mRNA_E-fasciculatus_F_contig10068.75.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig10068.75.1 vs. uniprot
Match: D7FVH8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVH8_ECTSI) HSP 1 Score: 391 bits (1004), Expect = 2.700e-132 Identity = 221/249 (88.76%), Postives = 227/249 (91.16%), Query Frame = 1 Query: 1 IFRNSFGPSYLFANVRTSLGKALSAFVKEGAGGTADGKVVVQGLDSKGEGLEDGETRLSTEVHEDGSTEWGGFGGKLALPDPEISTTVGETLQAPEKPRGMFEDVSNNQVAMAVYAMPPKGEHVCRMLPGVEALPRTLLPQDLVSRRPPRLNRNMSIAEMGSTKYNPHQQQGGRHQGGFGAGQRMIRHQLGGXXXXX-YHGQSQQGYGHQQGXXXXXXXXXGGYEDMHHMHQPTGNRRWGSQEPTPKRN 744
+ RNSFGPSYLF NVRTSLGKA+SAFVKEGAGG A G V V+GLDSKGEGLEDGETRL TEV EDGSTEWGGFGGKLALP PEIST VGETLQAPEKPRGMFEDV+NNQV MAVYAMPPKGEHVCRMLPGV+ALP+TLLPQDLVSRRPPRLNRNMSIAEMGSTKYNPHQQQGGRHQGGFGAGQRMIRHQLG XXXXX YHGQSQ GYG XXXXXXXXX DMHHMHQPTGNRRWGSQEPTPKRN
Sbjct: 3 VLRNSFGPSYLFTNVRTSLGKAVSAFVKEGAGGKAGG-VEVKGLDSKGEGLEDGETRLCTEVQEDGSTEWGGFGGKLALPAPEISTAVGETLQAPEKPRGMFEDVANNQVVMAVYAMPPKGEHVCRMLPGVDALPKTLLPQDLVSRRPPRLNRNMSIAEMGSTKYNPHQQQGGRHQGGFGAGQRMIRHQLGXXXXXXXYHGQSQ-GYGXXXXXXXXXXXXXXXXXDMHHMHQPTGNRRWGSQEPTPKRN 249
BLAST of mRNA_E-fasciculatus_F_contig10068.75.1 vs. uniprot
Match: A0A6H5JF35_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF35_9PHAE) HSP 1 Score: 411 bits (1056), Expect = 3.850e-131 Identity = 221/246 (89.84%), Postives = 230/246 (93.50%), Query Frame = 1 Query: 7 RNSFGPSYLFANVRTSLGKALSAFVKEGAGGTADGKVVVQGLDSKGEGLEDGETRLSTEVHEDGSTEWGGFGGKLALPDPEISTTVGETLQAPEKPRGMFEDVSNNQVAMAVYAMPPKGEHVCRMLPGVEALPRTLLPQDLVSRRPPRLNRNMSIAEMGSTKYNPHQQQGGRHQGGFGAGQRMIRHQLGGXXXXXYHGQSQQGYGHQQGXXXXXXXXXGGYEDMHHMHQPTGNRRWGSQEPTPKRN 744
RNSFGPSYLFANVRT LGKA+SAFVKEGAGGTA G V V+GLDSK EGLE GE RL TEV EDGSTEWGGFGGKLA+P+PEIST VG+TLQAPEKPRGMFEDV+NNQVAMAVYAMPPKGEHVCRMLPGVEALP+TLLPQDLVSRRPPRLNRNMSIAEMGSTKYNPHQQQGGRHQGGFGAGQRMIRHQLGGXXXXXYHGQSQ GYG+QQG XXXX GGYEDMHHMHQPTG+RRWGSQEPTPKRN
Sbjct: 880 RNSFGPSYLFANVRTPLGKAVSAFVKEGAGGTAGG-VEVKGLDSKAEGLEAGEARLCTEVQEDGSTEWGGFGGKLAIPNPEISTAVGDTLQAPEKPRGMFEDVANNQVAMAVYAMPPKGEHVCRMLPGVEALPKTLLPQDLVSRRPPRLNRNMSIAEMGSTKYNPHQQQGGRHQGGFGAGQRMIRHQLGGXXXXXYHGQSQ-GYGYQQGGRSXXXXYHGGYEDMHHMHQPTGSRRWGSQEPTPKRN 1123
BLAST of mRNA_E-fasciculatus_F_contig10068.75.1 vs. uniprot
Match: A0A835YKU1_9STRA (XRN 5'-3' exonuclease N-terminus-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKU1_9STRA) HSP 1 Score: 97.8 bits (242), Expect = 1.830e-19 Identity = 63/161 (39.13%), Postives = 84/161 (52.17%), Query Frame = 1 Query: 7 RNSFGPSYLFANVRTSLGKALSAFVKEGAGGTADGKVVVQGLDSKGEGLEDGETRLSTEVHEDGSTEWGGFGGKLA-LPDPEISTTVGETLQAPEKPRGMFEDVSNNQVAMAVYAMPPKGEHVCRMLPGVEALPRTLLPQDLVSRRPPRLNRNMSIAEMGS 486
RNSFGPSY+F + + L + + + G G SKG+ L ++E+ G+ G + + +G+ L APE+P G E V NNQV A Y MPP+ HVC MLPGV+ L P+DL RRPPRLNR MSIAE+G+
Sbjct: 1598 RNSFGPSYIFVHSTSHLSQRIMGVYQAG-----------NGKKSKGDFLR--------------ASEFEGWSGTVKPAKGADARQQLGKPLPAPERPEGALEGVKNNQVLCAEYEMPPRMPHVCAMLPGVDPPAIELGPEDLTPRRPPRLNRGMSIAELGT 1733 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10068.75.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 3 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig10068.75.1 >prot_E-fasciculatus_F_contig10068.75.1 ID=prot_E-fasciculatus_F_contig10068.75.1|Name=mRNA_E-fasciculatus_F_contig10068.75.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=250bp IFRNSFGPSYLFANVRTSLGKALSAFVKEGAGGTADGKVVVQGLDSKGEGback to top mRNA from alignment at E-fasciculatus_F_contig10068:44..3017- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig10068.75.1 ID=mRNA_E-fasciculatus_F_contig10068.75.1|Name=mRNA_E-fasciculatus_F_contig10068.75.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2974bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10068:44..3017- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10068:44..3017- >mRNA_E-fasciculatus_F_contig10068.75.1 ID=mRNA_E-fasciculatus_F_contig10068.75.1|Name=mRNA_E-fasciculatus_F_contig10068.75.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1500bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10068:44..3017- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |