mRNA_E-fasciculatus_F_contig1005.63.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1005.63.1 vs. uniprot
Match: D8LFL9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFL9_ECTSI) HSP 1 Score: 209 bits (533), Expect = 2.390e-61 Identity = 122/237 (51.48%), Postives = 141/237 (59.49%), Query Frame = 1 Query: 4 FTYIVLTMRDQHVEWLKNHKR-SLMLELASIYHYYLHPGHCPDGIRRENDDPILFGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNQSTLEITCTMHNRSGKEPKMVRLSDVKNDLESRLNLTHKASFPFRMEV----PDPRD--------------------KAKRLPVTGVIRYYPYVKERETRPRARPHEEDDESITVEAFWEGRLVPESHAASLPFFPPHKP 639
FTYIVLT+RDQH+EW +H++ SL ELASIYHYYLHPGHCP GI+R++D P F D XXXX Q LEIT T NRSG+ + RL D+ +D+ESRLN K SF F MEV +PRD +A+R+PVTGVI YYPY E ETRP+ RP EEDDESIT+EAFWEGRLVPESHAA LPFFP HKP
Sbjct: 301 FTYIVLTLRDQHMEWFTDHEKGSLKRELASIYHYYLHPGHCPGGIQRDDDMPSSFEDNNHAGADGRGEEGAASSTAQGDPGGQGSGEIGSSXXXXGGQRALEITYTRRNRSGQAADVFRLGDITDDVESRLNAARKDSFMFHMEVLHPMVNPRDGTKRLPVTVRSLLPDASVAAEARRVPVTGVIHYYPYDGENETRPQVRPDEEDDESITIEAFWEGRLVPESHAAWLPFFPSHKP 537
BLAST of mRNA_E-fasciculatus_F_contig1005.63.1 vs. uniprot
Match: A0A6H5JXR4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXR4_9PHAE) HSP 1 Score: 202 bits (515), Expect = 1.830e-56 Identity = 130/254 (51.18%), Postives = 144/254 (56.69%), Query Frame = 1 Query: 4 FTYIVLTMRDQHVEWLKNH-KRSLMLELASIYHYYLHPGHCPDGIRRENDDPILFGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNQSTLEITCTMHNRSGKEPKMVRLSDV-----------------KNDLESRLNLTHKASFPFRMEV----PDPRDKAKRLPVT--------------------GVIRYYPYVKERETRPRARPHEEDDESITVEAFWEGRLVPESHAASLPFFPPHKP 639
FTYIVLT+RDQHVEW NH K SL ELASIYHYYLHP HCP GI+R++D P F D XXXXXXXX Q LEIT T NRSG+ + RL D+ K+D+ESRLN K SF F MEV +PRD+ KRLPVT GVI YYPY E+ETRP+ RP EEDDESIT+EAFWEGRLVPESHAA LPFFP HKP
Sbjct: 251 FTYIVLTLRDQHVEWFSNHDKGSLKRELASIYHYYLHPEHCPGGIQRDDDMPSSFEDNNRAGADGRGEEGAASSTTHGDPGGQGSGAIXXXXXXXXXQRALEITYTRRNRSGQPADVCRLGDITDDVESRRRLYSRSDAIKDDVESRLNAARKDSFMFHMEVLHPMVNPRDETKRLPVTVRSLLPDASVAAEARRVPVTGVIHYYPYDGEKETRPQVRPDEEDDESITIEAFWEGRLVPESHAAWLPFFPSHKP 504
BLAST of mRNA_E-fasciculatus_F_contig1005.63.1 vs. uniprot
Match: D7FYN6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYN6_ECTSI) HSP 1 Score: 63.5 bits (153), Expect = 2.800e-8 Identity = 28/48 (58.33%), Postives = 35/48 (72.92%), Query Frame = 1 Query: 4 FTYIVLTMRDQHVEWLKNHKRSLMLELASIYHYYLHPGHCPDGIRREN 147
FTYIVL++R++HV+ + + L LELASIYHYYLHP CP GI N
Sbjct: 300 FTYIVLSLREEHVDSYRQRETPLHLELASIYHYYLHPEDCPPGIASNN 347
BLAST of mRNA_E-fasciculatus_F_contig1005.63.1 vs. uniprot
Match: UPI00201E81A8 (structural maintenance of chromosomes flexible hinge domain-containing protein 1-like n=2 Tax=Haliotis TaxID=6452 RepID=UPI00201E81A8) HSP 1 Score: 58.9 bits (141), Expect = 1.490e-6 Identity = 39/132 (29.55%), Postives = 64/132 (48.48%), Query Frame = 1 Query: 301 LEITCTMHNRSGKEPKMVRLSDVKNDLESRLNLTHKASFPFRMEVPDPRDKAKRLPVTGVIRYYPYVKERET------RPRARPHEEDDESITV------------EAFWEGRLVPESHAASLPFF-PPHKP 639
++I +++ R G +PK+V L D+++D++S T ++F F+ V V GV+RY+P++ +RET PR P EDD + E +W GRL+P + + PP KP
Sbjct: 373 IDIEVSLYTRGGPQPKVVNLRDIEDDMQSMFLHTASSNFEFKALVDGTNI------VEGVLRYHPFLYDRETFPSEAYDPRMDPEPEDDHDYAINDRPARGRRPVFECYWNGRLIPYTLIEDFEWCCPPKKP 498
BLAST of mRNA_E-fasciculatus_F_contig1005.63.1 vs. uniprot
Match: A0A8C4S0L8_ERPCA (Structural maintenance of chromosomes flexible hinge domain containing 1 n=1 Tax=Erpetoichthys calabaricus TaxID=27687 RepID=A0A8C4S0L8_ERPCA) HSP 1 Score: 57.4 bits (137), Expect = 4.830e-6 Identity = 42/116 (36.21%), Postives = 61/116 (52.59%), Query Frame = 1 Query: 295 STLEITCTMHNRSGKEPKMVRLSDVKNDLESRLNLTHKASFPFRMEVPDPRDKAKRLPVTGVIRYYPYVKERETRPR-----ARPHEEDDESITVE-----------AFWEGRLVP 594
S ++I +M + GK PKMV L ++K+D++S + SF FR EV D V GVIRY+P++ +RET P + E+D++ I VE FW GRL+P
Sbjct: 41 SNIDIQISMFEK-GKVPKMVNLREIKDDMQSLYINSASDSFEFRTEVDG--DGV----VEGVIRYHPFLFDRETYPDDPNGILKTDEDDEDCILVEQKARGKKPVFECFWNGRLIP 149
BLAST of mRNA_E-fasciculatus_F_contig1005.63.1 vs. uniprot
Match: UPI001963F4B7 (structural maintenance of chromosomes flexible hinge domain-containing protein 1 n=2 Tax=Polypteridae TaxID=8289 RepID=UPI001963F4B7) HSP 1 Score: 56.2 bits (134), Expect = 1.210e-5 Identity = 41/116 (35.34%), Postives = 61/116 (52.59%), Query Frame = 1 Query: 295 STLEITCTMHNRSGKEPKMVRLSDVKNDLESRLNLTHKASFPFRMEVPDPRDKAKRLPVTGVIRYYPYVKERETRPR-----ARPHEEDDESITVE-----------AFWEGRLVP 594
S ++I +M + GK P+MV L ++K+D++S + SF FR EV D V GVIRY+P++ +RET P + E+D++ I VE FW GRL+P
Sbjct: 371 SNIDIQISMFEK-GKVPRMVNLREIKDDMQSLYINSASDSFEFRTEVDG--DGV----VEGVIRYHPFLFDRETYPDDPNGILKTDEDDEDCILVEQKARGKKPVFECFWNGRLIP 479
BLAST of mRNA_E-fasciculatus_F_contig1005.63.1 vs. uniprot
Match: A0A4W3K7P6_CALMI (SMC hinge domain-containing protein n=1 Tax=Callorhinchus milii TaxID=7868 RepID=A0A4W3K7P6_CALMI) HSP 1 Score: 55.8 bits (133), Expect = 1.600e-5 Identity = 38/128 (29.69%), Postives = 67/128 (52.34%), Query Frame = 1 Query: 295 STLEITCTMHNRSGKEPKMVRLSDVKNDLESRLNLTHKASFPFRMEVPDPRDKAKRLPVTGVIRYYPYVKERETRPRARPH---EEDDESITV-----------EAFWEGRLVPESHAASLPFFPPHK 636
+ ++I +M + GK PK+V L ++K+D+++R T SF F+ V + + + V G+IRY+P++ ++ET P + +ED++ +V E FW GRL+P + F P K
Sbjct: 308 NNIDIEISMFEK-GKVPKIVNLREIKDDMQTRFINTASDSFEFKAHV-----EGEGV-VEGIIRYHPFLYDKETYPEDLSYVMDDEDEDCFSVDKAARGKRPIFECFWNGRLIPYTTVEDFEFCAPPK 428
BLAST of mRNA_E-fasciculatus_F_contig1005.63.1 vs. uniprot
Match: A0A4W3JDR8_CALMI (SMC hinge domain-containing protein n=1 Tax=Callorhinchus milii TaxID=7868 RepID=A0A4W3JDR8_CALMI) HSP 1 Score: 55.8 bits (133), Expect = 1.610e-5 Identity = 38/128 (29.69%), Postives = 67/128 (52.34%), Query Frame = 1 Query: 295 STLEITCTMHNRSGKEPKMVRLSDVKNDLESRLNLTHKASFPFRMEVPDPRDKAKRLPVTGVIRYYPYVKERETRPRARPH---EEDDESITV-----------EAFWEGRLVPESHAASLPFFPPHK 636
+ ++I +M + GK PK+V L ++K+D+++R T SF F+ V + + + V G+IRY+P++ ++ET P + +ED++ +V E FW GRL+P + F P K
Sbjct: 335 NNIDIEISMFEK-GKVPKIVNLREIKDDMQTRFINTASDSFEFKAHV-----EGEGV-VEGIIRYHPFLYDKETYPEDLSYVMDDEDEDCFSVDKAARGKRPIFECFWNGRLIPYTTVEDFEFCAPPK 455
BLAST of mRNA_E-fasciculatus_F_contig1005.63.1 vs. uniprot
Match: A0A4W3JAN6_CALMI (SMC hinge domain-containing protein n=1 Tax=Callorhinchus milii TaxID=7868 RepID=A0A4W3JAN6_CALMI) HSP 1 Score: 55.8 bits (133), Expect = 1.620e-5 Identity = 38/128 (29.69%), Postives = 67/128 (52.34%), Query Frame = 1 Query: 295 STLEITCTMHNRSGKEPKMVRLSDVKNDLESRLNLTHKASFPFRMEVPDPRDKAKRLPVTGVIRYYPYVKERETRPRARPH---EEDDESITV-----------EAFWEGRLVPESHAASLPFFPPHK 636
+ ++I +M + GK PK+V L ++K+D+++R T SF F+ V + + + V G+IRY+P++ ++ET P + +ED++ +V E FW GRL+P + F P K
Sbjct: 373 NNIDIEISMFEK-GKVPKIVNLREIKDDMQTRFINTASDSFEFKAHV-----EGEGV-VEGIIRYHPFLYDKETYPEDLSYVMDDEDEDCFSVDKAARGKRPIFECFWNGRLIPYTTVEDFEFCAPPK 493
BLAST of mRNA_E-fasciculatus_F_contig1005.63.1 vs. uniprot
Match: A0A0G2L6F5_DANRE (Structural maintenance of chromosomes flexible hinge domain-containing 1 n=2 Tax=Danio rerio TaxID=7955 RepID=A0A0G2L6F5_DANRE) HSP 1 Score: 55.8 bits (133), Expect = 1.630e-5 Identity = 36/126 (28.57%), Postives = 64/126 (50.79%), Query Frame = 1 Query: 289 NQSTLEITCTMHNRSGKEPKMVRLSDVKNDLESRLNLTHKASFPFRMEVPDPRDKAKRLPVTGVIRYYPYVKERET---RPRARPHEEDDESITV------------EAFWEGRLVPESHAASLPF 621
+ S ++I ++ RS + P+++ L +V ND+++ + +F F+ AK V G+IRY+P++ +RET P A E++DE + V E FW GRL+P + + P+
Sbjct: 364 SSSNIDIQISLFERSTRVPRIINLREVDNDMQTLYVRSSANTFEFKAT------GAKDSLVEGLIRYHPFLYDRETFPVDPYAASAEDEDEELEVLNPEGRGKRPIFECFWNGRLIPYTTVSEFPW 483 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1005.63.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 13 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1005.63.1 >prot_E-fasciculatus_F_contig1005.63.1 ID=prot_E-fasciculatus_F_contig1005.63.1|Name=mRNA_E-fasciculatus_F_contig1005.63.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=206bp MRDQHVEWLKNHKRSLMLELASIYHYYLHPGHCPDGIRRENDDPILFGDDback to top mRNA from alignment at E-fasciculatus_F_contig1005:17118..20753+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1005.63.1 ID=mRNA_E-fasciculatus_F_contig1005.63.1|Name=mRNA_E-fasciculatus_F_contig1005.63.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3636bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1005:17118..20753+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1005:17118..20753+ >mRNA_E-fasciculatus_F_contig1005.63.1 ID=mRNA_E-fasciculatus_F_contig1005.63.1|Name=mRNA_E-fasciculatus_F_contig1005.63.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1236bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1005:17118..20753+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |