mRNA_E-fasciculatus_F_contig1010.117.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1010.117.1 vs. uniprot
Match: D8LIG3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIG3_ECTSI) HSP 1 Score: 541 bits (1393), Expect = 5.730e-190 Identity = 288/344 (83.72%), Postives = 299/344 (86.92%), Query Frame = 1 Query: 64 ITATSMLCCLTCSLPGLSFVVSPPTRLRRRWSALPKARRLTTHASLNQFGTGRPRGAARARGGGFFLRQRAGITSRRRIHRWDWAVRSKDSPRGVSSSRDAASDQEEDDVLSFEEFEKEFLSAAPSRDGWNRGTDGAVDSAGAATGINWRLLVEDILVQPLFLGVFAVLAKPALCRQVKSSLSVTIHGAGLGILGSLPLFAYGLFLETRRDWAWVRTAQATTERAVLTLFGSKRQVTKVAAVSIPLSMLVGASEECGFRGFLPLILATHTSLPTAAIVVLSGIFCGMLHAVSLAYFVNATLNGIFFHCLLLSTGNIFVPMVAHAVHNSFALVHCHFKTSGEQLA 1095
++A SMLCCLTCSLPGLSFVVSPP R HAS N FGT R R AARARGGG+FLRQRAGI SRRRI RWDWAVRSKD PRGVSSSRDAASDQE DDVLSFEEFEK LSAAPSRDGW R DGAVDSAGA TGINWRLLVEDILVQPLF G+FAVLAKPA+ QVKSSLSVT+HGA +GILGSLPLFAYGLFLETRRDW WVR AQATTERAVL LFGSKRQVTKVAAVSIPLSMLV ASEECGFRG LPLILATHTSLPTAAIVVLSGIFCG+LHAVSLAYF+NATLNGIFFHCLLLSTGNIFVPMVAHAVHN+FALVHCH KTSG + A
Sbjct: 1 MSAASMLCCLTCSLPGLSFVVSPPIRFN-------------PHASPNHFGTRRQRRAARARGGGYFLRQRAGICSRRRIRRWDWAVRSKDLPRGVSSSRDAASDQE-DDVLSFEEFEKALLSAAPSRDGWYRSADGAVDSAGARTGINWRLLVEDILVQPLFFGIFAVLAKPAMRGQVKSSLSVTLHGACVGILGSLPLFAYGLFLETRRDWGWVRKAQATTERAVLKLFGSKRQVTKVAAVSIPLSMLVSASEECGFRGLLPLILATHTSLPTAAIVVLSGIFCGVLHAVSLAYFLNATLNGIFFHCLLLSTGNIFVPMVAHAVHNAFALVHCHIKTSGGEPA 330
BLAST of mRNA_E-fasciculatus_F_contig1010.117.1 vs. uniprot
Match: D8LIG1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIG1_ECTSI) HSP 1 Score: 195 bits (496), Expect = 2.840e-54 Identity = 109/207 (52.66%), Postives = 132/207 (63.77%), Query Frame = 1 Query: 460 GTDGAVDSAGAATGINWRLLVEDILVQPLFLGVFAVLAKPALCRQVKSSLSVTIHGAGLGILGSLPLFAYGLFLETRRDWAWVRTAQATTERAVLTLFGSKRQVTKVAAVSIPLSMLVGASEECGFRGFLPLILATHTSLPTAAIVVLSGIFCGMLHAVSLAYFVNATLNGIFFHCLLLSTGNIFVPMVAHAVHNSFALVHCHFKTS 1080
G GAVD GI+W LV Q F+G+F ++A A+ QV S+ V+ LG+ G +PL YGL L+ +W WVR T L LFGSKRQ+ KV V IPLSMLVG EEC FRGFLPLILA T LP AAIV LS G LHA ++AYF+ ATL+G+FFH L LSTGNIFVP+VAHAV+++ ALV H K +
Sbjct: 170 GRGGAVD---VPPGISWVALVAVAATQLAFVGLFVLVASAAMREQVVSACMVSPAATALGVAGMVPLLGYGLLLDRWTEWEWVRKIDEATSEVALQLFGSKRQLGKVTGVVIPLSMLVGLCEECAFRGFLPLILAAKTGLPMAAIVGLSATIFGSLHAATVAYFLTATLSGMFFHGLFLSTGNIFVPIVAHAVYDAIALVRYHVKVT 373
BLAST of mRNA_E-fasciculatus_F_contig1010.117.1 vs. uniprot
Match: A0A6H5JG43_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG43_9PHAE) HSP 1 Score: 173 bits (439), Expect = 1.710e-49 Identity = 85/93 (91.40%), Postives = 89/93 (95.70%), Query Frame = 1 Query: 805 MLVGASEECGFRGFLPLILATHTSLPTAAIVVLSGIFCGMLHAVSLAYFVNATLNGIFFHCLLLSTGNIFVPMVAHAVHNSFALVHCHFKTSG 1083
M+V SEECGFRGFLPLILATHTSLPTAAIVVLSGIFCG+LHAVSLAYF+NATLNGIFFHCLLLSTGNI VPMVAHAVHN+FALVHCH KTSG
Sbjct: 1 MIVSVSEECGFRGFLPLILATHTSLPTAAIVVLSGIFCGVLHAVSLAYFLNATLNGIFFHCLLLSTGNILVPMVAHAVHNAFALVHCHLKTSG 93
BLAST of mRNA_E-fasciculatus_F_contig1010.117.1 vs. uniprot
Match: A0A6H5JEH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEH8_9PHAE) HSP 1 Score: 172 bits (437), Expect = 4.410e-46 Identity = 108/256 (42.19%), Postives = 153/256 (59.77%), Query Frame = 1 Query: 388 DVLSFEEFEKEFLSAA---------PSRDGWNRGT-DGAVDSAGAAT---------------GINWRLLVEDILVQPLFLGVFAVLAKPALCRQVKSSLSVTIHGAGLGILGSLPLFAYGLFLETRRDWAWVRTAQ--ATTERAVLTLFGSKRQVTKVAAVSIPLSMLVGASEECGFRGFLPLILATHTSLPTAAIVVLSGIFCGMLHAVSLAYFVNATLNGIFFHCLLLSTGNIFVPMVAHAVHNSFALVHCHFK 1074
+ LS EEFE SAA P+ DG G+ +GA D++ A T GINW ++ ++ Q LFLG FA LA PA+ Q++SS ++ G GLG G++P+F YGL+L T+ +W W++ + A + L LFG +RQV +VA VS+PL+MLV EEC +RG +PL+L T LP AA+V +S +FCG HA +L ++A + G++ HCLLLST +I VP+VAHAV ++ V H K
Sbjct: 83 EALSREEFEA--WSAAXXXXXXXXXPTGDGRRTGSANGASDASDATTSVCVEEVYSSRASPAGINWTSILLSVVDQVLFLGFFAWLATPAIREQLRSSFVLSFPGIGLGAAGAVPMFVYGLYLGTQ-NWPWLKRHEQKAAADIKDLNLFGRRRQVARVAVVSVPLAMLVALCEECVYRGLVPLLLVAKTGLPVAAVVGISAVFCGARHAGTLGSAIDAAVLGMYVHCLLLSTRSILVPIVAHAVFDAILFVVGHLK 335
BLAST of mRNA_E-fasciculatus_F_contig1010.117.1 vs. uniprot
Match: A0A835ZC13_9STRA (CAAX protease self-immunity-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC13_9STRA) HSP 1 Score: 82.8 bits (203), Expect = 1.300e-14 Identity = 62/189 (32.80%), Postives = 93/189 (49.21%), Query Frame = 1 Query: 529 ILVQPLFLGVFAVLAKPALCRQVKSSLSVTIHGAGLGILGSLPLFAYGLFLETRRDWAWVRTAQATTERAVLTLFGSKRQVTKVAAVSIPLSMLVGASEECGFRGFLPLILATHTSLPTAAIVVLSGIFCGMLHAVSLAYFVNATLNGIFFHCLLLSTGNIFVPMVAHAVHNSFALVHCHFKTSGEQLA 1095
+LV L A+ AL + S++S+T G G+LG+LP+ LE + W WV+ T ++TL G ++ + + G EE FRG L L + S T A V S + G+LHAV+ Y V A + G +F L L +GN+ VP+VAHAV++ A++ + GE A
Sbjct: 1 VLVSQWLLVPIALAIAKALSLDILSTVSITGMDIGYGVLGALPVAGVMALLEITQ-WGWVQRISERTRTFLITLLGKDGGGIFGLFFALGVGIAAGVGEELMFRGLLQGGLQRYLS--TEAAVAASAVVFGLLHAVTPMYAVCAGITGAYFSLLWLWSGNLVVPIVAHAVYDIGAMLLLSLQLRGESSA 186
BLAST of mRNA_E-fasciculatus_F_contig1010.117.1 vs. uniprot
Match: A0A7H4GRI0_9GAMM (CPBP family intramembrane metalloprotease n=1 Tax=Wenzhouxiangella sp. AB-CW3 TaxID=2771012 RepID=A0A7H4GRI0_9GAMM) HSP 1 Score: 69.7 bits (169), Expect = 3.510e-10 Identity = 60/189 (31.75%), Postives = 97/189 (51.32%), Query Frame = 1 Query: 544 LFLGVFAVLAKPALCRQVK----SSLSVTIHGAGLGILGSLPLFAYGLFLETRRDWAWVRTAQATTERAVLTLFGSKRQVTKVAAVSIPLSMLVGASEECGFRGF----LPLILATHTSLPTAAIVVLSGIFCGMLHAVSLAYFVNATLNGIFFHCLLLSTGNIFVPMVAHAVHNSFALVHCHFKTSGE 1086
+F G VLA ALC +S+ ++ L + ++PL LF+ +WAW R A + + LF R+ + + V + + L G EE FRGF L L+L +L AA++ G++HAV+ AYF+ ATL G + + L+TGN+ VP++ HA+++ A+ + FK + E
Sbjct: 10 IFQGGLVVLAV-ALCLLFGLTPWASMEWSLPALALAVTLTVPLLLPLLFMR-HLNWAWAREIHAVVNQLIKLLF---RRAPRGSVVLV--AALAGIGEELLFRGFIQDGLDLLLGPIPALLIAAVLF------GLVHAVTRAYFIIATLMGAYLGWIYLATGNLLVPILIHALYDWIAIRYYLFKLTTE 185
BLAST of mRNA_E-fasciculatus_F_contig1010.117.1 vs. uniprot
Match: A0A2E3A4H5_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2E3A4H5_9BACT) HSP 1 Score: 67.4 bits (163), Expect = 3.650e-9 Identity = 57/183 (31.15%), Postives = 94/183 (51.37%), Query Frame = 1 Query: 514 LLVEDILVQPLFLGVFAVLAKPALCRQVKSSLSVTIHGAGLGILGSLPLFAYGLFLETRRDWAWVRTAQATTERAVLTLFGSKRQVTKVAAVSIP------LSMLVGASEECGFRGFLPLILATHTSLPTAAIVVLSGIFCGMLHAVSLAYFVNATLNGIFFHCLLLSTGNIFVPMVAHAVHN 1044
L++E +LV L + P L + +S G G+ SLP+ AY +F + A+ R A +R ++ R++ A + +P L M G EEC FRG L ++ TS P A ++L+G+ G+LHA++ AYF+ AT+ I+F L+ TGN+ P++AH +++
Sbjct: 17 LILETVLVVIATLVSYLFFDTPLL-----NPISFDREGLLTGVAASLPMVAYFVFSLS----AFGRNL-APLKR----IYDLLRRMLARALIEMPTWQIVLLGMSAGIGEECLFRGVLQPVVEGWTSTPAA--ILLTGLIFGLLHALTPAYFILATILSIYFGFLVYYTGNLMTPILAHGLYD 183
BLAST of mRNA_E-fasciculatus_F_contig1010.117.1 vs. uniprot
Match: A0A5B9Q9G7_9BACT (CAAX amino terminal protease self-immunity n=1 Tax=Bythopirellula goksoeyrii TaxID=1400387 RepID=A0A5B9Q9G7_9BACT) HSP 1 Score: 64.3 bits (155), Expect = 2.760e-8 Identity = 53/179 (29.61%), Postives = 85/179 (47.49%), Query Frame = 1 Query: 550 LGVFAVLAKPALCRQVKSSLSVTIHGAGLGILGSLPLFAYGLFLETRRDWAWVRTAQATTERAVLTLFGSKRQVTKVAAVSIPLSMLVGASEECGFRGFLPLILATHTSLPTAAIVVLSGIFCGMLHAVSLAYFVNATLNGIFFHCLLLSTGNIFVPMVAHAVHNSFALVHCHFKTSGE 1086
LG VL ++ LS T+ GI+ SLP+ L DW + + E V LF + + +S+ G EE FRG L + + T+L V+L+ + G+ HA+S AYF+ AT+ G++F L + ++ P+VAHA ++ ALV+ ++ GE
Sbjct: 19 LGFLGVLVAWLGSISLQGRLSFTLDSVLRGIVASLPMILL-LLAAYEVDWKPLAKLRRNVEHVVRELFAGCGWME-----FLLVSLAAGLGEEILFRGALQPLFISWTTLWIG--VILTALLFGLAHAMSTAYFLAATVIGLYFGWLAWAYEDLVAPIVAHAFYDFVALVYVSYRARGE 189
BLAST of mRNA_E-fasciculatus_F_contig1010.117.1 vs. uniprot
Match: A0A5Q4GZ09_9GAMM (CPBP family intramembrane metalloprotease n=1 Tax=Wenzhouxiangella sp. TaxID=1979961 RepID=A0A5Q4GZ09_9GAMM) HSP 1 Score: 62.8 bits (151), Expect = 9.160e-8 Identity = 50/167 (29.94%), Postives = 81/167 (48.50%), Query Frame = 1 Query: 544 LFLGVFAVLAKPALCRQVKSSLSVTIHGAGLGILGSLPLFAYGLFLETRRDWAWVRTAQATTERAVLTLFGSKRQVTKVAAVSIPLSMLVGASEECGFRGFLPLILATHTSLPTAAIVVLSGIFCGMLHAVSLAYFVNATLNGIFFHCLLLSTGNIFVPMVAHAVHN 1044
L L V AV+ + + T+ +LG+LPL G +L R WAW+R + + V LF T ++L G EE FRG + L+ P A++ S +F G +HA++ AYFV AT+ G++ + L TGN+ +P++ H +++
Sbjct: 23 LGLAVLAVMLGWVFGLDLFGRIEFTLAALNWSVLGTLPLLLAGWWLF-RSSWAWMRELKRLVQEMVTLLFRDAPPGTVFLV-----ALLAGVGEELLFRGVVQGGLSGLIG-PWGALLAASLLF-GAMHALTRAYFVVATIMGLYLGLIYLWTGNLLIPILIHFLYD 181
BLAST of mRNA_E-fasciculatus_F_contig1010.117.1 vs. uniprot
Match: UPI001963FA39 (CPBP family intramembrane metalloprotease n=1 Tax=Amphritea pacifica TaxID=2811233 RepID=UPI001963FA39) HSP 1 Score: 62.4 bits (150), Expect = 1.260e-7 Identity = 46/149 (30.87%), Postives = 77/149 (51.68%), Query Frame = 1 Query: 619 IHGAGL--GILGSLPLFAYGLFLETRRDWAWVRTAQATTERAVLTLFGSKRQVTKVAAVSIPLSMLVGASEECGFRGFLPLILATHTSLPTAAIVVLSGIFCGMLHAVSLAYFVNATLNGIFFHCLLLSTGNIFVPMVAHAVHNSFALV 1059
+ GAG+ G+L +LPL L D+ V ++ + LF +T I G EE FRG + +LATH + + V+++ + G++H++SLAY ++ATL GI+ LLL N+ VP++ H++++ LV
Sbjct: 45 LSGAGVIQGVLATLPLLLLVL-CAAALDFRPVERLFRLSQERISRLFRGTPLLTLALVAGI-----AGLGEEALFRGVIQTLLATHLNALSG--VLIAAVLFGLVHSLSLAYAISATLIGIYLGWLLLCFDNLLVPIMTHSLYDFIVLV 185 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1010.117.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 21 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1010.117.1 >prot_E-fasciculatus_F_contig1010.117.1 ID=prot_E-fasciculatus_F_contig1010.117.1|Name=mRNA_E-fasciculatus_F_contig1010.117.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=384bp MPPCPFCPRLACSPMKTITATSMLCCLTCSLPGLSFVVSPPTRLRRRWSAback to top mRNA from alignment at E-fasciculatus_F_contig1010:11535..14810- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1010.117.1 ID=mRNA_E-fasciculatus_F_contig1010.117.1|Name=mRNA_E-fasciculatus_F_contig1010.117.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3276bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1010:11535..14810- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1010:11535..14810- >mRNA_E-fasciculatus_F_contig1010.117.1 ID=mRNA_E-fasciculatus_F_contig1010.117.1|Name=mRNA_E-fasciculatus_F_contig1010.117.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2304bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1010:11535..14810- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |