mRNA_E-fasciculatus_F_contig10073.81.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig10073.81.1 vs. uniprot
Match: A0A6H5KN29_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN29_9PHAE) HSP 1 Score: 336 bits (862), Expect = 5.280e-109 Identity = 208/304 (68.42%), Postives = 216/304 (71.05%), Query Frame = 1 Query: 1 VHRRNLRLAPGLSAAGFSEDPNQCPGTTVDRGGAGEGGDTGDDTRDDQTFAALKSLSRSGGXXXXXXXXXXXXXXXXL----GCPXXXXXXXXXXXXXXXXXXXXXXXXXXXXISTDTLSVAESAAGVTELEDQEAATAARLRRLWAQQAMVVGPESGSHGLSGXXXXXXXXXLLLHACAGPGTFLAVRQALEEGVAEPVGGGGAGGDGDRTGVGCTVGGGTTVAALGSLRQHGAYCVVELGMPTTMRPGRRSGNGXXXXGRAKDGWSVASVAFGRVEAVDGDPEAQREKLARRATGSYVLNFE 900
V RRNLRLAPGLSAAGFSEDPNQ PG TV GAGEGG GDDT +DQTFAALKSLSRSGG L G P DTL+VAE AAG T LEDQ AATAARLR LW +QAMVVGPESG GL XXXXXXXXLLLHACAGPGTFLAVR+ALEEG AEPVGGGGAGGDGD GVGC VGGG TVAALGSLRQHGAYCVVEL MPT + PG RSGN G AK+GWSVASVAFGRVEA DGDPEA+REKLARRATGS+VLNFE
Sbjct: 62 VLRRNLRLAPGLSAAGFSEDPNQWPGNTV---GAGEGGGAGDDTPEDQTFAALKSLSRSGGKKGAGKAAPVPPESVILLTRLGGPQRPGAGAGGAGANVSSADTPPVSNSNN--DQDTLNVAEGAAGPTALEDQAAATAARLRLLWTEQAMVVGPESGPRGLEEGXXXXXXXXLLLHACAGPGTFLAVREALEEGGAEPVGGGGAGGDGDCAGVGCRVGGGATVAALGSLRQHGAYCVVELDMPTPVPPGPRSGNESGGVG-AKEGWSVASVAFGRVEAADGDPEAEREKLARRATGSFVLNFE 359
BLAST of mRNA_E-fasciculatus_F_contig10073.81.1 vs. uniprot
Match: D8LDA8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDA8_ECTSI) HSP 1 Score: 327 bits (839), Expect = 1.170e-103 Identity = 213/306 (69.61%), Postives = 224/306 (73.20%), Query Frame = 1 Query: 1 VHRRNLRLAPGLSAAGFSEDPNQCPGTTVDRGGAGEGGD-TGDDTRDDQTFAALKSLSRSGGXXXXXXXXXXXXXXXXL----GCPXXXXXXXXXXXXXXXXXXXXXXXXXXXXISTDTLSVAESAAGVTELEDQEAATAARLRRLWAQQAMVVGPESGSHGLSGXXXXXXXXXLLLHACAGPGTFLAVRQALEEGVAEPVGGGGAGGDGD-RTGVGCTVGGGTTVAALGSLRQHGAYCVVELGMPTTMRPGRRSGNGXXXXGRAKDGWSVASVAFGRVEAVDGDPEAQREKLARRATGSYVLNFE 900
V RRNLRLAPGLSAAGFSEDPNQCPG TV GAGEGG GDDT +DQTFAALKSLSRSGG L G P XXXXXXXXXXXXXX + DTL+VA+ AAG TE+EDQEAATAARLR LW + AM VGPESG GL LLLHACAGPGT LAVR+ALEEG AEPVGGGGAGGDGD GVGC VGGGTTVAALGSLRQHGAYCVVEL MP T+ PG RSGNG G AK+GWSVASVAFGRVEA DGDPEA+REKLA RATGS+VLNFE
Sbjct: 203 VLRRNLRLAPGLSAAGFSEDPNQCPGNTV---GAGEGGGGAGDDTPEDQTFAALKSLSRSGGKKGAGKAAPVPPESVILLTRLGGPRRPGXXXXXXXXXXXXXXTPPTSNSNS--NQDTLNVAKRAAGPTEVEDQEAATAARLRLLWTEPAMAVGPESGPRGLE----DGGGGGLLLHACAGPGTLLAVREALEEGGAEPVGGGGAGGDGDCARGVGCRVGGGTTVAALGSLRQHGAYCVVELDMPATVPPGPRSGNGSGGVG-AKEGWSVASVAFGRVEAADGDPEAEREKLAHRATGSFVLNFE 498 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10073.81.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig10073.81.1 >prot_E-fasciculatus_F_contig10073.81.1 ID=prot_E-fasciculatus_F_contig10073.81.1|Name=mRNA_E-fasciculatus_F_contig10073.81.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=155bp MVVGPESGSHGLSGGGGDDDDGGLLLHACAGPGTFLAVRQALEEGVAEPVback to top mRNA from alignment at E-fasciculatus_F_contig10073:28..1472+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig10073.81.1 ID=mRNA_E-fasciculatus_F_contig10073.81.1|Name=mRNA_E-fasciculatus_F_contig10073.81.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1445bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10073:28..1472+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10073:28..1472+ >mRNA_E-fasciculatus_F_contig10073.81.1 ID=mRNA_E-fasciculatus_F_contig10073.81.1|Name=mRNA_E-fasciculatus_F_contig10073.81.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=930bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10073:28..1472+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |