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Homology
BLAST of mRNA_E-fasciculatus_F_contig10041.56.1 vs. uniprot
Match: D8LIS6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIS6_ECTSI) HSP 1 Score: 398 bits (1022), Expect = 5.470e-132 Identity = 248/287 (86.41%), Postives = 251/287 (87.46%), Query Frame = 1 Query: 271 AGAVNGFQSSPMSGTAGIVSASHGPNGIPITYGAAPPAPXXXXXXXXXXXXXXXX--------PRFQPPVRQWQAAEKLVLTAFQLQVSEPLAQQEEAKAFLTNLAKDAGEPPGPVIALVRAVVQPAPWGSGYLVASRRQLTNLCQSNGTPTGFDCLTRYLLGNRYPQPTGPVSNSRVGPGSNRVDTPRVRKCFSALAAQVGNHPDRGQLDYHALGVGRCVFTLRRARVAALAASANAXXLXXXXXXXXXXXXXXXXXA-AVAYHSGNVPTMLSPNPA-VYVNNAPA 1101
AGA NGFQ+ PMSGTAG S H PNGIPI YGA P XXXXXXXXXXXXXXXX PRFQPPVRQWQAAEKLVLTAFQLQV+EPLA QEEAKAFLT LAK AGEPPGPVIALVRAVVQPAPWGSGYLVASRRQLTNLCQSNGTPTGFDCLTRYLLGNRYPQPTGP SNSRVGPGSNRVDTPRVRKCFSALAAQVGNHPDRGQLDYHALGVGRCVFTLRRARVAALAASANA L XXXXXXXXXXXXXX AVAYHS NVP LSP PA VY+NNAPA
Sbjct: 180 AGAANGFQTLPMSGTAGAGSVPHAPNGIPIAYGAPPXXXXXXXXXXXXXXXXXXXXXXXXXGGPRFQPPVRQWQAAEKLVLTAFQLQVNEPLAHQEEAKAFLTGLAKAAGEPPGPVIALVRAVVQPAPWGSGYLVASRRQLTNLCQSNGTPTGFDCLTRYLLGNRYPQPTGPASNSRVGPGSNRVDTPRVRKCFSALAAQVGNHPDRGQLDYHALGVGRCVFTLRRARVAALAASANAAKLGAAXXXXXXXXXXXXXXXXAVAYHS-NVPIRLSPRPAAVYINNAPA 465
BLAST of mRNA_E-fasciculatus_F_contig10041.56.1 vs. uniprot
Match: A0A6H5K430_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K430_9PHAE) HSP 1 Score: 382 bits (982), Expect = 2.890e-119 Identity = 224/270 (82.96%), Postives = 228/270 (84.44%), Query Frame = 1 Query: 271 AGAVNGFQSSPMSGTAGIVSASHGPNGIPITYGAAPPAPXXXXXXXXXXXXXXXX----PRFQPPVRQWQAAEKLVLTAFQLQVSEPLAQQEEAKAFLTNLAKDAGEPPGPVIALVRAVVQPAPWGSGYLVASRRQLTNLCQSNGTPTGFDCLTRYLLGNRYPQPTGPVSNSRVGPGSNRVDTPRVRKCFSALAAQVGNHPDRGQLDYHALGVGRCVFTLRRARVAALAASANAXXLXXXXXXXXXXXXXXXXXAAVAYHSGNVPTMLSP 1068
AGA NGFQSSPMSGTAG S SHGP+GIPIT+GA P XXXXXXXXXXXXXXXX PRF PPVRQWQAAEKLVLTAFQLQVSEPLAQQEEAKAFLT LAK AGEPPGPVIALVRAVVQPAPWGSGYLVASRRQLTNLCQSNGTPTGFDCLTRYLLGNRYPQPTGP S+SRVGPGSNRVDTPRVRKCFSALAAQVGNHPDRGQLDYHALGVGRCVFTLRRARVAALAA AAVAYHS N+PT LSP
Sbjct: 692 AGAANGFQSSPMSGTAGAGSVSHGPSGIPITHGAPPXXXXXXXXXXXXXXXXXXXXXGGPRFHPPVRQWQAAEKLVLTAFQLQVSEPLAQQEEAKAFLTGLAKAAGEPPGPVIALVRAVVQPAPWGSGYLVASRRQLTNLCQSNGTPTGFDCLTRYLLGNRYPQPTGPGSSSRVGPGSNRVDTPRVRKCFSALAAQVGNHPDRGQLDYHALGVGRCVFTLRRARVAALAARL---------APPQSPPPPRPHPAAVAYHS-NIPTRLSP 951
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-03_001400.1 |
| Exons | 4 |
| Model size | 1197 |
| Cds size | 1197 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig10041.56.1 >prot_E-fasciculatus_F_contig10041.56.1 ID=prot_E-fasciculatus_F_contig10041.56.1|Name=mRNA_E-fasciculatus_F_contig10041.56.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=399bp
AATAAGKPAGGAAKSRTPAEKMMAAAAVMNASVAEAIEAANAAAASVAAS
TTINNNPGGGGGGGAGGQQQQEAALDVVGGGESGGGGGASAGAVNGFQSS
PMSGTAGIVSASHGPNGIPITYGAAPPAPGAGAGGGGGGGGGGGGPRFQP
PVRQWQAAEKLVLTAFQLQVSEPLAQQEEAKAFLTNLAKDAGEPPGPVIA
LVRAVVQPAPWGSGYLVASRRQLTNLCQSNGTPTGFDCLTRYLLGNRYPQ
PTGPVSNSRVGPGSNRVDTPRVRKCFSALAAQVGNHPDRGQLDYHALGVG
RCVFTLRRARVAALAASANAAKLGAAAARLAPRPQPPAPPAAVAYHSGNV
PTMLSPNPAVYVNNAPAPPPAGVDADGGGGAAEKDIDVVAEEAGSGGGG back to topmRNA from alignment at E-fasciculatus_F_contig10041:1284..4870- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig10041.56.1 ID=mRNA_E-fasciculatus_F_contig10041.56.1|Name=mRNA_E-fasciculatus_F_contig10041.56.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3587bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10041:1284..4870- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCCGCCACTGCCGCCGGCAAGCCTGCCGGGGGCGCGGCCAAGTCGAGGAC
CCCGGCCGAGAAGATGATGGCCGCGGCGGCGGTGATGAACGCGTCCGTGG
CGGAGGCGATCGAGGCCGCCAACGCGGCGGCGGCGTCCGTCGCAGCCTCG
ACAACCATCAACAACAACCCCGGTGGTGGTGGCGGCGGCGGGGCAGGAGG
CCAGCAGCAACAGGAGGCTGCCCTTGATGTCGTGGGCGGCGGCGAGAGCG
GCGGCGGCGGCGGTGCATCGGCCGGAGCGGTGAACGGGTTTCAGTCGTCA
CCGATGAGTGGCACGGCCGGCATTGTAAGCGCTTCGCATGGCCCTAACGG
CATCCCCATTACTTACGGAGCGGCGCCGCCCGCGCCCGGTGCCGGTGCCG
GCGGCGGCGGCGGCGGCGGCGGCGGTGGTGGCGGTCCGCGGTTCCAGCCT
CCGGTCCGCCAGTGGCAGGTGCGTAGCGCGAGACGGAGAGAGAGAGCAGA
GCGCGAGCGCGATGGCAAGAGCTTAAGCATTTCGGCGTATGTTCCCCCGC
ATGAGTTTTTTATTCCATCCATCCATCCCACCCGTCCAAACCGAACCATT
CTGTTTGCGTTTCTTTTTGTCGGCGGGCGGACTTGGCGCGCTCCTGATGA
TGATGCCGGCCGTTGAAAACCGCGTGCCCCCCGTTTTCGTCCTTGCCTTC
TCTTGTCGGACTTCCGGCCGTGTACCTTATTTCGGCATACTGTACACTGT
CGCGTTCCGATATATACACAGTATACATGATATTTATGCTCTTTTTTTAC
TCGCCCATGTATAGTCTATACCCCTTCTCACCTGACCAGTTATGCATATT
TTTTACCCTTTTTTTTTTACCTGCCCATGCATGTATATATGTACCCTTTC
TTCACCTGATATATATATATATGTGTGTGCCCTTCTTTTTTACCCGACCA
GGCCGCGGAGAAGCTAGTCCTCACTGCATGTACCCTTTTTTTACCTGATA
CATATATATATATGTGTGTGCCCTTCCTTTTTACCCGACCAGGCCGCAGA
GAAGCTAGTCCTCACCGCCTTCCAGCTCCAGGTGAGCGAGCCGCTGGCCC
AGCAAGAGGAGGCAAAGGCTTTCCTGACAAACCTCGCGAAGGACGCGGGG
GAGCCGCCCGGCCCCGTCATCGCCCTTGTCCGCGCCGTGGTTCAGCCTGC
CCCGTGGGGCTCGGGCTATCTAGTGGTGAGTGCCGTGCCTGCGGCGGGGT
AATTGCTTGTGCTGCCTTTGATTTATCATCTTGCAGGTGGGTGGGGTGTG
GTCAGGGGGCATGATATATTCCATTCCTTCGAAAAAAAAATCAAAAAGAG
AAACGAAAATGCGATTTTTCGTATGGGCATGTTTGCTTCTCCCCTTTCGA
AACATTTAACATTACCATTGTGACGCCACATCGCCCCGTCTTGCCGCCTT
ACTCGCTCCGTGGTGTGTACATGCGCGGCTCGTTCGCTCGCCTTCCCCTA
CTACCCAGACCCTTTGAAGTACTGTACACTGTACATGCATCGTTGCGTGC
GAAGGTTAAGTTAGCCCCCGGTCCTTGCTCCCACCAAGCGCACCCCTTTC
CCCCCATCCTCTTATAATAACTATGCCAACCCGACCCTGTCCCCTGTCCC
CTGTCCCCTGTTACCGGTCTCCTGTCCCCTGTTACCGGTCTCCTGTCCCC
TGTCCCCTGTTCCCTGTCCCCTGTTACCGGTCTCCTGTCCCCTGTTACCG
GTCTCCTGTCTCCTGTTACCGGTTGCCTTTCGACTTCTTTGCTCCATTTT
AGGCGAGCCGGCGCCAGCTGACCAACCTTTGCCAGAGCAACGGCACGCCT
ACGGGGTTCGACTGCCTCACCAGGTACCTCCTCGGCAACCGCTACCCTCA
GCCGACGGGGCCGGTGTCCAACAGCCGGGTCGGGCCGGGTTCGAACCGCG
TCGACACTCCACGGGTCCGGAAGTGCTTCTCGGCCCTTGCCGCCCAGGTG
TGTGAGGGTGGTGGTGGTGGTGTCTTTTGTGTGTGTATTGTTATTATTAG
CATCGACCGCGCTAACCGGCAGACAATAGCCCTTCCTTATCCGTGGAACT
CCGTTTGTGCATACACTCCAATACAGAGTAGATTTTGGATGCATTGCATT
AAATGGTCCGTTCTCTGGAGCAAGCTTGGCGAACCCTGGTGCACACAGCC
CCGCCTTTTGGTGAATCCCCCAATCTCGTGGAACTCCGTCTTGGACATAC
ACTCAAACACAGCAGCACCTGCGTTGCAGCTCATGGAAAAAAGGCCTTTT
TTTCCTGGCAACAGTCACGATAGGACGGTGCCCCCTTACTCTTCTTTGTA
TGGGGTTTGAGGTTATTTTGGAATAGCTCTCGCTGTAGTGCCGATCCCCA
ATTATTGACCGATTCATCTCAATCTGTGGTGCCTAAACTACACTGTTCCC
GAACGCCAGTGATTTTCATGTACGTTCTGGACCGCGACAGCGCTGCAAAG
TCTGGCCAGAGGCCCCGTGACGACATAAATATAGTGACGTGGCCGTTTTG
TTTTCCACGCGCTAATTGCGCCACTGCCAACTACTCGCGTTTAGAGAGGT
AGTTGGTGTCGATTCTGGGTGACCTTTGTAGACCCGTGGCGAGCGATATA
ATGCTGATCCAAAATTCGCTACTTGTGCATTGAGTTCTGTGGTTATCCTT
CTGCTGTGTGGCCAAGTTGCGAAGGACGTAGTCCCGTTTTCGGACCGCGA
CAGCTTGCGGTAGTTGGCCACCCAAAGAGCTTAAAAACAGGGCTTTCGCA
ACAGCAACCGATCGGCATGGTGAAGCAAATCTCGAGCTGAAAGGAAAATC
ACGGCGTGAAAGCTGCTTGCGGACGTGGACTAGAACTATGTTGGGCTGGT
CTCCCAGTTTCATCGAGATCCGCGGTCTGTGCCAGTAGTACCAGCGGTGG
CTGACAGGGTGACCTGGAGTGGGCTGAGCAGCAAAAATTGAGGGGGGTTC
CGGAAAATTGTTGGGGTACCCAATATTTTTTTGTCAGCATATGTTTTTGA
GTTTTCATGGGCTGCAACGCAGGTGGAAGAGTCCTAGGATGCATTACATT
ACAGAGGCTACACTCCTTTGTTCCGTTCTGCGGCGGCAAGCTTGCCGAAC
CCGTGTGATTGGCGAAGCTGTTGTCCCGATCTATCGACTGATCCTTCCTT
CTCGTGGAACGCCGTCTGAACCAACCGTCTTTTCAGGTGGGCAACCACCC
GGACCGCGGGCAGCTGGACTACCACGCCCTCGGCGTCGGCAGGTGCGTCT
TCACGCTCCGGAGGGCCCGCGTCGCGGCCCTCGCCGCCTCCGCCAACGCC
GCCAAGCTCGGCGCGGCCGCCGCCAGGCTGGCACCGCGCCCCCAGCCGCC
GGCACCCCCGGCCGCGGTGGCCTACCACAGCGGCAACGTCCCTACCATGC
TGTCACCTAATCCCGCTGTTTACGTCAACAACGCTCCTGCTCCCCCCCCC
GCCGGGGTTGATGCTGACGGCGGCGGTGGTGCCGCCGAGAAGGACATCGA
CGTGGTTGCCGAAGAGGCCGGCAGCGGCGGCGGCGGC back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig10041:1284..4870- >mRNA_E-fasciculatus_F_contig10041.56.1 ID=mRNA_E-fasciculatus_F_contig10041.56.1|Name=mRNA_E-fasciculatus_F_contig10041.56.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2394bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10041:1284..4870- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCCGCCACTGCCGCCGGCAAGCCTGCCGGGGGCGCGGCCAAGTCGAGGAC
CCCGGCCGAGAAGATGATGGCCGCGGCGGCGGTGATGAACGCGTCCGTGG
CGGAGGCGATCGAGGCCGCCAACGCGGCGGCGGCGTCCGTCGCAGCCTCG
ACAACCATCAACAACAACCCCGGTGGTGGTGGCGGCGGCGGGGCAGGAGG
CCAGCAGCAACAGGAGGCTGCCCTTGATGTCGTGGGCGGCGGCGAGAGCG
GCGGCGGCGGCGGTGCATCGGCCGGAGCGGTGAACGGGTTTCAGTCGTCA
CCGATGAGTGGCACGGCCGGCATTGTAAGCGCTTCGCATGGCCCTAACGG
CATCCCCATTACTTACGGAGCGGCGCCGCCCGCGCCCGGTGCCGGTGCCG
GCGGCGGCGGCGGCGGCGGCGGCGGTGGTGGCGGTCCGCGGTTCCAGCCT
CCGGTCCGCCAGTGGCAGGCCGCCACTGCCGCCGGCAAGCCTGCCGGGGG
CGCGGCCAAGTCGAGGACCCCGGCCGAGAAGATGATGGCCGCGGCGGCGG
TGATGAACGCGTCCGTGGCGGAGGCGATCGAGGCCGCCAACGCGGCGGCG
GCGTCCGTCGCAGCCTCGACAACCATCAACAACAACCCCGGTGGTGGTGG
CGGCGGCGGGGCAGGAGGCCAGCAGCAACAGGAGGCTGCCCTTGATGTCG
TGGGCGGCGGCGAGAGCGGCGGCGGCGGCGGTGCATCGGCCGGAGCGGTG
AACGGGTTTCAGTCGTCACCGATGAGTGGCACGGCCGGCATTGTAAGCGC
TTCGCATGGCCCTAACGGCATCCCCATTACTTACGGAGCGGCGCCGCCCG
CGCCCGGTGCCGGTGCCGGCGGCGGCGGCGGCGGCGGCGGCGGTGGTGGC
GGTCCGCGGTTCCAGCCTCCGGTCCGCCAGTGGCAGGCCGCAGAGAAGCT
AGTCCTCACCGCCTTCCAGCTCCAGGTGAGCGAGCCGCTGGCCCAGCAAG
AGGAGGCAAAGGCTTTCCTGACAAACCTCGCGAAGGACGCGGGGGAGCCG
CCCGGCCCCGTCATCGCCCTTGTCCGCGCCGTGGTTCAGCCTGCCCCGTG
GGGCTCGGGCTATCTAGTGGCCGCAGAGAAGCTAGTCCTCACCGCCTTCC
AGCTCCAGGTGAGCGAGCCGCTGGCCCAGCAAGAGGAGGCAAAGGCTTTC
CTGACAAACCTCGCGAAGGACGCGGGGGAGCCGCCCGGCCCCGTCATCGC
CCTTGTCCGCGCCGTGGTTCAGCCTGCCCCGTGGGGCTCGGGCTATCTAG
TGGCGAGCCGGCGCCAGCTGACCAACCTTTGCCAGAGCAACGGCACGCCT
ACGGGGTTCGACTGCCTCACCAGGTACCTCCTCGGCAACCGCTACCCTCA
GCCGACGGGGCCGGTGTCCAACAGCCGGGTCGGGCCGGGTTCGAACCGCG
TCGACACTCCACGGGTCCGGAAGTGCTTCTCGGCCCTTGCCGCCCAGGCG
AGCCGGCGCCAGCTGACCAACCTTTGCCAGAGCAACGGCACGCCTACGGG
GTTCGACTGCCTCACCAGGTACCTCCTCGGCAACCGCTACCCTCAGCCGA
CGGGGCCGGTGTCCAACAGCCGGGTCGGGCCGGGTTCGAACCGCGTCGAC
ACTCCACGGGTCCGGAAGTGCTTCTCGGCCCTTGCCGCCCAGGTGGGCAA
CCACCCGGACCGCGGGCAGCTGGACTACCACGCCCTCGGCGTCGGCAGGT
GCGTCTTCACGCTCCGGAGGGCCCGCGTCGCGGCCCTCGCCGCCTCCGCC
AACGCCGCCAAGCTCGGCGCGGCCGCCGCCAGGCTGGCACCGCGCCCCCA
GCCGCCGGCACCCCCGGCCGCGGTGGCCTACCACAGCGGCAACGTCCCTA
CCATGCTGTCACCTAATCCCGCTGTTTACGTCAACAACGCTCCTGCTCCC
CCCCCCGCCGGGGTTGATGCTGACGGCGGCGGTGGTGCCGCCGAGAAGGA
CATCGACGTGGTTGCCGAAGAGGCCGGCAGCGGCGGCGGCGGCGTGGGCA
ACCACCCGGACCGCGGGCAGCTGGACTACCACGCCCTCGGCGTCGGCAGG
TGCGTCTTCACGCTCCGGAGGGCCCGCGTCGCGGCCCTCGCCGCCTCCGC
CAACGCCGCCAAGCTCGGCGCGGCCGCCGCCAGGCTGGCACCGCGCCCCC
AGCCGCCGGCACCCCCGGCCGCGGTGGCCTACCACAGCGGCAACGTCCCT
ACCATGCTGTCACCTAATCCCGCTGTTTACGTCAACAACGCTCCTGCTCC
CCCCCCCGCCGGGGTTGATGCTGACGGCGGCGGTGGTGCCGCCGAGAAGG
ACATCGACGTGGTTGCCGAAGAGGCCGGCAGCGGCGGCGGCGGC back to top
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