mRNA_E-fasciculatus_F_contig10088.93.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig10088.93.1 vs. uniprot
Match: D7FVR6_ECTSI (Guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVR6_ECTSI) HSP 1 Score: 252 bits (643), Expect = 6.280e-77 Identity = 128/133 (96.24%), Postives = 129/133 (96.99%), Query Frame = 1 Query: 1 QVFVFGPDRKIWELDKGSATAGDALGRSYMQKFYEGALLHDRRNIKSDAKGQRAKRKTRTAWVNGREVDASYLLKNGDVFDVAQASHQAPEDVSQDASGKQPSAKDGKPRNPAEERSSSSWRALSAPPTRGLT 399
+VFVFGPDRKIWELDKGSATAGDALGRSYMQKFYEGALLHDRR IKSDAKGQ AKRKTRTAWVNGREVDASYLLKNGDVFDVAQASHQAPED SQDASGKQPSAKDGKPRNPAEE SSSSWRALSAPPTRGLT
Sbjct: 670 KVFVFGPDRKIWELDKGSATAGDALGRSYMQKFYEGALLHDRRKIKSDAKGQGAKRKTRTAWVNGREVDASYLLKNGDVFDVAQASHQAPEDASQDASGKQPSAKDGKPRNPAEESSSSSWRALSAPPTRGLT 802
BLAST of mRNA_E-fasciculatus_F_contig10088.93.1 vs. uniprot
Match: A0A6H5KUK5_9PHAE (RelA_SpoT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUK5_9PHAE) HSP 1 Score: 211 bits (537), Expect = 1.010e-61 Identity = 124/198 (62.63%), Postives = 125/198 (63.13%), Query Frame = 1 Query: 1 QVFVFGPDRKIWELDKGSATAGDALGRSYMQKFYEGALLHDRRNIKSDAKGQRAKRKTRTAWVNGREV------------------------------------------------------------------DASYLLKNGDVFDVAQASHQAPEDVSQDASGKQPSAKDGKPRNPAEERSSSSWRALSAPPTRGL 396
+VFVFGPDRKIWELDKGSATAGDALGRSYMQKFYEGALLHDRRNIKS AKGQ AKRKTRTAWVNGREV DASYLLKNGDVFDVAQ SHQAPED SQDAS KQPSAKDGK RNPAEE SSSSWRALSAPPTRGL
Sbjct: 587 KVFVFGPDRKIWELDKGSATAGDALGRSYMQKFYEGALLHDRRNIKSGAKGQGAKRKTRTAWVNGREVCAVISITVPEISAREYIRKHLHFTLCHVLSGRFLSLPRQCPLLGDGFEDVLFFFTICECGQFVHHVDASYLLKNGDVFDVAQTSHQAPEDSSQDASEKQPSAKDGKRRNPAEESSSSSWRALSAPPTRGL 784 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10088.93.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig10088.93.1 >prot_E-fasciculatus_F_contig10088.93.1 ID=prot_E-fasciculatus_F_contig10088.93.1|Name=mRNA_E-fasciculatus_F_contig10088.93.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=136bp QVFVFGPDRKIWELDKGSATAGDALGRSYMQKFYEGALLHDRRNIKSDAKback to top mRNA from alignment at E-fasciculatus_F_contig10088:3790..4759- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig10088.93.1 ID=mRNA_E-fasciculatus_F_contig10088.93.1|Name=mRNA_E-fasciculatus_F_contig10088.93.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=970bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10088:3790..4759- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10088:3790..4759- >mRNA_E-fasciculatus_F_contig10088.93.1 ID=mRNA_E-fasciculatus_F_contig10088.93.1|Name=mRNA_E-fasciculatus_F_contig10088.93.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=816bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10088:3790..4759- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |