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Homology
BLAST of mRNA_E-fasciculatus_F_contig10098.106.1 vs. uniprot
Match: D8LNI5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNI5_ECTSI) HSP 1 Score: 73.6 bits (179), Expect = 3.020e-14 Identity = 43/48 (89.58%), Postives = 43/48 (89.58%), Query Frame = 1 Query: 1 MLLVRGLSLLAVGLAAAPTGCALVSPTPLPRTTAGGHSAAAAAARSKH 144
MLLVRGLSLLAVGLAAAPTGCALV PTPLPRTTAGGH AAA AR KH
Sbjct: 1 MLLVRGLSLLAVGLAAAPTGCALVPPTPLPRTTAGGH--AAATARGKH 46
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 73.9 |
| Seed ortholog evalue | 2.2e-11 |
| Seed eggNOG ortholog | 2880.D8LNI5 |
| KEGG ko | ko:K09660 |
| EggNOG free text desc. | dolichol-linked oligosaccharide biosynthetic process |
| EggNOG OGs | KOG3211@1,KOG3211@2759 |
| COG Functional cat. | S |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko01003 |
| Hectar predicted targeting category | signal peptide |
| Exons | 1 |
| Model size | 144 |
| Cds size | 144 |
| Stop | 0 |
| Start | 1 |
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig10098.106.1 >prot_E-fasciculatus_F_contig10098.106.1 ID=prot_E-fasciculatus_F_contig10098.106.1|Name=mRNA_E-fasciculatus_F_contig10098.106.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=48bp
MLLVRGLSLLAVGLAAAPTGCALVSPTPLPRTTAGGHSAAAAAARSKH back to topmRNA from alignment at E-fasciculatus_F_contig10098:2361..2504+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig10098.106.1 ID=mRNA_E-fasciculatus_F_contig10098.106.1|Name=mRNA_E-fasciculatus_F_contig10098.106.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=144bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10098:2361..2504+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCTGCTCGTTCGAGGTCTGTCGTTGCTGGCTGTCGGCCTCGCGGCGGC
ACCGACCGGCTGTGCGCTTGTCTCGCCCACGCCGCTGCCTCGGACCACGG
CGGGAGGGCACTCTGCTGCTGCGGCTGCTGCAAGAAGCAAACAT back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig10098:2361..2504+ >mRNA_E-fasciculatus_F_contig10098.106.1 ID=mRNA_E-fasciculatus_F_contig10098.106.1|Name=mRNA_E-fasciculatus_F_contig10098.106.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=288bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10098:2361..2504+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCTGCTCGTTCGAGGTCTGTCGTTGCTGGCTGTCGGCCTCGCGGCGGC
ACCGACCGGCTGTGCGCTTGTCTCGCCCACGCCGCTGCCTCGGACCACGG
CGGGAGGGCACTCTGCTGCTGCGGCTGCTGCAAGAAGCAAACATATGCTG
CTCGTTCGAGGTCTGTCGTTGCTGGCTGTCGGCCTCGCGGCGGCACCGAC
CGGCTGTGCGCTTGTCTCGCCCACGCCGCTGCCTCGGACCACGGCGGGAG
GGCACTCTGCTGCTGCGGCTGCTGCAAGAAGCAAACAT back to top
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