mRNA_E-fasciculatus_F_contig10075.84.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
|
Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig10075.84.1 vs. uniprot
Match: D7G0I0_ECTSI (Rtdr1 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0I0_ECTSI) HSP 1 Score: 212 bits (539), Expect = 4.670e-63 Identity = 119/137 (86.86%), Postives = 122/137 (89.05%), Query Frame = 1 Query: 28 GYPARLVDKAVNETEELQPLALRVLCNVTKDRGGLEAALAASLVENLIGLLTEGRPAEVQREASVTLAIACFDDMAKIIAIQNNGVSMLAELVATAETDVRSAAMGALMMITTVDAGKRAILSTSAAEESVKALGER 438
GYPARLVDKAVNETEELQPLALRVLCNVTK RGGLEAALAASLVENLIGLLTEGRP EVQREASVTLAIACFDDMAKIIAIQNNGVSMLAELV+ AETDVRSAAMGALMMITTVDAG+ STS + AL R
Sbjct: 157 GYPARLVDKAVNETEELQPLALRVLCNVTKHRGGLEAALAASLVENLIGLLTEGRPVEVQREASVTLAIACFDDMAKIIAIQNNGVSMLAELVSKAETDVRSAAMGALMMITTVDAGE----STSTSPRRTAALTNR 289
BLAST of mRNA_E-fasciculatus_F_contig10075.84.1 vs. uniprot
Match: A0A7S1XJA5_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XJA5_9STRA) HSP 1 Score: 142 bits (358), Expect = 1.340e-35 Identity = 83/202 (41.09%), Postives = 117/202 (57.92%), Query Frame = 1 Query: 16 LVDAGYPARLVDKAVNETEELQPLALRVLCNVTKDRGGLEAALAASLVENLIGLLTEGRPAEVQREASVTLAIACFDDMAKIIAIQNNGVSMLAELVATAETDVRSAAMGALMMITTVDAGKRAILSTSAAEESVKALGERDDVLLLNALKLIASIAAHPDIRAELKEDTACLPAIRRLQASADPMIEKHASIALEAVLWEP 621
+V+ GYPA+LV KA E ++PL L++L N+ KD GL L VE GLL G +V+ EA+ TL CF +AK AI V L ++ VR+AA ALM+IT D GK+A L + + LG+ + ++ LNALK++AS+A HP++RA D +CL + L S D ++ KHA +A +AVLWEP
Sbjct: 153 MVNVGYPAQLVTKAAKELASVKPLVLKLLRNLLKDERGLNIVLDNEGVETCHGLLRHGEE-DVRTEAAQTLGFMCFAGLAKATAIGCGAVGRLVTILVDKSWRVRAAAAYALMVITIDDEGKKAFLPAGGVQPLLALLGDEEKLVRLNALKVMASVAVHPEVRAGFLADESCLERLEALTQSPDTLLAKHAIVAKDAVLWEP 353
BLAST of mRNA_E-fasciculatus_F_contig10075.84.1 vs. uniprot
Match: A0A836CN86_9STRA (Rtdr1 protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN86_9STRA) HSP 1 Score: 120 bits (300), Expect = 8.960e-28 Identity = 78/150 (52.00%), Postives = 94/150 (62.67%), Query Frame = 1 Query: 4 GTRALVDAGYPARLVDKAVNETEELQPLALRVLCNVTKDRGGLEAALAASLVENLIGLLTEGRPAE----------------VQREASVTLAIACFDDMAKIIAIQNNGVSMLAELVATAETDVRSAAMGALMMITTVDAGKRAILSTSA 405
GTRALV AGYP RLV KA +ET+ L+P L VLCNV R G+EAALAAS VE L+ LL G PA V R A+ L CF ++ KI+AIQ +GV+ LA L+ + V +AA+GALM ITTVDAGKRA L+T A
Sbjct: 147 GTRALVHAGYPERLVAKARDETDALKPAVLDVLCNVVHCREGVEAALAASAVEALVELL--GGPAXXXXXXXXXXXXXXXXXVLRGAAAALRELCFSEIGKIVAIQCDGVARLAALLRCGDAGVHAAALGALMTITTVDAGKRAFLATGA 294
BLAST of mRNA_E-fasciculatus_F_contig10075.84.1 vs. uniprot
Match: A0A8J2WTP0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WTP0_9STRA) HSP 1 Score: 116 bits (291), Expect = 5.300e-26 Identity = 82/215 (38.14%), Postives = 114/215 (53.02%), Query Frame = 1 Query: 4 GTRALVDAGYPARLVDKAVNETEELQPLALRVLCNVTKDRGGLEAALAASLVENLIGLLTEGRPAEVQREASVTLAIACFDDMAKIIAIQNNGVSMLAELVATAETDVRSAAMGALMMITTVDAGKRAILSTSAA-EESVKALGERDDV----LLLNALKLIASIAAHPDIRAELKEDTACLPAIRRLQASA----DPMIEKHASIALEAVLWEP 621
G ++V AGYP LV+KA E+ LQP AL +L + + GL AL A + + LL A V+ A LA CFD AK A++ + V L L+ + R AA AL+ +TT D GKR ++ ++V A+ L A KL+A++A HP +RA+L+ED CLPAI L A D ++ +HA IA +AVLWEP
Sbjct: 144 GASSIVAAGYPKALVEKAEKESVGLQPRALDLLTSCLGNEQGLAEALDAGGIATCLSLLGS-MEAAVRAAAGRCLAGLCFDMSAKDAAVEADAVDTLCALLEDPDLGARRAACAALVSVTTTDEGKRRMVPAEPRPRDAVAAIXXXXXXXXAYLTTTACKLVANVAVHPKVRAQLREDKECLPAIDALIAGPGTDQDALVAQHARIAKDAVLWEP 357
BLAST of mRNA_E-fasciculatus_F_contig10075.84.1 vs. uniprot
Match: A0A7S3UQ37_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UQ37_HETAK) HSP 1 Score: 97.8 bits (242), Expect = 3.780e-21 Identity = 54/136 (39.71%), Postives = 79/136 (58.09%), Query Frame = 1 Query: 214 ASVTLAIACFDDMAKIIAIQNNGVSMLAELVATAETDVRSAAMGALMMITTVDAGKRAILSTSAAEESVKALGERDDVLLLNALKLIASIAAHPDIRAELKEDTACLPAIRRLQASADPMIEKHASIALEAVLWEP 621
A+ LA CF +MAK+ AIQ++GV L EL+ + ++R+AA+GALM +TTVD GK+A++ LNA+K +A++AA P IR ED A L A+ L+ D ++ +HA +A VLW P
Sbjct: 1 AARALARLCFAEMAKVTAIQHDGVDTLVELLRDPDAEIRAAALGALMGVTTVDEGKKAMVPAGXXXXXXXXXXXXXXXXXLNAVKTVANVAAFPTIRQAYMEDPAALKALTLLERGEDDLLARHAGVAKRVVLWTP 136
BLAST of mRNA_E-fasciculatus_F_contig10075.84.1 vs. uniprot
Match: A0A7S2V2I4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2I4_9STRA) HSP 1 Score: 88.2 bits (217), Expect = 7.780e-18 Identity = 49/114 (42.98%), Postives = 72/114 (63.16%), Query Frame = 1 Query: 280 GVSMLAELVATAETDVRSAAMGALMMITTVDAGKRAILSTSAAEESVKALGERDDVLLLNALKLIASIAAHPDIRAELKEDTACLPAIRRLQASADPMIEKHASIALEAVLWEP 621
GV +L L++ +RSAA GALM+ITTV+ GK +L+T V L + ++ LN LK+I+SIAAHP+IR ++D CL + L+ S D ++ KHA++A + VLW P
Sbjct: 2 GVGVLVHLLSDEAHQIRSAAAGALMLITTVEQGKDDMLATDGPAVIVDLLTDDQRLVKLNCLKVISSIAAHPEIREIYQKDQNCLERLGTLEKSDDELLSKHAAVAKQVVLWAP 115
BLAST of mRNA_E-fasciculatus_F_contig10075.84.1 vs. uniprot
Match: A0A7S1GE52_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GE52_9STRA) HSP 1 Score: 87.4 bits (215), Expect = 1.390e-15 Identity = 73/210 (34.76%), Postives = 108/210 (51.43%), Query Frame = 1 Query: 4 GTRALVDAGYPARLVDKAVNETEEL-QPLALRVLCNVTK--DRGGLEAAL-AASLVENLIGLLTEGRPAEVQREASVTLAIACFDDMAKIIAIQNNGVSMLAELVATAETDVRSAAMGALMMITTVDAGKRAILSTSAAEESVKALGERDDVLLLNALKLIASIAAHPDIRAELKEDTACLPAIRRLQASADPMIEKHASIALEAVLWEP 621
G V GY A+LVD A + E Q LALRVL + GL AAL + I LL +G AEV+ A+ +A F D K AI+ V+ L L A R+ A GALM+I + GK A+++ + + LG+ + V LNA++ +A++AAHP RA+L+E L + R++ + ++ + A A+ AV W P
Sbjct: 149 GAGDAVKHGYVAQLVDSAATDDESAAQELALRVLAKAVDAPEGKGLAAALEGGDTMRVCIALLDDG-VAEVRAAAARVVATLAFADEGKKQAIEGGAVAPLIGLAEDALDAARAEAGGALMLIVVDNKGKEALIAAGLSG-LIALLGDANTVCQLNAMRTVATVAAHPRARAQLQE-LDVLEHLHRIRDDGNALLRRCAETAIRAVEWTP 355
BLAST of mRNA_E-fasciculatus_F_contig10075.84.1 vs. uniprot
Match: A0A7S3UQ66_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UQ66_HETAK) HSP 1 Score: 73.6 bits (179), Expect = 1.210e-12 Identity = 38/98 (38.78%), Postives = 59/98 (60.20%), Query Frame = 1 Query: 328 RSAAMGALMMITTVDAGKRAILSTSAAEESVKALGERDDVLLLNALKLIASIAAHPDIRAELKEDTACLPAIRRLQASADPMIEKHASIALEAVLWEP 621
++AA+GALM +TTVD GK+A++ + L + ++ LNA+K +A++AA P IR ED A L A+ L+ D ++ +HA +A VLW P
Sbjct: 6 QAAALGALMGVTTVDEGKKAMVPAGGVPMLITLLSDPSRLVRLNAVKTVANVAAFPTIRQAYMEDPAALKALTLLERGEDDLLARHAGVAKRVVLWTP 103
BLAST of mRNA_E-fasciculatus_F_contig10075.84.1 vs. uniprot
Match: A0A7S0WVF0_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0WVF0_9CHLO) HSP 1 Score: 67.0 bits (162), Expect = 1.340e-8 Identity = 52/157 (33.12%), Postives = 87/157 (55.41%), Query Frame = 1 Query: 64 ETEELQPLALRVLC-NVTKDRGGLEAAL-AASLVENLIGLLTEGRPAEVQREASVTLAIAC--FDDMAKIIAIQNNGVSMLAELVATAETDVRSAAMGALMMITTVDAGKRAILSTSAAEESVKALGER-DDVLLLNALKLIASIAAHPDIRAELKE 519
++ LQ L L C V + LE + AS + L+GLL++G+PA++Q +A+ L + F+D AKI+A+Q V L L+ + + + SAA ALM IT GK A++ T E++ A +R + L +N +++I ++A P+ R L +
Sbjct: 183 QSRALQGLVLLNACVQVLHNNHALEQLIDKASAINALVGLLSQGKPADIQEQAAQLLGVLTSRFED-AKIVAVQEGAVPKLLALLPSEQVHLASAAATALMTITVSRDGKYAVIKTPGGLEALVAKLDRVREQLCVNVMEVITNVAEAPEARPVLAQ 338
BLAST of mRNA_E-fasciculatus_F_contig10075.84.1 vs. uniprot
Match: A0A7S3EZY1_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3EZY1_9EUKA) HSP 1 Score: 59.7 bits (143), Expect = 1.990e-6 Identity = 58/232 (25.00%), Postives = 106/232 (45.69%), Query Frame = 1 Query: 4 GTRALVDAGYPARLVDKAVNETEE------LQPLALRVLCNVTKDRGGLEAALAASLVENLIGLLTEGRPAEVQREASVTLAIACFDDMAKIIAIQNNGVSMLAELVAT-AETDVRSAAMGALMMITT---------------VDAGKR----AILSTSAAEESVKALGERDDVLLLNALKLIASIAAHPDIRAELKEDTACLPAIRRLQASADPMIEKHASIALEAVLWEP 621
G RAL++ G+ +V + T+ +Q AL L + ++ G A+ +E + +LT G E++ +A+ LA+ K +A++ + L ++ T T+V++AA ALM +T V+AG +L + E + + + L + K +A+IA P R +L+ C+ + L ++P++ KHA IA+E V W+P
Sbjct: 64 GMRALIEIGFVKVIVGRCRKATDGGAPNPVVQKAALMALRQICQNDFGYMEAIECGAIETAVFILTNGDD-EMRIQAAYCLAVLTGGQQEKSVALKEGIMESLVMMLHTNMTTEVKTAAAAALMSMTNGTRFPNGDNACKASAVNAGAIDALIPLLQSGIQLELQQGIKHTNSALTVYVTKCMANIADAPKGRKQLQ---GCVDDLEALSKVSEPLLRKHALIAIERVTWKP 291 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10075.84.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 10 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig10075.84.1 >prot_E-fasciculatus_F_contig10075.84.1 ID=prot_E-fasciculatus_F_contig10075.84.1|Name=mRNA_E-fasciculatus_F_contig10075.84.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=125bp MAKIIAIQNNGVSMLAELVATAETDVRSAAMGALMMITTVDAGKRAILSTback to top mRNA from alignment at E-fasciculatus_F_contig10075:1060..4828- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig10075.84.1 ID=mRNA_E-fasciculatus_F_contig10075.84.1|Name=mRNA_E-fasciculatus_F_contig10075.84.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3769bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10075:1060..4828- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10075:1060..4828- >mRNA_E-fasciculatus_F_contig10075.84.1 ID=mRNA_E-fasciculatus_F_contig10075.84.1|Name=mRNA_E-fasciculatus_F_contig10075.84.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=750bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10075:1060..4828- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |