mRNA_E-fasciculatus_F_contig1011.121.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
|
Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1011.121.1 vs. uniprot
Match: D7FHR6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHR6_ECTSI) HSP 1 Score: 896 bits (2316), Expect = 3.050e-316 Identity = 590/848 (69.58%), Postives = 634/848 (74.76%), Query Frame = 1
Query: 1 MEVELDVVEEDVERKRVGKNPFDQRFTALTESPFTETSTSTA--GNGGHDIETISRHIIVRMEVIAKQIAFLSKETAGQPDKVLAGGGRVGASSSSASPVSRQQRNVSAQGAEDGPLAT---SADIGGRSGVNGXXXXXXXGTDGRSGDSSSPFGAPLVARLDLYHRIRQGQATAEDLIPAGML-AAPLGKASFRPKLVPKALTPPTIDNLASPTAPGILHGFIKHVKPFSVCYASAAQADRPPKEKVDDIPTDADNMSTSAADEGHGGXXXXXXXXXXXXXNGSEN-APNVCDYGDHVPCSPYEAAIDHATPTSSAGRSPAKTIAAAGAAATAGGGLTHTRAEEDGDASSISRSSKQGGEQERQHGAPRKPALPPAGGSEALRRAKARLQGKRKLSYPGFSSPIAESPATRPGYYEPEDGEDGDSAEGGKHGDEGAMSAAGGXXXXXXXXXXXXGGGSSALHRPLRGIDASRPTVAATVTAAARVRNLTGADGTRGVEASSQRKDYGNNGNSN--------NQGKEGATGKKRRGAVAGGXXXXXXXXXXGVDPSWLALSWSSAKQLRKQMEAAATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVSSIAPLGLVPCSNTLRMEFPPAADELGLECYLASLANPVRDLAAMKRAFEEEPQLSPADVSGGMTPSPEASPSLSALGATPPSDGFDFDLGPDFQNETAVATAVVAADDNIGEVGANVEADLPGGSAHPGSKTPKPNTAEPRGGALRTATARQPPPQLPAPPVRTSDAAATAKGLNPGGTCMIDLRNIWQRTGAVSRAISQARSGHTSPCNLFALAGAKRLEGP 2499
M+ LD VEEDVER RVGKNPFDQRFTALTESPFTETSTST GNGGH+IETISRHIIVRMEVIAKQIAFLSKETAGQP KVLAGGGRVGASSSSA+ R QRNVS +GA + PL T +A IG RSG N GT SGDSSSPFGAPLVARLDLY +IRQG ATAEDL+PAGML AAP G AS RP +P +T + D LAS TAPGILHGFIKHVKPFSVCYASAAQA+ PPKE DD+ +A ++ST DEG XXXXXXXXXXXXX A N C YGD +PCSPYEA I HATPTSSAGRSP T+ TAG GLTHTRAE+ GD+ SRS +QG EQERQHGAPRKPALPPAGG+EALRRAKARLQGKRKLSYPGFSSPI E+P TR GY E G+D AEGG++ D G MS G XX ALH LRG D S P+ A TV A AR+R +G GTRGV S+RK GN+ N ++GATGKKRRGAV GG XXXXXXXX +P W LSW SAKQLRKQMEAAATAA XXXXXXXXXXXXXXXX XXXXAVSSI PLGLVPCSN LR+EFPPAA+ GLECYL SLANP RDLAAMK AFEEEPQLSP +VSGGM P PEASP LSALG TPPSDGFDF LGPDFQNETAVATAVVAA D+I EVGANV+AD+P GS HPGS+TP PNTA PRGGALRT TA+Q PP LP+PPVR SDAAATA GLNPGGTCMIDLRNIWQRTGAVSRAISQARSGHTSP N+ LA RLE P
Sbjct: 1 MDAGLDTVEEDVERNRVGKNPFDQRFTALTESPFTETSTSTGQIGNGGHEIETISRHIIVRMEVIAKQIAFLSKETAGQPHKVLAGGGRVGASSSSATSAGRLQRNVSVEGAAERPLDTRAGNAKIGSRSGFN------DIGTGVASGDSSSPFGAPLVARLDLYRKIRQGLATAEDLLPAGMLSAAPSGMASSRPTPLPATVTSLSSDGLASSTAPGILHGFIKHVKPFSVCYASAAQANGPPKENDDDMHKNAKSVSTFVEDEGXXXXXXXXXXXXXXXXXXXXXVAANFCYYGDDMPCSPYEATIGHATPTSSAGRSPTTTMXXXXXXXTAGEGLTHTRAEKGGDSGDGSRSCEQGEEQERQHGAPRKPALPPAGGAEALRRAKARLQGKRKLSYPGFSSPIPENPITRLGYCEQAVGKD--IAEGGRYRDGGLMSVEG-------VRGGXXXXXXXALHSSLRGTDTSTPSAATTVAAVARLRTSSGVAGTRGVGGFSRRKRNGNDXXXXXXXXXXXXNGERKGATGKKRRGAVVGGVHXXXXXXXXXAEPGWSVLSWGSAKQLRKQMEAAATAAGKTASEGKGGRXXXXXXXXXXXXXXXXKNITLSDPVTGSXXXXAVSSIGPLGLVPCSNALRLEFPPAAE--GLECYLVSLANPFRDLAAMKSAFEEEPQLSP-EVSGGMVPFPEASPPLSALGGTPPSDGFDFVLGPDFQNETAVATAVVAAVDHIHEVGANVKADVPKGSTHPGSETPNPNTAGPRGGALRTVTAQQAPPPLPSPPVRPSDAAATANGLNPGGTCMIDLRNIWQRTGAVSRAISQARSGHTSPWNISTLADPNRLEAP 830
BLAST of mRNA_E-fasciculatus_F_contig1011.121.1 vs. uniprot
Match: A0A6H5K0U6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0U6_9PHAE) HSP 1 Score: 537 bits (1383), Expect = 3.230e-175 Identity = 478/902 (52.99%), Postives = 507/902 (56.21%), Query Frame = 1
Query: 178 MEVIAKQIAFLSKETAGQPDKVLAGGGRVGASSSSASPVSRQQRNVSAQGAEDGPLATS---ADIGGRSGVNGXXXXXXXGTDGRSGDSSSPFGAPLVARLDLYHRIRQGQATAEDLIPAGML-AAPLGKASFRPKLVPKALTPPTIDNLASPT---------------------------------APGILHGFIKHVKPFSVCYASAAQADRPPKEKVDDIPTDADNMSTSAADEGHG---GXXXXXXXXXXXXXNGSENAPNVCDYGDHVPCSPYEAAIDHATPTSSAGRSPAKTIAAAGAAATAGGGLTHTRAEEDGDASSISRSSKQGGEQERQHGAPRKPALPPAGGSEALRRAKARLQGKRKLSY--------------PGFSSPIAESPATRPGYYEPEDGEDGDSAEGGKHGDEGAMSAAGGXXXXXXXXXXXXGGGSSALHRPLRGIDASRPTVAATVTAAARVRNLTGAD----GTRGVEASSQRKDYGNNGNSNNQGKEGATGKKRRGAVAGGXXXXXXXXXXG---------VDPSWLALSWSSAKQLRKQMEAAATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVSSIAPLGLVPCSNTLRMEFPPAADELGLECYLASLANPVRDLAAMKRA----------------------------FEEEPQLSPADVSGGMTPSPEASPSLSALGATPPSDGFDFDLGPDFQNETAVATAVVAADDNIGEVGANVEADLPGGSAHP---------GSKTPKPNTAEPRGGALRTATARQPPPQLP------------------------APPVRTSDAAATAKGLNPGGTCMIDLRNIWQRTGAVSRAISQARSGHTSPCNLFALAGAKRLEGP 2499
MEVIAKQIAFLSKETAGQP KVLAGGGRVG SSSSAS RQQRN A+GAE PL TS ADIGGRSG G G+SSSPFGAPLVARLDLY RIRQG ATAE+L+PAGML AAPLG AS P +P +T T D LA PT APG+LHGFIKHVKPFSVC ASAAQA+ PPKE D I T+A +MS A DEG XXXXXXXXXXX GS A N CDYGD + CSPYEA I H TPTSSAGRSP T+AA LTHTRAE+ GD+ S SS+QG EQERQHGAPRKPALPP+GG+EALRRAKARLQGKRKLSY PG+SSPI E+ TRPG YE E G+D D EG XXXXXXXXXXX RG D GTRG XXXXXXXXXX + W ALSW SAKQLRKQMEAA XXXXXXXXXXXXXXXXXXXXXXXXX AVSSI PLGLVPCSN LR+EFPPAA GLECYL SLA P RDLAAMK A FEE PQLSP DVSG M+PSPEASP LSALG T PSDGFDFDLGPDFQNETAVATA V A D+I EVG NVEAD+P GS HP G+ + PR AR +L AP R S T + GGTCMIDLRNIWQRT AVSRAISQAR GHTSPCNL ALA RLE P
Sbjct: 1 MEVIAKQIAFLSKETAGQPHKVLAGGGRVGTSSSSASSAGRQQRN--AEGAEYKPLGTSPGNADIGGRSGY------YNDGPGVVCGNSSSPFGAPLVARLDLYRRIRQGLATAEELLPAGMLLAAPLGMASSPPTPLPATVTSLTSDGLACPTGEVTFLGASLQARRCCRGITLDSDGSFRDASPPAPGVLHGFIKHVKPFSVCNASAAQANGPPKENDDGISTNAKSMSKFAEDEGRSDGISDGXXXXXXXXXXXXGSGTAANFCDYGDDMHCSPYEATIGHVTPTSSAGRSPTITMAAXXXXXXXXXXLTHTRAEKGGDSGDGSSSSEQGVEQERQHGAPRKPALPPSGGAEALRRAKARLQGKRKLSYXXXXXXXXXXXXXXPGYSSPITENLITRPGCYEQEVGQDDDIVEGXXXXXXXXXXXX---XXXXXXXXXXXXXXXXXXXXXXRGTDXXXXXXXXXXXXXXXXXXXXXXXXXXXGTRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAETGWSALSWGSAKQLRKQMEAAGKPVPEGKGGRRSKGRGXXXXXXXXXXXXXXXXXXXXXXXXX-----AVSSIGPLGLVPCSNALRLEFPPAA---GLECYLVSLAAPARDLAAMKHALPRFHASYAGVEYFVANARALRCPSQSAFEENPQLSP-DVSGRMSPSPEASPPLSALGGTHPSDGFDFDLGPDFQNETAVATAFVPAVDHIDEVGVNVEADVPEGSTHPVGGRVNRVFGTICYRIRRKRPRHRCHXXXXARATRQRLQKASIQYNDNVEVSFVNNMRQKKAEAPTQRVSAPMLTPNSICAGGTCMIDLRNIWQRTEAVSRAISQARRGHTSPCNLSALADPNRLEAP 882 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1011.121.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1011.121.1 >prot_E-fasciculatus_F_contig1011.121.1 ID=prot_E-fasciculatus_F_contig1011.121.1|Name=mRNA_E-fasciculatus_F_contig1011.121.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=834bp MEVELDVVEEDVERKRVGKNPFDQRFTALTESPFTETSTSTAGNGGHDIEback to top mRNA from alignment at E-fasciculatus_F_contig1011:11177..18948- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1011.121.1 ID=mRNA_E-fasciculatus_F_contig1011.121.1|Name=mRNA_E-fasciculatus_F_contig1011.121.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=7772bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1011:11177..18948- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1011:11177..18948- >mRNA_E-fasciculatus_F_contig1011.121.1 ID=mRNA_E-fasciculatus_F_contig1011.121.1|Name=mRNA_E-fasciculatus_F_contig1011.121.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=5004bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1011:11177..18948- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |