mRNA_E-fasciculatus_F_contig10098.107.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig10098.107.1 vs. uniprot
Match: D8LNI5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNI5_ECTSI) HSP 1 Score: 234 bits (597), Expect = 4.320e-75 Identity = 119/127 (93.70%), Postives = 122/127 (96.06%), Query Frame = 1 Query: 1 RQIASWRGGAVESSDGRPPLMNAQLGLVRVAGYGIIAGSLCLKTPQIARVWHAKSLVGLAPASIYADVFLFATSVIYHVLKRNPIRAYGESVVVLFQTLVMVGLLWRFGTEEEVAVSDGGSGDEEGV 381
RQIASWRGGAVESS+G PPLMN QLGLVRVAGYGIIAGSLCLKTPQIARVWHAKSLVGLAPASIYADVFLFATSVIYHVLK+NPIRAYGESVVVLFQTLVMVGLLWRFG EEEVAVSDGG GDEE +
Sbjct: 48 RQIASWRGGAVESSEGGPPLMNVQLGLVRVAGYGIIAGSLCLKTPQIARVWHAKSLVGLAPASIYADVFLFATSVIYHVLKKNPIRAYGESVVVLFQTLVMVGLLWRFGAEEEVAVSDGG-GDEEAL 173
BLAST of mRNA_E-fasciculatus_F_contig10098.107.1 vs. uniprot
Match: A0A6H5K508_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K508_9PHAE) HSP 1 Score: 197 bits (502), Expect = 1.550e-61 Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 1 Query: 61 MNAQLGLVRVAGYGIIAGSLCLKTPQIARVWHAKSLVGLAPASIYADVFLFATSVIYHVLKRNPIRAYGESVVVLFQTLVMVGLLWRFGTEEEVAVSDG 357
MNAQLGLVRVAGYGIIAGSLCLKTPQIARVWHAKSLVGLAPASIYADVFLFATSVIYHVLKRNPIRAYGESVVVLFQTLVMVGLLWRFGTEEEVAVSDG
Sbjct: 1 MNAQLGLVRVAGYGIIAGSLCLKTPQIARVWHAKSLVGLAPASIYADVFLFATSVIYHVLKRNPIRAYGESVVVLFQTLVMVGLLWRFGTEEEVAVSDG 99
BLAST of mRNA_E-fasciculatus_F_contig10098.107.1 vs. uniprot
Match: A0A836CGJ2_9STRA (Mannose-P-dolichol utilization defect 1 protein homolog n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGJ2_9STRA) HSP 1 Score: 79.0 bits (193), Expect = 3.250e-15 Identity = 37/86 (43.02%), Postives = 57/86 (66.28%), Query Frame = 1 Query: 67 AQLGLVRVAGYGIIAGSLCLKTPQIARVWHAKSLVGLAPASIYADVFLFATSVIYHVLKRNPIRAYGESVVVLFQTLVMVGLLWRF 324
A++ ++AG GII GS+ +K PQI R+ A+S++GL+ + Y +V L + VIYH K P AYGE+ +L Q L++V L+WR+
Sbjct: 45 ARVIFAKLAGLGIIVGSMGMKLPQIMRILEARSVLGLSLTANYFEVPLVSNGVIYHFKKGYPFSAYGENAFLLVQNLIVVALMWRY 130
BLAST of mRNA_E-fasciculatus_F_contig10098.107.1 vs. uniprot
Match: A0A7S1GSU5_HEMAN (Hypothetical protein (Fragment) n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1GSU5_HEMAN) HSP 1 Score: 75.1 bits (183), Expect = 7.930e-14 Identity = 33/82 (40.24%), Postives = 56/82 (68.29%), Query Frame = 1 Query: 79 LVRVAGYGIIAGSLCLKTPQIARVWHAKSLVGLAPASIYADVFLFATSVIYHVLKRNPIRAYGESVVVLFQTLVMVGLLWRF 324
L +V G I+ GS LK PQI ++ + S+ GL+P ++Y ++ L+++ VIYH+L+ P+ YGE VV++FQ + +V L+W +
Sbjct: 37 LSKVLGTMIVMGSFFLKMPQIVKIIASGSVAGLSPEAVYYELPLYSSGVIYHLLQGLPLSTYGEMVVIMFQNITIVLLMWWY 118
BLAST of mRNA_E-fasciculatus_F_contig10098.107.1 vs. uniprot
Match: A0A2S2PXW9_9HEMI (Mannose-P-dolichol utilization defect 1 protein homolog n=1 Tax=Sipha flava TaxID=143950 RepID=A0A2S2PXW9_9HEMI) HSP 1 Score: 73.6 bits (179), Expect = 3.040e-13 Identity = 32/86 (37.21%), Postives = 56/86 (65.12%), Query Frame = 1 Query: 94 GYGIIAGSLCLKTPQIARVWHAKSLVGLAPASIYADVFLFATSVIYHVLKRNPIRAYGESVVVLFQTLVMVGLLWRFGTEEEVAVS 351
G+GI+ GSL +K PQ+ +VW++KS VG++ ++ D+F +V+Y + P A+G+S+ +LFQTL++V L+ + + A S
Sbjct: 45 GFGIVGGSLLVKLPQVLKVWNSKSAVGISLINVCMDLFAVTANVVYSYSSQFPFSAWGDSLFILFQTLLIVILVLYYNISKRAASS 130
BLAST of mRNA_E-fasciculatus_F_contig10098.107.1 vs. uniprot
Match: J9K4J7_ACYPI (Mannose-P-dolichol utilization defect 1 protein homolog n=8 Tax=Aphidinae TaxID=133076 RepID=J9K4J7_ACYPI) HSP 1 Score: 73.2 bits (178), Expect = 4.250e-13 Identity = 30/84 (35.71%), Postives = 56/84 (66.67%), Query Frame = 1 Query: 94 GYGIIAGSLCLKTPQIARVWHAKSLVGLAPASIYADVFLFATSVIYHVLKRNPIRAYGESVVVLFQTLVMVGLLWRFGTEEEVA 345
G+GI+ GSL +K PQ+ +VW +KS VG++ ++ D+F ++V+Y + P ++G+S+ +LFQTL++V L++ + + A
Sbjct: 45 GFGIVGGSLLVKLPQVIKVWQSKSAVGISLVNVCMDLFAVTSNVVYSYSSQFPFSSWGDSLFILFQTLLIVILVFYYNISKRAA 128
BLAST of mRNA_E-fasciculatus_F_contig10098.107.1 vs. uniprot
Match: A0A6G0Y8K2_APHCR (Mannose-P-dolichol utilization defect 1 protein homolog n=1 Tax=Aphis craccivora TaxID=307492 RepID=A0A6G0Y8K2_APHCR) HSP 1 Score: 71.6 bits (174), Expect = 1.410e-12 Identity = 28/70 (40.00%), Postives = 49/70 (70.00%), Query Frame = 1 Query: 94 GYGIIAGSLCLKTPQIARVWHAKSLVGLAPASIYADVFLFATSVIYHVLKRNPIRAYGESVVVLFQTLVM 303
G+GI+ GSL +K PQ+ +VWH+KS VG++ ++ D+F +V+Y + P ++G+S+ +LFQTL++
Sbjct: 45 GFGIVGGSLLVKLPQVIKVWHSKSAVGISLVNVCMDLFAVTANVVYSYSSQFPFSSWGDSLFILFQTLLI 114
BLAST of mRNA_E-fasciculatus_F_contig10098.107.1 vs. uniprot
Match: UPI000CDA2337 (mannose-P-dolichol utilization defect 1 protein n=1 Tax=Cyanistes caeruleus TaxID=156563 RepID=UPI000CDA2337) HSP 1 Score: 68.2 bits (165), Expect = 8.170e-12 Identity = 33/83 (39.76%), Postives = 52/83 (62.65%), Query Frame = 1 Query: 79 LVRVAGYGIIAGSLCLKTPQIARVWHAKSLVGLAPASIYADVFLFATSVIYHVLKRNPIRAYGESVVVLFQTLVMVGLLWRFG 327
L +V GYGI+AGS+ +K PQ+ +VW ++S GL+ S+ ++ SV Y + P A+GES+ +L QTL ++ L+ FG
Sbjct: 37 LSKVLGYGIVAGSVLVKVPQLLKVWGSRSGGGLSLPSVLLELLALGGSVGYGCARSFPFSAWGESLFLLLQTLTLLFLILHFG 119
BLAST of mRNA_E-fasciculatus_F_contig10098.107.1 vs. uniprot
Match: A0A674HUV8_TAEGU (Solute carrier family 66 member 3 n=10 Tax=root TaxID=1 RepID=A0A674HUV8_TAEGU) HSP 1 Score: 68.2 bits (165), Expect = 2.790e-11 Identity = 33/83 (39.76%), Postives = 52/83 (62.65%), Query Frame = 1 Query: 79 LVRVAGYGIIAGSLCLKTPQIARVWHAKSLVGLAPASIYADVFLFATSVIYHVLKRNPIRAYGESVVVLFQTLVMVGLLWRFG 327
L +V GYGI+AGS+ +K PQ+ +VW ++S GL+ S+ ++ SV Y + P A+GES+ +L QTL ++ L+ FG
Sbjct: 37 LSKVLGYGIVAGSVLVKVPQLLKVWGSRSGGGLSLPSVLLELLALGGSVGYGCARSFPFSAWGESLFLLLQTLTLLFLILHFG 119
BLAST of mRNA_E-fasciculatus_F_contig10098.107.1 vs. uniprot
Match: UPI001361FB74 (mannose-P-dolichol utilization defect 1 protein isoform X2 n=1 Tax=Corvus moneduloides TaxID=1196302 RepID=UPI001361FB74) HSP 1 Score: 67.8 bits (164), Expect = 2.940e-11 Identity = 33/92 (35.87%), Postives = 55/92 (59.78%), Query Frame = 1 Query: 79 LVRVAGYGIIAGSLCLKTPQIARVWHAKSLVGLAPASIYADVFLFATSVIYHVLKRNPIRAYGESVVVLFQTLVMVGLLWRFGTEEEVAVSD 354
L ++ GYGI+AGS+ +K PQ+ +VW ++S GL+ S+ ++ SV Y + P A+GE++ +L QTL ++ L+ FG A +D
Sbjct: 37 LSKILGYGIVAGSVLVKVPQLLKVWGSRSGGGLSLPSVLLELLALGGSVGYGCARSFPFSAWGEALFLLLQTLTLLFLILHFGGRTGRAAAD 128 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10098.107.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig10098.107.1 >prot_E-fasciculatus_F_contig10098.107.1 ID=prot_E-fasciculatus_F_contig10098.107.1|Name=mRNA_E-fasciculatus_F_contig10098.107.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=127bp RQIASWRGGAVESSDGRPPLMNAQLGLVRVAGYGIIAGSLCLKTPQIARVback to top mRNA from alignment at E-fasciculatus_F_contig10098:3808..5035+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig10098.107.1 ID=mRNA_E-fasciculatus_F_contig10098.107.1|Name=mRNA_E-fasciculatus_F_contig10098.107.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1228bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10098:3808..5035+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10098:3808..5035+ >mRNA_E-fasciculatus_F_contig10098.107.1 ID=mRNA_E-fasciculatus_F_contig10098.107.1|Name=mRNA_E-fasciculatus_F_contig10098.107.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=762bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10098:3808..5035+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |