mRNA_E-fasciculatus_F_contig10072.79.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig10072.79.1 vs. uniprot
Match: D8LDU2_ECTSI (DNA topoisomerase (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDU2_ECTSI) HSP 1 Score: 100 bits (248), Expect = 3.300e-19 Identity = 56/117 (47.86%), Postives = 70/117 (59.83%), Query Frame = 1 Query: 760 QGLGFGWRGPAVHLEPQ----RKEIHHLVQEGLGQVGRDNPALHVPPMRTERGRPSAGTSCSCTLIPVIWNFVAPGLSTGRAKSVALAMVVEHERARLKFTSAEYWDMVANVTSAGK 1098 +G W V LEP+ R H + QE L + + + ++ + R TL PVIWNFVAPGLS GR +SVALAMVVE ERARLKF SA+YWD+VANVT+AG+ Sbjct: 200 EGEAISWHLLQV-LEPKVPVKRAVFHEITQEALVKAFEEPGQIDENLVQAQEARRILDRLAGFTLTPVIWNFVAPGLSAGRVQSVALAMVVERERARLKFKSADYWDVVANVTAAGE 315
BLAST of mRNA_E-fasciculatus_F_contig10072.79.1 vs. uniprot
Match: D7G723_ECTSI (DNA topoisomerase I n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G723_ECTSI) HSP 1 Score: 78.6 bits (192), Expect = 2.980e-14 Identity = 38/53 (71.70%), Postives = 43/53 (81.13%), Query Frame = 1 Query: 937 TLIPVIWNFVAPGLSTGRAKSVALAMVVEHERARLKFTSAEYWDMVANVTSAG 1095 TL PVIWNFVAPGLS GR +SVA AMV+E E ARLK SA+ WD+VAN T+AG Sbjct: 67 TLTPVIWNFVAPGLSAGRVQSVAPAMVIERECARLKSNSADCWDVVANATAAG 119
BLAST of mRNA_E-fasciculatus_F_contig10072.79.1 vs. uniprot
Match: A0A6H5KEK3_9PHAE (Toprim domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEK3_9PHAE) HSP 1 Score: 74.7 bits (182), Expect = 1.030e-11 Identity = 44/99 (44.44%), Postives = 56/99 (56.57%), Query Frame = 3 Query: 663 ELYKGYAVDDCNGHVTDLVGKRTDVLAEVRRRPRAGIWLAWTRCASRTPEEGDP----SPGSR----RPRPSGTR*SCITCTTDEDREGKAISWHLLQL 935 ELYKGY VD CNGHVTDLVGKR DV AE++ + + W + P +P + R + + + I TDEDREG+AISWHLLQ+ Sbjct: 124 ELYKGYTVDACNGHVTDLVGKRRDVPAELKEQTKG-----WDVVGVDVENDFKPLYIQNPKKKAIITRLKKASAKCDEIILATDEDREGEAISWHLLQV 217
BLAST of mRNA_E-fasciculatus_F_contig10072.79.1 vs. uniprot
Match: A0A835Z3T3_9STRA (DNA topoisomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3T3_9STRA) HSP 1 Score: 73.6 bits (179), Expect = 2.060e-10 Identity = 32/55 (58.18%), Postives = 44/55 (80.00%), Query Frame = 1 Query: 937 TLIPVIWNFVAPGLSTGRAKSVALAMVVEHERARLKFTSAEYWDMVANVTSAGKS 1101 T+ P++W +AP LS GR +SVALAM+++ E ARLKF SAEYWD+ ANVT+ G++ Sbjct: 521 TMSPLLWRKIAPKLSAGRVQSVALAMIIKREMARLKFKSAEYWDLNANVTATGQT 575
BLAST of mRNA_E-fasciculatus_F_contig10072.79.1 vs. uniprot
Match: A0A7J7IIF0_9RHOD (Toprim domain-containing protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IIF0_9RHOD) HSP 1 Score: 67.8 bits (164), Expect = 7.010e-9 Identity = 36/112 (32.14%), Postives = 58/112 (51.79%), Query Frame = 1 Query: 760 QGLGFGWRGPAVHLEPQ----RKEIHHLVQEGLGQVGRDNPALHVPPMRTERGRPSAGTSCSCTLIPVIWNFVAPGLSTGRAKSVALAMVVEHERARLKFTSAEYWDMVANV 1083 +G W + L PQ R H + ++ + + R+ + + + + R TL P++W +APGLS GR +SVAL+M+VE E RL+F SA YW ++A + Sbjct: 237 EGEAISWHLVEL-LRPQVPVRRAVFHEITEDAIQEAFRNFREIDMNLVHAQETRRILDRLAGYTLSPLLWKKIAPGLSAGRVQSVALSMIVERELERLRFRSARYWSILAKL 347
BLAST of mRNA_E-fasciculatus_F_contig10072.79.1 vs. uniprot
Match: A0A5Q4F9C0_9BACT (DNA topoisomerase 1 n=1 Tax=Balneolaceae bacterium TaxID=2053516 RepID=A0A5Q4F9C0_9BACT) HSP 1 Score: 68.6 bits (166), Expect = 7.400e-9 Identity = 34/118 (28.81%), Postives = 61/118 (51.69%), Query Frame = 1 Query: 760 QGLGFGWRGPAVHLEPQ----RKEIHHLVQEGLGQVGRDNPALHVPPMRTERGRPSAGTSCSCTLIPVIWNFVAPGLSTGRAKSVALAMVVEHERARLKFTSAEYWDMVANVTSAGKS 1101 +G G W L+P+ R H + ++ + + RD +++ + + R T+ P++W + PGLS GR +SVA+ ++V ER R++F S YWD+ A ++ +G S Sbjct: 99 EGEGISWH-IVDELKPKIPVKRMVFHEITEDAIQRALRDFREINMDLVDAQEARRIVDRLAGYTISPLLWKKIGPGLSAGRVQSVAVQLLVNRERERMRFRSGSYWDLKAVLSKSGAS 215
BLAST of mRNA_E-fasciculatus_F_contig10072.79.1 vs. uniprot
Match: A0A7V5M4C3_9BACT (DNA topoisomerase 1 n=2 Tax=cellular organisms TaxID=131567 RepID=A0A7V5M4C3_9BACT) HSP 1 Score: 68.2 bits (165), Expect = 1.080e-8 Identity = 36/112 (32.14%), Postives = 59/112 (52.68%), Query Frame = 1 Query: 760 QGLGFGWRGPAVHLEPQ----RKEIHHLVQEGLGQVGRDNPALHVPPMRTERGRPSAGTSCSCTLIPVIWNFVAPGLSTGRAKSVALAMVVEHERARLKFTSAEYWDMVANV 1083 +G W + L+PQ R H + ++ + + + + + + + R TL P++W +APGLS GR +SVALAM+VE E RL+F SA+YW ++A + Sbjct: 306 EGEAISWHLVEL-LQPQVPVRRAVFHEITEDAIQEAFQSFRDIDMNLVHAQETRRILDRLAGYTLSPLLWKKIAPGLSAGRVQSVALAMIVERELERLRFRSAQYWSILAQL 416
BLAST of mRNA_E-fasciculatus_F_contig10072.79.1 vs. uniprot
Match: A0A0P7X7W9_9BACT (DNA topoisomerase 1 n=1 Tax=Bacteroidetes bacterium HLUCCA01 TaxID=1666909 RepID=A0A0P7X7W9_9BACT) HSP 1 Score: 67.8 bits (164), Expect = 1.310e-8 Identity = 34/117 (29.06%), Postives = 62/117 (52.99%), Query Frame = 1 Query: 760 QGLGFGWRGPAVHLEP----QRKEIHHLVQEGLGQVGRDNPALHVPPMRTERGRPSAGTSCSCTLIPVIWNFVAPGLSTGRAKSVALAMVVEHERARLKFTSAEYWDMVANVTSAGK 1098 +G G W V L+P +R H + ++ + + + + + + + R T+ P++W +APGLS GR +SVA+ ++V+ ER R++F S YWD+ A +T +G+ Sbjct: 99 EGEGIAWHILEV-LKPNVPVKRMVFHEITKDAINRALENFRTIDMNLVDAQETRRVVDRLAGYTISPLLWKKIAPGLSAGRVQSVAVELLVQRERERMRFRSGSYWDLRAKLTPSGQ 214
BLAST of mRNA_E-fasciculatus_F_contig10072.79.1 vs. uniprot
Match: A0A2W4J3J0_9PSEU (DNA topoisomerase (Fragment) n=1 Tax=Thermocrispum agreste TaxID=37925 RepID=A0A2W4J3J0_9PSEU) HSP 1 Score: 67.4 bits (163), Expect = 1.400e-8 Identity = 62/216 (28.70%), Postives = 86/216 (39.81%), Query Frame = 1 Query: 559 RVLVIVESPAKARKITELLK---MAASAXXXXXDEAEGSCT-----RVTPWT----------------------TATDT*RTLSARGRTCWPR*GEDQGLGFGWR-----GPAVHLEPQRKEIHHLVQEGLGQVGRDNPA-LHVPPMRTERGRPSAGTSCSCTLIPVIWNFVAPGLSTGRAKSVALAMVVEHERARLKFTSAEYWDMVANVTSAGK 1098 R LVIVESPAKARKI L + S+ D G+ + PW T D L G+ +G W P V P R+ + H + E + NP L + + R + PV+W + P LS GR +SVA +VVE ER R++FTSA YWD+ A +++ G+ Sbjct: 14 RRLVIVESPAKARKIASYLGRNYVVESSKGHIRDLPRGAADVPAEYKGQPWARLGVDVDNGFEPLYIVTPDKKATVKDLKGKLKDADELYLATDGDREGEAIAWHLIEALKPKV---PVRRMVFHEITEHAIRDAAQNPRDLDTDLVDAQETRRILDRLYGYEVSPVLWKKIMPKLSAGRVQSVATRIVVERERERMRFTSASYWDIAATMSAEGQ 226
BLAST of mRNA_E-fasciculatus_F_contig10072.79.1 vs. uniprot
Match: UPI001ACDF18D (Partial DNA topoisomerase 1 n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=UPI001ACDF18D) HSP 1 Score: 66.6 bits (161), Expect = 1.770e-8 Identity = 42/114 (36.84%), Postives = 59/114 (51.75%), Query Frame = 1 Query: 760 QGLGFGWRGPAVHLEPQ---RKEIHH-----LVQEGLGQVGRDNPALHVPPMRTERGRPSAGTSCSCTLIPVIWNFVAPGLSTGRAKSVALAMVVEHERARLKFTSAEYWDMVA 1077 +G GW V L+PQ R+ + H +QE LGQ + L +R + R T+ P++W VA GLS GR +SVA+ M+V+ ER R+ F SA YWD+ A Sbjct: 99 EGESIGWHLTEV-LKPQVPIRRMVFHEITREAIQEALGQTREIDQQL----VRAQETRRILDRLVGYTVSPLLWKKVASGLSAGRVQSVAMQMLVKRERERIAFRSATYWDLKA 207 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10072.79.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig10072.79.1 >prot_E-fasciculatus_F_contig10072.79.1 ID=prot_E-fasciculatus_F_contig10072.79.1|Name=mRNA_E-fasciculatus_F_contig10072.79.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=189bp MVHVAVPQQQCQPTAKVQGWKWIAPGSSMLLSRVGRRSGATAVRWRCTGSback to top mRNA from alignment at E-fasciculatus_F_contig10072:78..3722- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig10072.79.1 ID=mRNA_E-fasciculatus_F_contig10072.79.1|Name=mRNA_E-fasciculatus_F_contig10072.79.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3645bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10072:78..3722- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10072:78..3722- >mRNA_E-fasciculatus_F_contig10072.79.1 ID=mRNA_E-fasciculatus_F_contig10072.79.1|Name=mRNA_E-fasciculatus_F_contig10072.79.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1134bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10072:78..3722- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |