mRNA_E-fasciculatus_F_contig10043.58.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig10043.58.1 vs. uniprot
Match: D7G7K6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7K6_ECTSI) HSP 1 Score: 166 bits (419), Expect = 2.780e-50 Identity = 85/88 (96.59%), Postives = 88/88 (100.00%), Query Frame = 1 Query: 1 LQYNSKVRLGRGFNVEELKEAGISRKTALTIGIAVDHRRTNKSEESFAANVARLKEYRANLIIFPRGSKHLPKKGDSSLEEQKAATQV 264
++YNSKVRLGRGFNVEELKEAGIS+KTALTIGIAVDHRRTNKSEESFAANVARLKEYRANLIIFPRGSKHLPKKGDSSLEEQKAATQV
Sbjct: 62 IKYNSKVRLGRGFNVEELKEAGISKKTALTIGIAVDHRRTNKSEESFAANVARLKEYRANLIIFPRGSKHLPKKGDSSLEEQKAATQV 149
BLAST of mRNA_E-fasciculatus_F_contig10043.58.1 vs. uniprot
Match: A0A7S4PSP4_9DINO (60S ribosomal protein L13 (Fragment) n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4PSP4_9DINO) HSP 1 Score: 118 bits (296), Expect = 3.170e-32 Identity = 61/87 (70.11%), Postives = 71/87 (81.61%), Query Frame = 1 Query: 4 QYNSKVRLGRGFNVEELKEAGISRKTALTIGIAVDHRRTNKSEESFAANVARLKEYRANLIIFPRGSKHLPKKGDSSLEEQKAATQV 264
+Y+SK+R GRGF+++ELKEAGIS+K A TIGIAVDHRRTNKS E+ ANVARL EY+A LI+FPR S PKKGDSS E AATQV
Sbjct: 42 KYSSKIRAGRGFSLDELKEAGISKKLARTIGIAVDHRRTNKSVEAMQANVARLNEYKAKLIVFPRKSNQKPKKGDSSPAETSAATQV 128
BLAST of mRNA_E-fasciculatus_F_contig10043.58.1 vs. uniprot
Match: A0A4S2N1Z8_9PEZI (60S ribosomal protein L13 n=1 Tax=Ascodesmis nigricans TaxID=341454 RepID=A0A4S2N1Z8_9PEZI) HSP 1 Score: 114 bits (286), Expect = 4.420e-30 Identity = 62/88 (70.45%), Postives = 70/88 (79.55%), Query Frame = 1 Query: 1 LQYNSKVRLGRGFNVEELKEAGISRKTALTIGIAVDHRRTNKSEESFAANVARLKEYRANLIIFPRGSKHLPKKGDSSLEEQKAATQV 264
++YN KVR GRGF +EELK AG++RK AL+IGI VDHRR N SEES NVARLKEYR+NLIIFPR +K PKKGDSS EE K A QV
Sbjct: 63 IKYNRKVRAGRGFTLEELKAAGVARKFALSIGIPVDHRRRNTSEESLQINVARLKEYRSNLIIFPRKAK-APKKGDSSAEEIKEARQV 149
BLAST of mRNA_E-fasciculatus_F_contig10043.58.1 vs. uniprot
Match: A0A1V9ZEJ6_9STRA (60S ribosomal protein L13 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZEJ6_9STRA) HSP 1 Score: 111 bits (278), Expect = 6.570e-29 Identity = 58/87 (66.67%), Postives = 68/87 (78.16%), Query Frame = 1 Query: 1 LQYNSKVRLGRGFNVEELKEAGISRKTALTIGIAVDHRRTNKSEESFAANVARLKEYRANLIIFPRGSKHLPKKGDSSLEEQKAATQ 261
++Y SKVR GRGF ++ELKEAGISRK ALTIGIAVD+RRTNKS ES ANV RLK Y++ L++FPR PK GDS+LEE K A Q
Sbjct: 63 VKYGSKVRAGRGFTLDELKEAGISRKQALTIGIAVDYRRTNKSVESLQANVQRLKTYKSKLVVFPRKRASKPKHGDSTLEETKNAVQ 149
BLAST of mRNA_E-fasciculatus_F_contig10043.58.1 vs. uniprot
Match: A0A1Y1KXM0_PHOPY (60S ribosomal protein L13 (Fragment) n=1 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1KXM0_PHOPY) HSP 1 Score: 108 bits (271), Expect = 8.890e-29 Identity = 58/88 (65.91%), Postives = 69/88 (78.41%), Query Frame = 1 Query: 1 LQYNSKVRLGRGFNVEELKEAGISRKTALTIGIAVDHRRTNKSEESFAANVARLKEYRANLIIFPRGSKHLPKKGDSSLEEQKAATQV 264
++YNSK+RLGRGF +EELK AGI RK A TIGIAVDHRR NKS ES NV RLKEY++ LI+FP + + P+KGDSS EE K ATQ+
Sbjct: 31 IRYNSKLRLGRGFTLEELKSAGIHRKEARTIGIAVDHRRVNKSVESLQRNVQRLKEYKSRLILFPLKA-NKPRKGDSSAEELKMATQL 117
BLAST of mRNA_E-fasciculatus_F_contig10043.58.1 vs. uniprot
Match: A0A024TY88_9STRA (60S ribosomal protein L13 n=4 Tax=Aphanomyces TaxID=100860 RepID=A0A024TY88_9STRA) HSP 1 Score: 111 bits (277), Expect = 9.060e-29 Identity = 56/88 (63.64%), Postives = 69/88 (78.41%), Query Frame = 1 Query: 1 LQYNSKVRLGRGFNVEELKEAGISRKTALTIGIAVDHRRTNKSEESFAANVARLKEYRANLIIFPRGSKHLPKKGDSSLEEQKAATQV 264
++Y SKVR GRGF ++ELKEAGISRK ALTIG++VD+RRTNKS ES ANV RLK Y++ L++FPR PK GDS +EE K ATQ+
Sbjct: 62 IKYGSKVRAGRGFTLDELKEAGISRKQALTIGVSVDYRRTNKSVESLQANVQRLKTYKSKLVLFPRKRASKPKAGDSKVEETKNATQL 149
BLAST of mRNA_E-fasciculatus_F_contig10043.58.1 vs. uniprot
Match: A0A443SMV7_9ACAR (60S ribosomal protein L13 (Fragment) n=1 Tax=Leptotrombidium deliense TaxID=299467 RepID=A0A443SMV7_9ACAR) HSP 1 Score: 110 bits (276), Expect = 1.560e-28 Identity = 58/88 (65.91%), Postives = 69/88 (78.41%), Query Frame = 1 Query: 1 LQYNSKVRLGRGFNVEELKEAGISRKTALTIGIAVDHRRTNKSEESFAANVARLKEYRANLIIFPRGSKHLPKKGDSSLEEQKAATQV 264
++YN K+RLGRGF +EELK AGI+RK A TIGI+VDHRR NKS ES NV RLKEY++ LI+FP+ SK P KGDSS EEQ ATQ+
Sbjct: 65 VKYNMKIRLGRGFTLEELKTAGINRKEARTIGISVDHRRVNKSVESLQRNVQRLKEYKSRLILFPKNSKK-PHKGDSSKEEQNLATQL 151
BLAST of mRNA_E-fasciculatus_F_contig10043.58.1 vs. uniprot
Match: A0A8J6ETY2_ELECQ (60S ribosomal protein L13 n=1 Tax=Eleutherodactylus coqui TaxID=57060 RepID=A0A8J6ETY2_ELECQ) HSP 1 Score: 110 bits (276), Expect = 1.770e-28 Identity = 59/88 (67.05%), Postives = 70/88 (79.55%), Query Frame = 1 Query: 1 LQYNSKVRLGRGFNVEELKEAGISRKTALTIGIAVDHRRTNKSEESFAANVARLKEYRANLIIFPRGSKHLPKKGDSSLEEQKAATQV 264
++Y++KVRLGRGF++EELK AGI++K A TIGI+VDHRR NKS ES NV RLKEYR+ LIIFPR PKKGDSS EE K ATQ+
Sbjct: 64 IRYHTKVRLGRGFSLEELKAAGINKKVARTIGISVDHRRRNKSTESLQTNVQRLKEYRSKLIIFPR-KPTAPKKGDSSAEELKMATQL 150
BLAST of mRNA_E-fasciculatus_F_contig10043.58.1 vs. uniprot
Match: A0A7S2UYA0_9STRA (60S ribosomal protein L13 n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UYA0_9STRA) HSP 1 Score: 110 bits (274), Expect = 2.440e-28 Identity = 55/87 (63.22%), Postives = 68/87 (78.16%), Query Frame = 1 Query: 4 QYNSKVRLGRGFNVEELKEAGISRKTALTIGIAVDHRRTNKSEESFAANVARLKEYRANLIIFPRGSKHLPKKGDSSLEEQKAATQV 264
+Y+SK RLGRGF++ ELKEAGI +K A TIGIAVDHRRTNKS E+ AN+ARL E++A L++FPR S PK GDS+ EE ATQ+
Sbjct: 64 KYSSKTRLGRGFSLAELKEAGIPKKVARTIGIAVDHRRTNKSVEAMQANIARLAEFKARLVVFPRKSNQKPKNGDSAPEETSQATQL 150
BLAST of mRNA_E-fasciculatus_F_contig10043.58.1 vs. uniprot
Match: A0A2D4BG90_PYTIN (60S ribosomal protein L13 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BG90_PYTIN) HSP 1 Score: 110 bits (274), Expect = 2.560e-28 Identity = 58/88 (65.91%), Postives = 70/88 (79.55%), Query Frame = 1 Query: 1 LQYNSKVRLGRGFNVEELKEAGISRKTALTIGIAVDHRRTNKSEESFAANVARLKEYRANLIIFPRGSKHLPKKGDSSLEEQKAATQV 264
++Y SKVR G+GF++EELKEAGIS+K AL+IGIAVD+RRTNKS ES ANV RLK Y+A L+IFPR S + PK GDS+ EE A QV
Sbjct: 63 VKYASKVRAGKGFSLEELKEAGISKKQALSIGIAVDYRRTNKSVESLQANVQRLKAYKAKLVIFPRKSNNKPKHGDSTPEETANAVQV 150 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10043.58.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig10043.58.1 >prot_E-fasciculatus_F_contig10043.58.1 ID=prot_E-fasciculatus_F_contig10043.58.1|Name=mRNA_E-fasciculatus_F_contig10043.58.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=88bp LQYNSKVRLGRGFNVEELKEAGISRKTALTIGIAVDHRRTNKSEESFAANback to top mRNA from alignment at E-fasciculatus_F_contig10043:339..900- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig10043.58.1 ID=mRNA_E-fasciculatus_F_contig10043.58.1|Name=mRNA_E-fasciculatus_F_contig10043.58.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=562bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10043:339..900- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10043:339..900- >mRNA_E-fasciculatus_F_contig10043.58.1 ID=mRNA_E-fasciculatus_F_contig10043.58.1|Name=mRNA_E-fasciculatus_F_contig10043.58.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=528bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10043:339..900- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |