mRNA_E-fasciculatus_F_contig10095.102.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig10095.102.1 vs. uniprot
Match: D8LB33_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB33_ECTSI) HSP 1 Score: 113 bits (282), Expect = 6.860e-22 Identity = 72/178 (40.45%), Postives = 92/178 (51.69%), Query Frame = 3 Query: 405 AESGSKCALGHALCTS--------------------CTTQYVKATLFSQGTVRWDKIVCMGPECTACMGGASVRHCISHELVASIDAAQPKAVPSVGPEHGGGFGRAVGAGAPKFLEHDRASEAAVVELFKPCPKCKVPTEKVGGSDHMTC-VCKHEYYWSCQCVYPTARHV--SCVP 869 + SG++C L H LC + CTTQYV+ TL +GTV WD+I C+ P+C A M G SV+ C+ +L + IDAAQ VP +GPE RA DRAS V KPCP C+V TEK G HM C +C HEY W C+ + T H+ +CVP Sbjct: 694 SSSGTECVLFHELCENMVTDSRXXXXXXXXXXXXADCTTQYVEKTLLPRGTVWWDRIRCVDPDCDAHMVGLSVQRCLGSDLRSRIDAAQLDVVPMIGPEARHERERAA------RTPEDRASATTVATTTKPCPNCEVATEKNKGCKHMVCSMCNHEYCWICRSEW-TPGHLRDTCVP 864
BLAST of mRNA_E-fasciculatus_F_contig10095.102.1 vs. uniprot
Match: A0A4D9DDT2_9STRA (RING-type domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DDT2_9STRA) HSP 1 Score: 64.7 bits (156), Expect = 5.730e-7 Identity = 33/69 (47.83%), Postives = 43/69 (62.32%), Query Frame = 3 Query: 669 GAGAPKFLEH----DRASEAAVVELFKPCPKCKVPTEKVGGSDHMTCV-CKHEYYWSCQCVYPTARHVS 860 GAG ++L DRAS+ V + KPCPKCK PTEK GG +H++C C+HE+ W C+ Y T H S Sbjct: 342 GAGCRRYLRQVKATDRASKTTVRRISKPCPKCKAPTEKNGGCNHISCAQCRHEWCWLCEQRY-TPYHYS 409
BLAST of mRNA_E-fasciculatus_F_contig10095.102.1 vs. uniprot
Match: W7TWG7_9STRA (Ring-finger-containing e3 ubiquitin (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TWG7_9STRA) HSP 1 Score: 63.9 bits (154), Expect = 5.810e-7 Identity = 33/73 (45.21%), Postives = 45/73 (61.64%), Query Frame = 3 Query: 657 GRAVGAGAPKFLEH----DRASEAAVVELFKPCPKCKVPTEKVGGSDHMTCV-CKHEYYWSCQCVYPTARHVS 860 G+ GAG ++L +RAS+ V + KPCPKCK PTEK GG +H++C C+HE+ W C+ Y T H S Sbjct: 131 GKEGGAGCRRYLRQVEATERASKTTVRRISKPCPKCKAPTEKNGGCNHISCAQCRHEWCWLCEQRY-TPYHYS 202
BLAST of mRNA_E-fasciculatus_F_contig10095.102.1 vs. uniprot
Match: A0A074Y604_AURSE (RING-type domain-containing protein n=1 Tax=Aureobasidium subglaciale (strain EXF-2481) TaxID=1043005 RepID=A0A074Y604_AURSE) HSP 1 Score: 57.8 bits (138), Expect = 7.150e-5 Identity = 25/50 (50.00%), Postives = 31/50 (62.00%), Query Frame = 3 Query: 693 EHDRASEAAVVELFKPCPKCKVPTEKVGGSDHMTCV-CKHEYYWSCQCVY 839 E D +S + + KPCPKCKVP EK GG DHMTC C +++ W C Y Sbjct: 280 EEDESSVVLLGTITKPCPKCKVPIEKNGGCDHMTCASCHYQFCWLCSTDY 329 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10095.102.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 4 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig10095.102.1 >prot_E-fasciculatus_F_contig10095.102.1 ID=prot_E-fasciculatus_F_contig10095.102.1|Name=mRNA_E-fasciculatus_F_contig10095.102.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=160bp MTGAESGSKCALGHALCTSCTTQYVKATLFSQGTVRWDKIVCMGPECTACback to top mRNA from alignment at E-fasciculatus_F_contig10095:2..2615+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig10095.102.1 ID=mRNA_E-fasciculatus_F_contig10095.102.1|Name=mRNA_E-fasciculatus_F_contig10095.102.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2614bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10095:2..2615+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10095:2..2615+ >mRNA_E-fasciculatus_F_contig10095.102.1 ID=mRNA_E-fasciculatus_F_contig10095.102.1|Name=mRNA_E-fasciculatus_F_contig10095.102.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=960bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10095:2..2615+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |