mRNA_E-fasciculatus_F_contig10093.99.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig10093.99.1 vs. uniprot
Match: D7FX21_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX21_ECTSI) HSP 1 Score: 373 bits (958), Expect = 1.810e-119 Identity = 203/250 (81.20%), Postives = 207/250 (82.80%), Query Frame = 1 Query: 1 NIAPQLIGKQGQTINKLMKESRAKIVVKPYPDRSGNDVVITGTPNAVKTAKRLVEEFYRSKGCQPTALPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVVEDGAWGGELRQLLRVAGCEHHLERFREDQLDGEVLLMMDRRDFARMGVTEGEQIRILNALKGG----VDDSDEDSDGLDPDHPDTCKICLDALVDILFLPCAHQCTCSRCGSAYEGKPCILCRRVVDKVQRVIKLRG 738
NIAPQLIGKQGQT+NKLMK+SRAKIVVKPYPDRSGNDV+ITGTPNAVKTAKRLVEEFYRSKGCQP+ALP XXXXXXXXXX VVVEDGAWGGELRQLLRVAGCEHHLERFREDQLDGEVLLMMDRRDF RMGVTEGEQIRILNALKG DSDGLDPDHPDTCKICLDALVDILFLPCAHQCTCSRCGSAYEGKPCILCRRVVDKVQRVIKLRG
Sbjct: 774 NIAPQLIGKQGQTVNKLMKDSRAKIVVKPYPDRSGNDVIITGTPNAVKTAKRLVEEFYRSKGCQPSALPPPSSAVAARKAEGARARPAQPVTGGPXXXXXXXXXX-----VVVEDGAWGGELRQLLRVAGCEHHLERFREDQLDGEVLLMMDRRDFERMGVTEGEQIRILNALKGSGGXXXXXXXXDSDGLDPDHPDTCKICLDALVDILFLPCAHQCTCSRCGSAYEGKPCILCRRVVDKVQRVIKLRG 1018
BLAST of mRNA_E-fasciculatus_F_contig10093.99.1 vs. uniprot
Match: A0A6H5JKP4_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKP4_9PHAE) HSP 1 Score: 351 bits (901), Expect = 1.590e-118 Identity = 208/313 (66.45%), Postives = 212/313 (67.73%), Query Frame = 1 Query: 1 NIAPQLIGKQGQTINKLMKESRAKIVVKPYPDRSGNDVVITGTPNAVKTAK---------------------------------------------------------------RLVEEFYRSKGCQPTALPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVVEDGAWGGELRQLLRVAGCEHHLERFREDQLDGEVLLMMDRRDFARMGVTEGEQIRILNALKG----GVDDSDEDSDGLDPDHPDTCKICLDALVDILFLPCAHQCTCSRCGSAYEGKPCILCRRVVDKVQRVIKLRG 738
NIAPQLIGKQGQT++KLMKESRAKIVVKPYPDRSGNDVVITGTPNAVK +K R+ EEFYRSKGCQPTALP XXXXXXXXXXXX VVVEDGAWGGELRQLLRVAGCEHHLERFREDQLDGEVLLMMDRRDF RMGVT GEQIRILNALKG GVDDSDEDSDGLDPDHPDTCKICLDALVDILFLPCAH CTCSRCGSAYEGKPCILCRRVVDKVQRVIKLRG
Sbjct: 52 NIAPQLIGKQGQTVSKLMKESRAKIVVKPYPDRSGNDVVITGTPNAVKVSKSRVLGSTLDCCRGCVRVRCLAIPLYFQAVVVGRCDGVGAGCFVVVVNALSLRHPLQCTRRVTMRVEEEFYRSKGCQPTALPPPSSAVAAARKAEGARARPAQPVTGXXXXXXXXXXXX----VVVEDGAWGGELRQLLRVAGCEHHLERFREDQLDGEVLLMMDRRDFERMGVTVGEQIRILNALKGSGAGGVDDSDEDSDGLDPDHPDTCKICLDALVDILFLPCAHHCTCSRCGSAYEGKPCILCRRVVDKVQRVIKLRG 360
BLAST of mRNA_E-fasciculatus_F_contig10093.99.1 vs. uniprot
Match: A0A6H5J8V2_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8V2_9PHAE) HSP 1 Score: 236 bits (601), Expect = 7.400e-68 Identity = 164/335 (48.96%), Postives = 185/335 (55.22%), Query Frame = 1 Query: 4 IAPQLIGKQGQTINKLMKESRAKIVVKPYPDRSGNDVVITGTPNAVKTAKRLVEEFYRSKGCQPTALPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----------------------------------VVVEDGAW----------GGELRQLLRVAGCEHHLERFREDQLDGEVLLMMDRRDFARMGVTEGEQIRILNALK------------------------------------GGV--------DDSDED--SDGLDPDHPDTCKICLDALVDILFLPCAHQCTCSRCGSAYEGKPCILCRRVVDKVQRVIKLR 735
IA Q+IG+ GQT+N+LMKESRA+IV+KPY D++G+DVVITG+P A TA+RLVE+FYRSKG +PT LP XXXXXXXXXXXXX VV G GGEL QLLR A CEHHLERF DQLDGEVLL M+RRDF RMGVTE EQ RIL+ALK GGV DD DED SDGLDPDHPDTCKIC+DALV ILFLPCAHQCTC RCGS + GKPCI+CR+ V + Q VI+LR
Sbjct: 741 IAGQVIGRGGQTVNRLMKESRARIVLKPYADKTGHDVVITGSPQA--TARRLVEDFYRSKGIEPTHLPPXXXXXXXXXXXXXGRPGGVAPRARLPDPMMPTEAMIGHLGRGRTMAVAGPAAAAAAGMRAPSGAIPQGARPVAQPVVYGGGXXXXXXXXVDVSGGELPQLLRAARCEHHLERFLRDQLDGEVLLEMERRDFDRMGVTEAEQSRILSALKHAGEGXXXXXXXXXXXXXGRRENLAQRVVTVVRGTSGGVATPFEVEDDDVDEDXDSDGLDPDHPDTCKICMDALVGILFLPCAHQCTCVRCGSGFVGKPCIICRQKVTRAQPVIRLR 1073
BLAST of mRNA_E-fasciculatus_F_contig10093.99.1 vs. uniprot
Match: D7FX18_ECTSI (KH domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX18_ECTSI) HSP 1 Score: 155 bits (392), Expect = 1.520e-39 Identity = 125/300 (41.67%), Postives = 148/300 (49.33%), Query Frame = 1 Query: 4 IAPQLIGKQGQTINKLMKESRAKIVVKPYPDRSGNDVVITGTPNAVKTAKRLVEEFYRSKGCQPTALPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXV----------------------VVEDGA------------WGG---------------ELRQLLRVAGCEHHLERFREDQLDGEVLLMMDRRDFARMGVTEGEQIRILNALKGGVDDSD-----------------------------------------ED------SDGLDPDHPDTCKICLDALVDI 615
IA Q+IG+ GQT+N+LMKESRA+IV+K Y D++G+DVVITG+P AV T +RLVE+FYRSKG +PT L XXXXXXXXXXXXX + + GA +GG EL QLLR A CEHHLERF+ DQLDGEVLL M+RR+F RMGVTE EQ RI++ALK D ED SDGLDPDHPDTCKIC+DALV +
Sbjct: 595 IAGQVIGRGGQTVNRLMKESRARIVLKTYADKTGHDVVITGSPQAVLTGRRLVEDFYRSKGIEPTLLQPPSXXXXXXXXXXXXXGRPGGVAPRARLPDPMMPTEAMIGHLGRGRTMAGAGPAAAVGMRAPSGAIPQGARPVAQXXXXXXMFGGXXXXXXXXXVDVSGVELPQLLRAARCEHHLERFKRDQLDGEVLLEMERREFDRMGVTEAEQGRIMSALKHAGDGXXXXXXXXXXXXXXXXXXRENSAQRVAAVVRGASGVMATPVEVEDXXXXXXSDGLDPDHPDTCKICMDALVGL 894
BLAST of mRNA_E-fasciculatus_F_contig10093.99.1 vs. uniprot
Match: F6PS87_CIOIN (RING-type domain-containing protein n=2 Tax=Ciona intestinalis TaxID=7719 RepID=F6PS87_CIOIN) HSP 1 Score: 57.8 bits (138), Expect = 5.640e-6 Identity = 30/98 (30.61%), Postives = 46/98 (46.94%), Query Frame = 1 Query: 499 IRILNALKGGVDDSDEDSDGLDPDHPDT---------------------------CKICLDALVDILFLPCAHQCTCSRCGSAYEGKPCILCRRVVDK 711
+ I++A+ G D SD++ ++ D P T CK+CLD + DI+F+PC H CTC C SA C +CR+ ++K
Sbjct: 614 VSIIDAMNDGTDSSDDE---MEADEPQTQTPMSISDLDLSPSMLARVAELEEERKCKVCLDKMADIVFIPCGHLCTCIECASALNK--CPICRKRIEK 706
BLAST of mRNA_E-fasciculatus_F_contig10093.99.1 vs. uniprot
Match: A0A8B8ADR3_CRAVI (death-associated inhibitor of apoptosis 2-like n=1 Tax=Crassostrea virginica TaxID=6565 RepID=A0A8B8ADR3_CRAVI) HSP 1 Score: 56.2 bits (134), Expect = 1.330e-5 Identity = 25/49 (51.02%), Postives = 32/49 (65.31%), Query Frame = 1 Query: 583 CKICLDALVDILFLPCAHQCTCSRCGSAYEGKPCILCRRVVDKVQRVIK 729
CKIC+DA +DILFLPC H CTC C A + + C +C+ + QRV K
Sbjct: 305 CKICMDAEMDILFLPCGHLCTCRTC--AIKLRECPVCKERIQNQQRVYK 351
BLAST of mRNA_E-fasciculatus_F_contig10093.99.1 vs. uniprot
Match: F6PRR9_CIOIN (RING-type domain-containing protein n=1 Tax=Ciona intestinalis TaxID=7719 RepID=F6PRR9_CIOIN) HSP 1 Score: 55.1 bits (131), Expect = 4.280e-5 Identity = 21/43 (48.84%), Postives = 29/43 (67.44%), Query Frame = 1 Query: 583 CKICLDALVDILFLPCAHQCTCSRCGSAYEGKPCILCRRVVDK 711
CK+CLD + DI+F+PC H CTC C SA C +CR+ ++K
Sbjct: 573 CKVCLDKMADIVFIPCGHLCTCIECASALNK--CPICRKRIEK 613
BLAST of mRNA_E-fasciculatus_F_contig10093.99.1 vs. uniprot
Match: H2Z945_CIOSA (RING-type domain-containing protein n=1 Tax=Ciona savignyi TaxID=51511 RepID=H2Z945_CIOSA) HSP 1 Score: 49.3 bits (116), Expect = 9.130e-5 Identity = 22/49 (44.90%), Postives = 30/49 (61.22%), Query Frame = 1 Query: 583 CKICLDALVDILFLPCAHQCTCSRCGSAYEGKPCILCRRVVDKVQRVIK 729
CKICLD + +I+F+PC H C CS C K C +CR DK++ + K
Sbjct: 8 CKICLDRVSNIVFVPCGHLCCCSECADGM--KKCPICR---DKIREMYK 51 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10093.99.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 8 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig10093.99.1 >prot_E-fasciculatus_F_contig10093.99.1 ID=prot_E-fasciculatus_F_contig10093.99.1|Name=mRNA_E-fasciculatus_F_contig10093.99.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=247bp NIAPQLIGKQGQTINKLMKESRAKIVVKPYPDRSGNDVVITGTPNAVKTAback to top mRNA from alignment at E-fasciculatus_F_contig10093:37..2087+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig10093.99.1 ID=mRNA_E-fasciculatus_F_contig10093.99.1|Name=mRNA_E-fasciculatus_F_contig10093.99.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2051bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10093:37..2087+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10093:37..2087+ >mRNA_E-fasciculatus_F_contig10093.99.1 ID=mRNA_E-fasciculatus_F_contig10093.99.1|Name=mRNA_E-fasciculatus_F_contig10093.99.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1482bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10093:37..2087+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |