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Homology
BLAST of mRNA_E-fasciculatus_F_contig10060.73.1 vs. uniprot
Match: A0A6H5L0C1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L0C1_9PHAE) HSP 1 Score: 330 bits (845), Expect = 2.240e-112 Identity = 195/222 (87.84%), Postives = 204/222 (91.89%), Query Frame = 1
Query: 1 MAFAALRSRGLQACSGVAIRAAIASTRTQPLAPT-ALAGARRLLSSPAPTGAPSSPTAAAKGQSQLHRGKKAEGEERRLWPYIKAARQQFFNVILATLSIVMAVKMVEGKGARVALEEEMVELQRRQAVLLKSLADEEWAEDFAKRIGAAGGKEAVMVEIEKVVAASLLDKETAQLEAMRAAALKTSLEQQKHGAPYSGGVGGAFADEQPRDASASPVATKP 663
M ALRSRGLQACS VA+RAAIA +TQ LAP +AGARRLLSSPAPTGAPS PTAAAKGQSQLHRGKKAEGEERRLWPY+KAARQQFFNVILATLSIVMAVKMVEGKGARVALEEEMVELQR+Q VLL+SL+DE WAED AKRIGAAGGKEAVMVEIEKVVAASLLDKETA+LEAMRAAALKTSLEQQKHGAPY GGVG AF DEQPR+ASASPVA KP
Sbjct: 1 MVLTALRSRGLQACSHVAMRAAIAP-QTQQLAPAEGVAGARRLLSSPAPTGAPS-PTAAAKGQSQLHRGKKAEGEERRLWPYLKAARQQFFNVILATLSIVMAVKMVEGKGARVALEEEMVELQRQQGVLLRSLSDEAWAEDVAKRIGAAGGKEAVMVEIEKVVAASLLDKETAELEAMRAAALKTSLEQQKHGAPYPGGVG-AFDDEQPREASASPVARKP 219
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | mitochondrion |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-08_001020.1 |
| Exons | 5 |
| Model size | 675 |
| Cds size | 675 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig10060.73.1 >prot_E-fasciculatus_F_contig10060.73.1 ID=prot_E-fasciculatus_F_contig10060.73.1|Name=mRNA_E-fasciculatus_F_contig10060.73.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=225bp
MAFAALRSRGLQACSGVAIRAAIASTRTQPLAPTALAGARRLLSSPAPTG
APSSPTAAAKGQSQLHRGKKAEGEERRLWPYIKAARQQFFNVILATLSIV
MAVKMVEGKGARVALEEEMVELQRRQAVLLKSLADEEWAEDFAKRIGAAG
GKEAVMVEIEKVVAASLLDKETAQLEAMRAAALKTSLEQQKHGAPYSGGV
GGAFADEQPRDASASPVATKPGER* back to topmRNA from alignment at E-fasciculatus_F_contig10060:289..3839- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig10060.73.1 ID=mRNA_E-fasciculatus_F_contig10060.73.1|Name=mRNA_E-fasciculatus_F_contig10060.73.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3551bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10060:289..3839- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCGTTTGCTGCTTTGCGCAGCCGTGGGCTGCAAGCTTGCTCCGGCGT
GGCGATTCGAGCCGCAATTGCATCAACCCGGACACAACCACTCGCCCCAA
CCGCATTAGCAGGTGAGTTAGATATCGACACAATCCTCCGCGTAGCGTCT
TCCACACTGCTGTGCTCCGTACCTATATTTATGGCGTAACCACACCCGTT
ATGGCTGGTGTCGGGTTGACGTACAAGACGCTTGCCACTCCTTCGCGGTT
CTGGATGTCTCCTCTCGCCGCCGTCCACACTCCATGCCCAAGCTTTGGAT
CGTAAACGAGCGACGCTATTGTATCTGCCTGCTTTGATACGGGGTATACA
TGGGCCTCCACAGAGCGAAGTGGGTGTCGTCACGCAGTGTGTGCAATGCG
CTTGACTAACAATTCTATATCAATTCCAGGTAGATTTATGTACTGCTGCT
GTAGTAGTCCCCCCCCCTACTGCTGTGGCAGGTGTGTGTAATCTCGCCGC
ATGTGTCTACAGCAGGGACCACGACTAGAAACTTGATACGCGGCCAGGAG
TGAGAGGCCTGATGCCGATCGCAGGAGCATCAGTGGCCTAGGAGGGAGTG
CGGTTAGTCAGCAACCACGCTCGATGCGGCTGTGCCAACGTGGTATCGCC
GATGGCGTTTGGCAAGCCTGCTCGCAGCCCAGAGAAGGCGAGCTCCGGTC
TCGACCGACAAGCTCGGACGCCTTCCCTGGAACCAAAGCTGGCCACCATT
TTACCCCCCTTTTTTCATCGCTGGGGCAACACAAATCGTACTTGAGAACT
TCCACGCCTCCCTCAATGTCTGCCAAGGTGCACGCCGCTTGCTTAGCAGC
CCGGCCCCCACCGGCGCGCCATCATCTCCAACAGCGGCGGCGAAAGGGCA
GAGCCAGCTGCACAGGGGCAAGAAGGCGGAAGGGGAGGAGAGGAGGCTGT
GGCCCTACATCAAGGCCGCCAGGCAGCAGTTCTTCAACGTCATCCTGGCC
ACGCTTTCCATCGTGATGGCGGTCAAGATGGTGGAGGGGAAGGTGCGGCG
TATCGTTTTTTTTGCCACGCACGTCTTGTCGTGGTTGCCGGATGTGTATT
ACAGAGAGAACAAGACTTGCGACTTGAGACGGAGAGGTGGGGGTGCCGCT
GCCGTAGTTTTGTTTGGGTCCGAGAGGTGACAGTTTCTTGCAGCCGTAAA
CATGACGCGTCCTATGCGCAAAGGCGGGCCTAAGTCGGTACTTGTCCCCG
TGGTTGATATGGTGGTGTGCAACCTACGCCCAGGGTGGCTGCGGTAGGTA
TCTAGCTTTCGGGGAGTGGAAGAATGATCATGTACCTCGCCGAGTGCGGC
TGTTATAGAGGGTGTTCGCCTGCCCTTCGTTTACCGGGACAGCTTCGCCA
TTACGACGGAAGTGTAACGGTCGTGGTTTTCTGTTTATTGTTACTGTAAT
TTTATTGTGATTTCGAGCACGTTCGAAACCACATGGCAACGTGAAAGCCT
TCTGCCGCGACCACGCACCCTTTGAGTTGCCTTGAGAGGCGTAGCTTACC
CCCAATAAACGATGCGTAGGTGCAAGAGACTAAACATGCAGAGCGACAGG
TGCTTGTCCGTTCTTCTGTTCGTTCGGATTTCTACTCCGTACCTTTGAAC
ACCCGTACTGGCCCAACTGACGCATTTTGTGTTCACAGGCCAACTACCCC
AATAGGGTACGTCATGCTACGACATCTGTGTTGCGATTGACAACAATCGC
GATAAAAAAGTAAAAAAACGGAAGGAGGAGATGAGGGAGAAGAACGACGC
AGGCCAGGCGCGTTACAACTTTTTCTGAAAAGTGTTCTGAAGAATGTTGT
CACCTCCCCGCTGTGTTTGCGTATACTGCTGTACAGGGGGCGAGAGTAGC
GCTGGAGGAGGAGATGGTCGAGCTGCAGCGGCGACAGGCCGTGCTCTTAA
AGTCTTTGGCGGACGAGGAGTGGGCAGAGGTGAAGACAAGTACATATGTA
CATGGTAGCCATGGAGAACAGCACGGCAGAGGGCCAAGTACTGTAGCAGC
GTTCGAAAGTAGTCGCCTCGAAGGGCGCTGAGTGTTGTGGAAAGCTTCGA
GAGGCTGTTTCGCGGAACGATATACTACGCGTGTTCAACGGGTGGCGCTT
GAAGAGAAAATCGTGATAGAAAATCACAGAAAATTCCAGGACGTGGCGTA
GAAGGAGGCAAGAGACACAAACACACAAACATGAAAGCCCCTTTGTGCGG
TGACGGGCGCACCCACAACACAACACTCCGCTTCTGTCGAGAAGCTGCAC
TGAGTATGAACAGCCTCCGTTCATTTTGTTTTCCTGTATTGGTGGATACC
GTGCACTGATTTCGCCGTTTTTTTGTATCTACGTTGTGGTTCTTTTTAGA
AAATATTCTTCCACCTACTGTATGCATCCTATCAAAGAAAGAAGGAAAGA
CTTGCCATTCGAGACTAATACCACAGTCGAAAGAGATGTGCTTGTTGTTG
TGATGGCTGTCGGAGCATTTATTGCCCCCTGACTTTCCCGATCACTTTCT
TTCGTAAACGTTGGCATTCTTTCGTTTTTTGCGTGTGTATGATGGTTGTG
TAGGCTAAGATTCTTGGTTGCTCGCTCACCACTCCTCTACCGCCGTCGGA
AAAAGTCTCTGGTTTCCTGTGTTGTTGCTGCTGTTGTTTTGTTCCGGTTG
GCAGGATTTCGCGAAGCGGATCGGCGCCGCTGGCGGCAAGGAGGCGGTGA
TGGTCGAAATCGAAAAAGGTTCGTCAAACCCTCTCCCTAAAGGTCACATC
GGTGCTTGTACCGTTTCCGATTCGTACACAGTTCCCCCCCCCCCTCCGTT
CGGGAGTTCCACTTACTATCGGCCGCCCTACAATGGCAAGAGAGCGAAGA
GCTGGAACACGCCAGCCCTATTTTCTGCCGTTGCTGTCTGTTTAGAACCC
TTATCATTTGGGCGAGAGGAGTATCCTGCCTCCACGGTCTACGGAAGCGC
CATATATATGGAGCTTACCAAACGCTGCACCAGATTTACGGTAACGATCT
CCGGTCGCTCCGAGGAAAAGGTTCCGTCATTGCTGTTTAATCCGAGATAG
CAGAAGAACAACTATAGCGCACCCACCGAACGCTTTTTTCGCTGCTATTA
CACACAGACTGCCTGTATTGCGAAAAAAACGTGAGTTGGTCGTTTCCTCT
TTCGCGGGTTGGTTGTCAGAAAATACCGCACGCATCCAATCACTGAAAGA
CTGCCCGTTCTAGACAATACCACTCTGCGTACTCGAAGGCATGTTGTTGA
AGGGATGCTTTGCTTTTTCGCGCGTATCGTTTCACCCCCCCACACGCGAA
CCCCCAACAGTTGTGGCAGCGAGCCTCCTCGACAAGGAGACTGCCCAGCT
GGAGGCTATGCGAGCCGCCGCGCTAAAGACAAGCCTGGAGCAACAGAAAC
ACGGAGCCCCCTACTCGGGCGGGGTGGGGGGGGCATTCGCCGACGAACAA
CCCCGCGATGCTTCCGCCTCGCCAGTGGCAACAAAACCTGGTGAGCGATG
A back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig10060:289..3839- >mRNA_E-fasciculatus_F_contig10060.73.1 ID=mRNA_E-fasciculatus_F_contig10060.73.1|Name=mRNA_E-fasciculatus_F_contig10060.73.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1350bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10060:289..3839- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCGTTTGCTGCTTTGCGCAGCCGTGGGCTGCAAGCTTGCTCCGGCGT
GGCGATTCGAGCCGCAATTGCATCAACCCGGACACAACCACTCGCCCCAA
CCGCATTAGCAGATGGCGTTTGCTGCTTTGCGCAGCCGTGGGCTGCAAGC
TTGCTCCGGCGTGGCGATTCGAGCCGCAATTGCATCAACCCGGACACAAC
CACTCGCCCCAACCGCATTAGCAGGTGCACGCCGCTTGCTTAGCAGCCCG
GCCCCCACCGGCGCGCCATCATCTCCAACAGCGGCGGCGAAAGGGCAGAG
CCAGCTGCACAGGGGCAAGAAGGCGGAAGGGGAGGAGAGGAGGCTGTGGC
CCTACATCAAGGCCGCCAGGCAGCAGTTCTTCAACGTCATCCTGGCCACG
CTTTCCATCGTGATGGCGGTCAAGATGGTGGAGGGGAAGGTGCACGCCGC
TTGCTTAGCAGCCCGGCCCCCACCGGCGCGCCATCATCTCCAACAGCGGC
GGCGAAAGGGCAGAGCCAGCTGCACAGGGGCAAGAAGGCGGAAGGGGAGG
AGAGGAGGCTGTGGCCCTACATCAAGGCCGCCAGGCAGCAGTTCTTCAAC
GTCATCCTGGCCACGCTTTCCATCGTGATGGCGGTCAAGATGGTGGAGGG
GAAGGGGGCGAGAGTAGCGCTGGAGGAGGAGATGGTCGAGCTGCAGCGGC
GACAGGCCGTGCTCTTAAAGTCTTTGGCGGACGAGGAGTGGGCAGAGGGG
GCGAGAGTAGCGCTGGAGGAGGAGATGGTCGAGCTGCAGCGGCGACAGGC
CGTGCTCTTAAAGTCTTTGGCGGACGAGGAGTGGGCAGAGGATTTCGCGA
AGCGGATCGGCGCCGCTGGCGGCAAGGAGGCGGTGATGGTCGAAATCGAA
AAAGGATTTCGCGAAGCGGATCGGCGCCGCTGGCGGCAAGGAGGCGGTGA
TGGTCGAAATCGAAAAAGTTGTGGCAGCGAGCCTCCTCGACAAGGAGACT
GCCCAGCTGGAGGCTATGCGAGCCGCCGCGCTAAAGACAAGCCTGGAGCA
ACAGAAACACGGAGCCCCCTACTCGGGCGGGGTGGGGGGGGCATTCGCCG
ACGAACAACCCCGCGATGCTTCCGCCTCGCCAGTGGCAACAAAACCTGGT
GAGCGATGATTGTGGCAGCGAGCCTCCTCGACAAGGAGACTGCCCAGCTG
GAGGCTATGCGAGCCGCCGCGCTAAAGACAAGCCTGGAGCAACAGAAACA
CGGAGCCCCCTACTCGGGCGGGGTGGGGGGGGCATTCGCCGACGAACAAC
CCCGCGATGCTTCCGCCTCGCCAGTGGCAACAAAACCTGGTGAGCGATGA back to top
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