mRNA_E-fasciculatus_F_contig1009.95.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1009.95.1 vs. uniprot
Match: D7G731_ECTSI (Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G731_ECTSI) HSP 1 Score: 635 bits (1638), Expect = 1.230e-224 Identity = 377/409 (92.18%), Postives = 385/409 (94.13%), Query Frame = 1 Query: 1 MDTDDVQHRAQDKDNEARRIKRQLEVAERRVKNSLYINEAHESLAAKANEREKEANARAAELGRRLDRALEKLESIERKDMILNLETSCARDEEQTFFAEQELRAHQMDPELYLPVNTAKRRQVARSEKRLHRLRLRHESQSAALSQAQATERLHADLRRAAGLGDIPQTMKCLDSGISVNVPDQSGLSAFLYACGQANADLVQILVDAGGDVLDGDGTITGLIIAARKGTSGXXXXXXXXXXXVCARDSAGGTALHAATLHRHVNVXXXXXXXXXXXXXXXXXXXXXXXMLASVSSGKNGGGDGKGGETGAEVAGLLLEWGASADIKNAKGLTPISAALDTRNRAMVLAYREFFGEDSGLAAVDADFDVESNRSDTTPATDNGRLPPERSKGATAVASPTRERNTFSA 1227
MDTDD +HRA DKDNEARRIKRQLEVAERRVKNS YINEAHESLAAKA EREKEANARAAELGRRLDRALEKLESIERKDMILNLETSCARDEEQTFFAE+ELRAHQMDPELYLPVNTAKRRQVARSEKRL RLRLRHESQSAALSQAQATERLHADLRRAAGLGDIPQTMKCLDSGISVNVPDQSGLSAFLYACGQANA+LVQILVDAGGDVLDGDGTITGLIIAARKGT G VCARDSAGGTALHAATLHRHV+ XXXXXXXXXXXXXXXXXXXXXXXMLASVSSGK+GG D +GGETGA+VAGLLLEWGASADIKN+KGLTPISAALDTRNRAMVLAYREFFGEDSGLAAVDADFDVESNRSDTTPATDNGRLPPE K ATAVA PTRERNTFSA
Sbjct: 157 MDTDDGRHRALDKDNEARRIKRQLEVAERRVKNSFYINEAHESLAAKATEREKEANARAAELGRRLDRALEKLESIERKDMILNLETSCARDEEQTFFAERELRAHQMDPELYLPVNTAKRRQVARSEKRLRRLRLRHESQSAALSQAQATERLHADLRRAAGLGDIPQTMKCLDSGISVNVPDQSGLSAFLYACGQANAELVQILVDAGGDVLDGDGTITGLIIAARKGTMGVVQTLLEAGADVCARDSAGGTALHAATLHRHVDXXXXXXXXXXXXXXXXXXXXXXXXMLASVSSGKDGGSDVRGGETGADVAGLLLEWGASADIKNSKGLTPISAALDTRNRAMVLAYREFFGEDSGLAAVDADFDVESNRSDTTPATDNGRLPPESPKKATAVADPTRERNTFSA 565
BLAST of mRNA_E-fasciculatus_F_contig1009.95.1 vs. uniprot
Match: A0A7R9VLG3_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VLG3_9STRA) HSP 1 Score: 80.1 bits (196), Expect = 6.790e-14 Identity = 64/191 (33.51%), Postives = 92/191 (48.17%), Query Frame = 1 Query: 472 LRRAAGLGDIPQTMKCLDSGISVNVPDQSGLSAFLYACGQANADLVQILVDAGGDVLDGDGTITGLIIAARKGTSGXXXXXXXXXXXVCARDSAGGTALHAATLHRHVNVXXXXXXXXXXXXXXXXXXXXXXXMLASVSSGKNGGGDGKGGETGAEVAGLLLEWGASADIKNAKGLTPISAALDTRNRAMV 1044
+R+A+ GD + ++ G+SVNVPD++G SAF YACG + D V+++V + D+ D DG T LI A R G + V +RD G TAL A +V+ XXXX + DG+ E+A LLL+ GA A KNA G+TP+ A R++ +V
Sbjct: 1 MRQASSRGDTKCIKQLMEQGVSVNVPDKAGFSAFKYACGGGHLDAVRLMVQSA-DLNDADGRTTALIAATRNGHAPVVRFLLEEGADVESRDDGGNTALLIACAGGYVDCARALXXXXKKGGRRGGGADPNAANAVGNAGLHLCARDGR-----EEIASLLLDRGAEAGAKNASGMTPMEIAKARRHQGVV 185 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1009.95.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1009.95.1 >prot_E-fasciculatus_F_contig1009.95.1 ID=prot_E-fasciculatus_F_contig1009.95.1|Name=mRNA_E-fasciculatus_F_contig1009.95.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=410bp MDTDDVQHRAQDKDNEARRIKRQLEVAERRVKNSLYINEAHESLAAKANEback to top mRNA from alignment at E-fasciculatus_F_contig1009:17298..19020+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1009.95.1 ID=mRNA_E-fasciculatus_F_contig1009.95.1|Name=mRNA_E-fasciculatus_F_contig1009.95.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1723bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1009:17298..19020+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1009:17298..19020+ >mRNA_E-fasciculatus_F_contig1009.95.1 ID=mRNA_E-fasciculatus_F_contig1009.95.1|Name=mRNA_E-fasciculatus_F_contig1009.95.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2460bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1009:17298..19020+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |