mRNA_E-fasciculatus_F_contig10081.90.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig10081.90.1 vs. uniprot
Match: A0A6H5K1B4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1B4_9PHAE) HSP 1 Score: 170 bits (430), Expect = 1.740e-44 Identity = 130/226 (57.52%), Postives = 134/226 (59.29%), Query Frame = 1 Query: 1 DAEPGAGGGWLDFRAVYARHGVTKLVEQYRADSLRSAGAGAEQPPSPSAXXXXXXXXXXXXXXXTTAVVKRDGPAA-TGIANGASTPGETAAPAAXXXXXXXXXXXXXXXXXXXXXTKSXXLSSSLIATGGSSXXXXXXXXXXXXXXXXXECNAVLAKLAAVASRLHPESFPPATPP-PSSCSSLALVVSTPPPLSGDGGVASVPSAEV-VWKGKGKLAAGPHAAA 669
DAE GAGG WLDFRAVYARHGVTKLVEQYRAD LR GAGA Q P A TTAVVKRD PAA +GIANGAST A AA + S SSSLIATG S ECNAVLAKLA VASRLHPESFPP T PSS SS A+VVS P PLSGDGG + VPSAE VWKGKGKLA GP AAA
Sbjct: 50 DAEQGAGGVWLDFRAVYARHGVTKLVEQYRADKLRGVGAGAGQLP---AVAGDSAAGAAVASESTTAVVKRDRPAAASGIANGASTV-VAVAEAAGGAGLSSGVNSGANVNRTTSSSLSLLSSSSLIATGCSGAAAENGDSRG-------ECNAVLAKLAEVASRLHPESFPPRTTTLPSSSSSRAMVVSAP-PLSGDGGASLVPSAEERVWKGKGKLA-GPGAAA 262
BLAST of mRNA_E-fasciculatus_F_contig10081.90.1 vs. uniprot
Match: D7FHF4_ECTSI (Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHF4_ECTSI) HSP 1 Score: 139 bits (350), Expect = 9.720e-34 Identity = 135/225 (60.00%), Postives = 140/225 (62.22%), Query Frame = 1 Query: 1 DAEPGAGGGWLDFRAVYARHGVTKLVEQYRADSLRSAGAGAEQPPSPSAXXXXXXXXXXXXXXXTTAVVKRDGPAA-TGIANGASTPGETAAPAAXXXXXXXXXXXXXXXXXXXXXTKSXXLSSSLIATGGSSXXXXXXXXXXXXXXXXXECNAVLAKLAAVASRLHPESFPPATPPPSSCSSLALVVSTPPPLSGDGGVASVPSAEV-VWKGKGKLAAGPHAAA 669
DAE GAGG WLDFRAVYARHGVTKL EQYRAD+LR GA A QPPS + XXXXXXXXXX AVVKRDG AA TGIANGAST XXXXX + SSSLIATG S XXXXXXXXX ECNAVL KLA VASRLHPESFPP T V + PP SGDGG V SAE +WKGKGKLA GP AA
Sbjct: 518 DAEEGAGGVWLDFRAVYARHGVTKLAEQYRADNLRRWGASAGQPPSVAGDSGAXXXXXXXXXXI--AVVKRDGSAAATGIANGASTXXXXXXXXXGLSSGVNPGAXXXXXTSLSLLSSP---SSSLIATG-CSGAXXXXXXXXXNGGSGGECNAVLDKLAEVASRLHPESFPPRTTXXXXXXXXXXXVVSAPPRSGDGGAPLVHSAEEGLWKGKGKLA-GPDPAA 735 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10081.90.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig10081.90.1 >prot_E-fasciculatus_F_contig10081.90.1 ID=prot_E-fasciculatus_F_contig10081.90.1|Name=mRNA_E-fasciculatus_F_contig10081.90.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=258bp DAEPGAGGGWLDFRAVYARHGVTKLVEQYRADSLRSAGAGAEQPPSPSAAback to top mRNA from alignment at E-fasciculatus_F_contig10081:3251..4775- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig10081.90.1 ID=mRNA_E-fasciculatus_F_contig10081.90.1|Name=mRNA_E-fasciculatus_F_contig10081.90.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1525bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10081:3251..4775- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10081:3251..4775- >mRNA_E-fasciculatus_F_contig10081.90.1 ID=mRNA_E-fasciculatus_F_contig10081.90.1|Name=mRNA_E-fasciculatus_F_contig10081.90.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1548bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10081:3251..4775- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |