLAKFKKAGAEVIGISSD--ADHTEFVKENNLSMTLLSDIGGKVRKAWKVKGAVFGTIDGRVTYVLDKNGVVTSMYDNLLDGAAHSKEALKALEA 468
+ SS V+ GQAAPDF L +QNGKPV+L FK K VV++FYP D +PGCTK+A +F+ KFKKAGAEVIGIS D A H F + L TLLSD G KVRK W V G +FG + GR TYVLDKNGVV +Y+N H E L+ L+A
Sbjct: 60 LKSSIFAKVNKGQAAPDFTLKDQNGKPVSLKKFKGKP-VVLYFYPADDSPGCTKQACSFRDSYEKFKKAGAEVIGISGDDSASHKAFASKYKLPYTLLSDEGNKVRKDWGVPGDLFGALPGRQTYVLDKNGVVQLIYNNQFQPEKHIDETLRFLKA 214
BLAST of mRNA_E-fasciculatus_F_contig10132.138.1 vs. uniprot
Match: A0A3L6PCT2_PANMI (Thioredoxin-dependent peroxiredoxin n=1 Tax=Panicum miliaceum TaxID=4540 RepID=A0A3L6PCT2_PANMI) HSP 1 Score: 154 bits (390), Expect = 2.490e-42 Identity = 81/149 (54.36%), Postives = 100/149 (67.11%), Query Frame = 1 Query: 25 RMVSVGQAAPDFKLNNQNGKPVALSSFKNKKKVVVFFYPKDSTPGCTKEAQTFQSDLAKFKKAGAEVIGISSD--ADHTEFVKENNLSMTLLSDIGGKVRKAWKVKGAVFGTIDGRVTYVLDKNGVVTSMYDNLLDGAAHSKEALKALE 465
R+V+ G P+F L +QNG+PV+L+ FK K VVV+FYP D TPGCTK+A F+ KFKKAGAEV+GIS D A H F ++ L TLLSD G +VRK W V G +FGT+ GR TYVLDKNGVV +Y+N H E LK L+
Sbjct: 7 RLVTKGSVPPNFTLKDQNGRPVSLNKFKGKP-VVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVLGISGDDTASHKAFAQKYRLPFTLLSDEGNRVRKEWGVPGDLFGTLPGRQTYVLDKNGVVQYIYNNQFQPEKHIGETLKILQ 154 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10132.138.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig10132.138.1 >prot_E-fasciculatus_F_contig10132.138.1 ID=prot_E-fasciculatus_F_contig10132.138.1|Name=mRNA_E-fasciculatus_F_contig10132.138.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=148bp MVSVGQAAPDFKLNNQNGKPVALSSFKNKKKVVVFFYPKDSTPGCTKEAQback to top mRNA from alignment at E-fasciculatus_F_contig10132:468..4712- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig10132.138.1 ID=mRNA_E-fasciculatus_F_contig10132.138.1|Name=mRNA_E-fasciculatus_F_contig10132.138.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=4245bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10132:468..4712- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10132:468..4712- >mRNA_E-fasciculatus_F_contig10132.138.1 ID=mRNA_E-fasciculatus_F_contig10132.138.1|Name=mRNA_E-fasciculatus_F_contig10132.138.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=888bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10132:468..4712- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |