mRNA_E-fasciculatus_F_contig1012.128.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1012.128.1 vs. uniprot
Match: D7G3Z6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3Z6_ECTSI) HSP 1 Score: 353 bits (907), Expect = 2.710e-117 Identity = 172/229 (75.11%), Postives = 192/229 (83.84%), Query Frame = 3 Query: 138 MGKFAFGLALAFMLSLTSGGKTGGSRMKTYKVRVTNLTFKQDFSPPMIVVHEKGSKPLFSHGVRARHAVKLMAEEGINRKIQEIATNEAGFCGFAV--AKGPLLPGKTWHGEINFNAKKCKDPVYSVVAKLDNTNDAFMGIAGSKFPKDECPSKHFPPAFDAGTEKNNERCNCMPGRACPESTRNQREVHTRGSEGFIHVHRGFQGVGDLSKEDYGWQNPVAEVVVSKA 818 M KFAFGLALA MLSL SG K GSRM+TYKVRVTNLTFKQDFS +IV HEKGS+PLFS G +AR+A+ ++AEEG++ +Q IAT E GFCGFA +KG + PGKTW G+I F+A KCKDPVYSVVAKLDNTNDAFMGIAGSKFP CPSKHFPPAFDAG+E NNE+C CMPGRACP+ TR+ RE H R SEGFIHVHRGFQG+GDLSK DYGWQNPVA VVVSKA Sbjct: 1 MVKFAFGLALASMLSLASGSKMRGSRMQTYKVRVTNLTFKQDFSAAIIVAHEKGSRPLFSEGAKARNAISMLAEEGLSGNVQNIATRERGFCGFAAPESKGLIFPGKTWEGKIQFDANKCKDPVYSVVAKLDNTNDAFMGIAGSKFPAGSCPSKHFPPAFDAGSETNNEKCTCMPGRACPKGTRDARERHGRNSEGFIHVHRGFQGIGDLSK-DYGWQNPVAVVVVSKA 228
BLAST of mRNA_E-fasciculatus_F_contig1012.128.1 vs. uniprot
Match: D7G405_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G405_ECTSI) HSP 1 Score: 344 bits (883), Expect = 6.760e-114 Identity = 168/215 (78.14%), Postives = 183/215 (85.12%), Query Frame = 3 Query: 174 MLSLTSGGKTGGSRMKTYKVRVTNLTFKQDFSPPMIVVHEKGSKPLFSHGVRARHAVKLMAEEGINRKIQEIATNEAGFCGFAVAKGPLLPGKTWHGEINFNAKKCKDPVYSVVAKLDNTNDAFMGIAGSKFPKDECPSKHFPPAFDAGTEKNNERCNCMPGRACPESTRNQREVHTRGSEGFIHVHRGFQGVGDLSKEDYGWQNPVAEVVVSKA 818 MLSL SGG T GS MKTYKVRVTNLTFKQDFSPP+IV HEKGS+PLFS G +AR A+K MAEEG+N ++ IAT E+GFCGFAVA+GPLLPGKTW+GEI F+ KCK+PVYSVVAKL NTNDAFMGI GSKF D+CPSK FPPAFDAGTEKNNE+C CMPGRACP S + RE H RGSEGFIHVHRG GVGDLSK DYGW NPVAEVVVSKA Sbjct: 1 MLSLASGGSTSGSSMKTYKVRVTNLTFKQDFSPPIIVAHEKGSRPLFSMGGKARPAIKRMAEEGVNGMVKVIATRESGFCGFAVAEGPLLPGKTWNGEITFDTNKCKEPVYSVVAKLTNTNDAFMGIDGSKF-LDKCPSKRFPPAFDAGTEKNNEKCTCMPGRACPASPKT-RENHGRGSEGFIHVHRGIDGVGDLSKADYGWNNPVAEVVVSKA 213
BLAST of mRNA_E-fasciculatus_F_contig1012.128.1 vs. uniprot
Match: D7G413_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G413_ECTSI) HSP 1 Score: 304 bits (778), Expect = 3.170e-98 Identity = 152/204 (74.51%), Postives = 169/204 (82.84%), Query Frame = 3 Query: 216 MKTYKVRVTNLTFKQDFSPPMIVVHEKGSKPLFSHGVRARHAVKLMAEEGINRKIQEIATNEAGFCGFAVAKGPLLPGKTWHGEINFNAKKCKDPVYSVVAKLDNTNDAFMGIAGSKFPKDECPSKHFPPAFDAGTEKNNERCNCMPGRACPESTRNQREVHTRGSEGFIHVHRGFQGVGDLSKEDYGWQNPVAEVVVSKA*GE 827 M+TYKVRVTNLTFKQDFSPP+IV HEKGS PLFS G +AR A+K MAEEG+NR I+ IAT E GFCGFA A+GPLLPGKTW+GEI F+A KCK PVYSVVAKL NTNDAFMGI GSKF D+ PSK FPPAFDAGTEKNNE+C C+ GRACP S + + + RGSEGFIHVHRG GVGDLS+ DY W+NPVAEVVVSK GE Sbjct: 1 METYKVRVTNLTFKQDFSPPIIVAHEKGS-PLFSKGRKARGAIKRMAEEGVNRFIEIIATREDGFCGFAAAEGPLLPGKTWNGEITFDANKCKRPVYSVVAKLTNTNDAFMGIDGSKF-LDKRPSKLFPPAFDAGTEKNNEKCTCIRGRACPASPKPRENLGGRGSEGFIHVHRGINGVGDLSQADYDWKNPVAEVVVSKVEGE 202
BLAST of mRNA_E-fasciculatus_F_contig1012.128.1 vs. uniprot
Match: D7G3Z4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3Z4_ECTSI) HSP 1 Score: 302 bits (774), Expect = 1.250e-96 Identity = 156/213 (73.24%), Postives = 171/213 (80.28%), Query Frame = 3 Query: 180 SLTSGGKTGGSRMKTYKVRVTNLTFKQDFSPPMIVVHEKGSKPLFSHGVRARHAVKLMAEEGINRKIQEIATNEAGFCGFAVAKGPLLPGKTWHGEINFNAKKCKDPVYSVVAKLDNTNDAFMGIAGSKFPKDECPSKHFPPAFDAGTEKNNERCNCMPGRACPESTRNQREVHTRGSEGFIHVHRGFQGVGDLSKEDYGWQNPVAEVVVSKA 818 S T+ + G SR KVRVTNLTFKQDFSPP+IV HEKGS LF G +AR A+KLMAE+G NR I IAT E GFCGFA A+GPLLPGKTW+GEI F+ KCK+PVYSVVAKL NTNDAFMGI GSKF D+ PSK FPPAFDAGTEKNNE+C CMPGRACP S ++ RE H GSEGFIHVHRG GVGDLSK DYGW+NPVAEVVVSKA Sbjct: 60 SRTTIDRGGTSRDDKGKVRVTNLTFKQDFSPPIIVAHEKGSH-LFPVGGKARPAIKLMAEDGNNRNIMAIATREGGFCGFAAAEGPLLPGKTWNGEITFDTDKCKEPVYSVVAKLTNTNDAFMGIDGSKF-LDKHPSKLFPPAFDAGTEKNNEKCTCMPGRACPASPKS-RENHGLGSEGFIHVHRGINGVGDLSKADYGWKNPVAEVVVSKA 269
BLAST of mRNA_E-fasciculatus_F_contig1012.128.1 vs. uniprot
Match: D7FIE5_ECTSI (Spondin domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIE5_ECTSI) HSP 1 Score: 189 bits (480), Expect = 1.830e-53 Identity = 103/219 (47.03%), Postives = 132/219 (60.27%), Query Frame = 3 Query: 174 MLSLTSGGKTGGSRMKT--YKVRVTNLTFKQDFSPPMIVVHEKGSKPLFSHGVRARHAVKLMAEEGINRKIQEIATNE---AGFCGFAVAKGPLLPGKTWHGEINFNAKKCKDPVYSVVAKLDNTNDAFMGIAGSKFPKDECPSKHFPPAFDAGTEKNNERCNCMPGRACPESTRNQREVHTRGSEGFIHVHRGFQGVGDLSKEDYGWQNPVAEVVVSK 815 M SL S G T +KVRV NLT+ Q FSPP+IV H K LF G A A+KLMAE+G N + E++ + CG VA+GP+ PG+TW G+++ + C +PVYSVV L NTNDAF+GI +K FPPAFDAGTE N+ERC+ +PG CP + N + EG+IHVHRG GVGDL + Y W+NPVAE+ + K Sbjct: 10 MASLVSLANASGKDYNTVPFKVRVRNLTYLQPFSPPLIVAHTK-DVALFKEGFPANDAIKLMAEDGDNSALLELSESSDVAPYICGVVVAEGPVFPGETWRGQLDVDPYICPNPVYSVVTMLINTNDAFVGIDSDTLELGS--TKAFPPAFDAGTEVNDERCSNIPGPGCPAGSGNNQNGP---GEGYIHVHRGVHGVGDLEEASYDWRNPVAEIYIQK 222
BLAST of mRNA_E-fasciculatus_F_contig1012.128.1 vs. uniprot
Match: D7G4K4_ECTSI (Spondin domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=D7G4K4_ECTSI) HSP 1 Score: 189 bits (479), Expect = 2.200e-53 Identity = 108/230 (46.96%), Postives = 137/230 (59.57%), Query Frame = 3 Query: 138 MGKFAFGLALAFMLSLTSGGKTGGSRMKTYKVRVTNLTFKQDFSPPMIVVHEKGSKPLFSHGVRARHAVKLMAEEGINRKIQEIATNE---AGFCGFAVAKGPLLPGKTWHGEINFNAKKCKDPVYSVVAKLDNTNDAFMGIAGSKFPKDECPSKHFPPAFDAGTEKNNERCNCMPGRACPESTRNQREVHTRGSEGFIHVHRGFQGVG-DLSKEDYGWQNPVAEVVVSK 815 M KF G ALA +LSL + +KVRV NLT+ Q FSP ++V H LF G+ A A+KLMAE+G N + E+A ++ CG +GP+ PG+TW G + + C DPVYSVV+ L NTNDAF+GI SK FPPAFDAGTE NNE C +PG ACP + N +V E FIHVHRGF GVG DL + +Y W+NPVAEV +++ Sbjct: 1 MVKFTAGFALASVLSL--------AHATDFKVRVRNLTYLQPFSPMLVVAHTN-DVALFKEGLPASDAIKLMAEDGDNSALLELAASDDVAPYICGAVAGEGPVFPGETWRGTLTIDESACPDPVYSVVSMLINTNDAFVGIDSDDL-NVYGSSKVFPPAFDAGTEANNELCTHIPGPACPADSGNMEDVP---GEEFIHVHRGFHGVGPDLGEANYDWRNPVAEVFIAR 217
BLAST of mRNA_E-fasciculatus_F_contig1012.128.1 vs. uniprot
Match: D7G4K3_ECTSI (Spondin domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4K3_ECTSI) HSP 1 Score: 163 bits (413), Expect = 6.180e-44 Identity = 94/198 (47.47%), Postives = 117/198 (59.09%), Query Frame = 3 Query: 231 VRVTNLTFKQDFSPPMIVVHEKGSKPLFSHGVRARHAVKLMAEEGINRKIQEIATNE---AGFCGFAVAKGPLLPGKTWHGEINFNAKKCKDPVYSVVAKLDNTNDAFMGIAGSKFPKDECPSKHFPPAFDAGTEKNNERCNCMPGRACPESTRNQREVHTRGSEGFIHVHRGFQGVG-DLSKEDYGWQNPVAEVVVS 812 VRV NLT+ Q FSP +V H +F G A AVK+MAE+G N + E+ +E CG + + PL PG TW G + + C D YSVV+ L NTNDAF+GI ++ E K FPPAFDAGTE NNE C +PG ACP + N + EGFI V RGF GVG DL + +Y W+NPVAEVVV+ Sbjct: 9 VRVRNLTYLQPFSPMFVVAHTNDVS-IFREGFPASDAVKIMAEDGDNSALVELLASEDVEPYICGGVMGEAPLFPGDTWRGVMTVDESICPDAQYSVVSMLINTNDAFVGIDSNRLVGTE---KVFPPAFDAGTEANNELCTHIPGPACPADSGNMEDGP---GEGFISVSRGFHGVGPDLGEANYDWRNPVAEVVVA 199
BLAST of mRNA_E-fasciculatus_F_contig1012.128.1 vs. uniprot
Match: A0A2K2H8D6_9DELT (Spondin domain-containing protein n=1 Tax=Geothermobacter hydrogeniphilus TaxID=1969733 RepID=A0A2K2H8D6_9DELT) HSP 1 Score: 126 bits (316), Expect = 7.870e-30 Identity = 78/227 (34.36%), Postives = 116/227 (51.10%), Query Frame = 3 Query: 135 KMGKFAFGLALAFMLSLTSGGKTGGSRMKTYKVRVTNLTFKQDFSPPMIVVHEKGSKPLFSHGVRARHAVKLMAEEGINRKIQEIATNEAGFCGFAVAKGPLLPGKTWHGEINFNAKKCKDPVYSVVAKLDNTNDAFMGIAGSKFPKDECPSKHFPPAFDAGTEKNNERCNCMPGRACPESTRNQREVHTRGSEGFIHVHRGFQGVGDLSKEDYGWQNPVAEVVVSK 815 K + G+ +A +LSL + G K Y+V +TNLT KQ +PP+++ H++G + +F G A + +AE G + + + AVA GP+LPG + ++ K + SVV L TNDAF + G + D + A+DAG+E N E+C +PG C R T G+EGFIHVH G G+GDL++ W+NPV V + K Sbjct: 2 KNSRMLTGVCVAILLSLVTSGLALADGGKMYQVTITNLTQKQVITPPLLISHKRGFE-VFRIGQAASDELVALAEGGDTQPLAAVLGTRDDVLDLAVAGGPILPGTSTTMQVRTRGKFNR---LSVVGMLATTNDAFFALQGVRGRSDRQIALTAV-AYDAGSEANTEQCAHIPGPPCGSQVR-----MTTGAEGFIHVHNGIHGIGDLNRAAMDWRNPVVRVTIEK 218
BLAST of mRNA_E-fasciculatus_F_contig1012.128.1 vs. uniprot
Match: A0A433PQD1_9FUNG (Spondin domain-containing protein n=1 Tax=Endogone sp. FLAS-F59071 TaxID=2340872 RepID=A0A433PQD1_9FUNG) HSP 1 Score: 120 bits (302), Expect = 8.380e-28 Identity = 86/205 (41.95%), Postives = 114/205 (55.61%), Query Frame = 3 Query: 219 KTYKVRVTNLTFKQDFSPPMIVVHEKGSKPLFSHGVRARHAVKLMAEEGINRKIQEIATNEA-GFCGFAVAKGPLLPGKTWHGEINFNAKKCKDPVYSVVAKLDNTNDAFMGIAGSKFPKDECPSKHFP-PAFDAGTEKNNERCNCMPGRACPESTRNQREVHTRG-SEGFIHVHRGFQGVGDLSKE----DYGWQNPVAEVVVS 812 KT+ + V NL + Q FSP + V+HE S LF G A A++ +AE G K + + G CG++VA G LP T+ G + + K C +P S+V L TNDAF GI + P SK F PA+DAGTE+NNE C + G CP S + T G EGF+HVHRG G+ ++SK DY W+NPVA + VS Sbjct: 26 KTFDITVQNLAYLQPFSPVLAVIHEP-SIYLFQLGTPASAALRAVAEGGDPSKFVALFQDGLEGICGWSVAPGKTLPSTTYKGTVTIS-KPCTNPHISIVNMLGITNDAFTGI--NTIPLYGELSKRFEVPAYDAGTEENNEDCQYVFG--CPGSP----NLDTPGLGEGFVHVHRGVHGL-NVSKPGLSVDYDWRNPVAYITVS 219
BLAST of mRNA_E-fasciculatus_F_contig1012.128.1 vs. uniprot
Match: A0A3B1BGY3_9ZZZZ (Spondin domain-containing protein n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A3B1BGY3_9ZZZZ) HSP 1 Score: 116 bits (290), Expect = 3.360e-26 Identity = 75/222 (33.78%), Postives = 112/222 (50.45%), Query Frame = 3 Query: 162 ALAFMLSLTSG---GKTGGSRMKTYKVRVTNLTFKQDFSPPMIVVHEKGSKPLFSHGVRARHAVKLMAEEGINRKIQEIATNEAGFCGFAVAKGPLLPGKTWHGEINFNAKKCKDPVY-SVVAKLDNTNDAFMGIAGSKFPKDECPSKHFPPAFDAGTEKNNERCNCMPGRACPESTRNQREVHTRGSEGFIHVHRGFQGVGDLSKEDYGWQNPVAEVVVSK 815 ++ + LS+ S S K Y V +TN+T Q F+P M+ H+KG +F G A + + +AE G N+ +Q+ N A + G L PG++ + K Y SV + L TNDAF+ I G + PK S P +DAG+E N+E C +PG C + + G EGF+H+H G GVGDL+ + W+NP A+VV+ + Sbjct: 7 SMLYFLSIASAVLAAPVQASDTKMYDVTITNITRGQTFTPIMVATHKKGQY-IFKLGDPASNELATIAESGNNQPLQDALLNSGAAYDTASSTGLLAPGES----VTVRVKAKGSFKYTSVASMLIPTNDAFIAINGVRAPKGHHASMLVSPTYDAGSEMNDELCANIPGPHCGGEGISAGD----GGEGFVHIHAGIHGVGDLAPAIFDWRNPTAKVVIKR 219 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1012.128.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1012.128.1 >prot_E-fasciculatus_F_contig1012.128.1 ID=prot_E-fasciculatus_F_contig1012.128.1|Name=mRNA_E-fasciculatus_F_contig1012.128.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=228bp MGKFAFGLALAFMLSLTSGGKTGGSRMKTYKVRVTNLTFKQDFSPPMIVVback to top mRNA from alignment at E-fasciculatus_F_contig1012:3509..7327+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1012.128.1 ID=mRNA_E-fasciculatus_F_contig1012.128.1|Name=mRNA_E-fasciculatus_F_contig1012.128.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3819bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1012:3509..7327+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1012:3509..7327+ >mRNA_E-fasciculatus_F_contig1012.128.1 ID=mRNA_E-fasciculatus_F_contig1012.128.1|Name=mRNA_E-fasciculatus_F_contig1012.128.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1368bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1012:3509..7327+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |