mRNA_E-fasciculatus_F_contig10053.66.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig10053.66.1 vs. uniprot
Match: D8LHD3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHD3_ECTSI) HSP 1 Score: 143 bits (360), Expect = 5.180e-35 Identity = 90/186 (48.39%), Postives = 96/186 (51.61%), Query Frame = 1 Query: 262 PPPFDISSTGSWAGWGVHLKTFLQPRRVAPALVMRAAVAATRAAAVVAPATGLALPP-RRR*LFWMTRTCSTAARSFRLAGCCVRPLRNTLSWAAAXXXXXXXXXXXGPRESAGAGQPRARW*ARRHLRSRARTGMGGGLPLGSVLLDTPRPFSAQGSGXXXXXXXXXMVFMGNRSGDDNLTTEDP 816
P FD STGSW G G HLKTFL PRR PA+V+RAAVAATR AAVV T LA P RRR L WMT+TCS A RSF L+GCCVRPL W GGGL LGSVLLDTP P Q SG M MG SGD++LTTEDP
Sbjct: 52 PRHFDGGSTGSWTGRGAHLKTFLPPRRTEPAVVIRAAVAATRTAAVVVALTALAFPRGRRRRLSWMTQTCSVAVRSFPLSGCCVRPLSGEQEW-------------------------------------------GGGLQLGSVLLDTPGPSLQQRSGGGDGDVDGGMGLMGKTSGDESLTTEDP 194
BLAST of mRNA_E-fasciculatus_F_contig10053.66.1 vs. uniprot
Match: D8LHD0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHD0_ECTSI) HSP 1 Score: 127 bits (318), Expect = 1.200e-29 Identity = 99/125 (79.20%), Postives = 104/125 (83.20%), Query Frame = 3 Query: 186 RLGCGLSVGTRVTSTPPSFPALHDTSTSLRHQLHRKLGGMGG-APEDLSSTAAGGTGV--GHEGXXXXXXXXXXXXXXXXXXXXXXXXXTLLDDPDLQHCSPVVSTSGVLRPTPQEHLVVGGSCG 551
R GCG S+GTRV S PPS PALHD ST+ RHQLHRK GGMGG APEDLSSTAAGGTGV G +GXXXXXXXXXXXXXXXXXXXXXXXXX L DDP LQ+ SP VST+GVLRPTPQEH VV G G
Sbjct: 15 RSGCGPSIGTRVASAPPSSPALHDASTTQRHQLHRKRGGMGGGAPEDLSSTAAGGTGVSLGRQGXXXXXXXXXXXXXXXXXXXXXXXXXXLPDDPGLQYRSPAVSTNGVLRPTPQEHFVVDGRGG 139
BLAST of mRNA_E-fasciculatus_F_contig10053.66.1 vs. uniprot
Match: D8LHJ2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHJ2_ECTSI) HSP 1 Score: 92.4 bits (228), Expect = 4.790e-16 Identity = 62/94 (65.96%), Postives = 66/94 (70.21%), Query Frame = 3 Query: 246 ALHDTSTSLRHQLHRKLGGMGGAPEDLSSTAA-GGTGVGHEGXXXXXXXXXXXXXXXXXXXXXXXXXTLLDDPDLQHCS-PVVSTSGVLRPTPQ 521
ALHD S SLRHQLHRKLGGMGG PED SS AA GG+GVG+EGXXXXXX +LLDDPDLQ+ S PVVST GVLRPTPQ
Sbjct: 176 ALHDASASLRHQLHRKLGGMGGVPEDFSSAAAAGGSGVGYEGXXXXXXAVGDGPGGTAATTA-----SLLDDPDLQYSSSPVVSTGGVLRPTPQ 264
BLAST of mRNA_E-fasciculatus_F_contig10053.66.1 vs. uniprot
Match: A0A6H5KJQ4_9PHAE (EXS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJQ4_9PHAE) HSP 1 Score: 82.0 bits (201), Expect = 9.470e-13 Identity = 76/101 (75.25%), Postives = 78/101 (77.23%), Query Frame = 3 Query: 246 ALHDTSTSLRHQLHRKLGGMGGAPEDLSSTAAGGTGVGHEGXXXXXXXXXXXXXXXXXXXXXXXXXTLLDDPDLQHCS-PVVSTSGVLRPTPQEHLVVGGS 545
ALHD S SLRHQLHRKLGGMGG ED SS XXXXXXXXXXXXXXXXXXXXXXXXX LLDDPDLQ+ S PVVST GVLRPTPQEH +V GS
Sbjct: 18 ALHDASASLRHQLHRKLGGMGGVREDFSSAXX----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLDDPDLQYSSSPVVSTGGVLRPTPQEHFLVAGS 114 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10053.66.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 4 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig10053.66.1 >prot_E-fasciculatus_F_contig10053.66.1 ID=prot_E-fasciculatus_F_contig10053.66.1|Name=mRNA_E-fasciculatus_F_contig10053.66.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=262bp MIYQTVDCHVHASCFRLGCGLSVGTRVTSTPPSFPALHDTSTSLRHQLHRback to top mRNA from alignment at E-fasciculatus_F_contig10053:181..3059- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig10053.66.1 ID=mRNA_E-fasciculatus_F_contig10053.66.1|Name=mRNA_E-fasciculatus_F_contig10053.66.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2879bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10053:181..3059- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10053:181..3059- >mRNA_E-fasciculatus_F_contig10053.66.1 ID=mRNA_E-fasciculatus_F_contig10053.66.1|Name=mRNA_E-fasciculatus_F_contig10053.66.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1572bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10053:181..3059- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |