mRNA_E-fasciculatus_F_contig10035.51.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig10035.51.1 vs. uniprot
Match: D7FPM5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPM5_ECTSI) HSP 1 Score: 695 bits (1794), Expect = 2.930e-248 Identity = 334/368 (90.76%), Postives = 348/368 (94.57%), Query Frame = 2 Query: 272 QMPGCRKSLAAGLTALCLGWQAAVVGASSCAYRFASFPNISDLPVWNLPTALPWGPETWTFGSANPIVYLADDGTEEAVDCTGDSWRYQAADGEWKTELSFPATWESSDAAPMVSFEGFFNATGDGEVTVSGIPASIAPAVSDSLYGRNIELALTCNQEDPVVLEEDSCVQFQVDFTNYSPTFDVNMALFRFEDPALPGIEMPLAQPLSPGDIQLNEGNPIVELDGSEASWGCNGDMAEYLGEDGEWYFWFTGSDGQPYNLTHVFYTTEFDQLHIATIQSAWSPNLEAALNNRYVRLLIHCSNQVNHEDGYLIFKVGGQDLDESCEDHSGLCVDDGPDDDIDSGVRCETGLGLAYVLAFVVGVFSLLL 1375
QMP CR SLAAGLTALCLG QAAV ASSCAYRFASFPN+SDLPVWNLP +LPWGPE TFG ANPIVYLADDGTEEAVDCTGDSWRYQAA+GEWKTELSFPATWESSDAAPMVSFEGFFNATGDGE+TVSGIP SIAPAVSDSLYGRNIELALTCNQED +V+EEDSCV FQVDFTNYSPTFDVNMALFRFEDPA+PGIEMPLAQPLSPGDIQLNEGNP+VELDGSE SWGCNGDMAEYLGEDGEWYFWFTGSDGQPYNLTHVFYTT+FDQLHIATIQSAWSPNLEAAL+NRYVRLLIHCSNQVNHEDGYLIFK+GGQ+ DESC+DHSGLCV DGPDDD DSGVRCETG+GLAYVL FVV SLLL
Sbjct: 3 QMPRCRHSLAAGLTALCLGRQAAVARASSCAYRFASFPNVSDLPVWNLPASLPWGPEASTFGGANPIVYLADDGTEEAVDCTGDSWRYQAANGEWKTELSFPATWESSDAAPMVSFEGFFNATGDGEITVSGIPTSIAPAVSDSLYGRNIELALTCNQEDQIVMEEDSCVLFQVDFTNYSPTFDVNMALFRFEDPAVPGIEMPLAQPLSPGDIQLNEGNPVVELDGSEVSWGCNGDMAEYLGEDGEWYFWFTGSDGQPYNLTHVFYTTDFDQLHIATIQSAWSPNLEAALHNRYVRLLIHCSNQVNHEDGYLIFKIGGQEFDESCDDHSGLCVHDGPDDDTDSGVRCETGIGLAYVLTFVV--LSLLL 368
BLAST of mRNA_E-fasciculatus_F_contig10035.51.1 vs. uniprot
Match: A0A6H5L4X3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4X3_9PHAE) HSP 1 Score: 344 bits (882), Expect = 9.340e-112 Identity = 182/296 (61.49%), Postives = 204/296 (68.92%), Query Frame = 2 Query: 497 EEAVDCTGDSWRYQAADGEWKTELSFPATWESSDAAPMVSFEGFFNATGDGEVTVSGIPASIAPAVSDSLYGRNIELALTCNQEDPVVLEEDSCVQFQVDFTNYSPTFDVNMALFRFEDPALPGIEMPLAQPLSPGDIQLNEGNPIVELDGSEASWGCNGDMAEYLGEDGEWYFWFTGSDGQPYNLTHVFYTTEFDQLHIATIQSAWSPNLEAALNNRYVRLLIHCSNQVNHEDGYLIFKVGGQDLDESCEDHSGLCVDDGPDDDIDSGVRCETGLGLAYVLAFVVGVFSLLLVLD 1384
EEA+DCTGDSWR+QAADGEWKTELSFPATWESSDAAP+VSFEGFF A GD EV +SGIP SIAPAV+DSLYGRNIEL + P S ++ ++ ++ +W +G AEYL EDG WY WFTGSDGQ YNLTHVF+TT+FDQLHIATIQSA S NLEAA +NRYVRLLI CSNQVNHEDGYLIF+VGGQD DESC+DH GLCVDD PD D DSGVRCETG+G+AYVL FVVG+ SLLLVLD
Sbjct: 15 EEAIDCTGDSWRHQAADGEWKTELSFPATWESSDAAPIVSFEGFFYAIGDVEVMISGIPTSIAPAVADSLYGRNIELLWLATKRIP-----SSWRSILACYSKWALRTTAQRSML---------------------------------------TWRSSGSKAEYLREDGAWYSWFTGSDGQRYNLTHVFFTTDFDQLHIATIQSARSLNLEAASHNRYVRLLILCSNQVNHEDGYLIFQVGGQDFDESCDDHLGLCVDDDPDGDTDSGVRCETGIGIAYVLTFVVGMLSLLLVLD 266
BLAST of mRNA_E-fasciculatus_F_contig10035.51.1 vs. uniprot
Match: D7FPM7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPM7_ECTSI) HSP 1 Score: 261 bits (668), Expect = 2.990e-78 Identity = 147/319 (46.08%), Postives = 203/319 (63.64%), Query Frame = 2 Query: 347 GASSCAYRFASFPNISDLPVWNLPTALPWGPETWTFGSANPIVYLADDGTEEA--VDCTGDSWRYQAADG-EWKTELSFPATWESSDAAPMVSFEGFFNATGDGEVTVSGIPASIAPAVSDSLYGRNIELALTCNQEDPVVLEEDSCVQFQVDFTNYSPTFDVNM---ALFRFEDPALPGIEMPLAQPLSPGDIQLNEGNPIVELDGSEASWGCNGDMAEYLGEDGEWYFWFTGSDGQPYNLTHVFYTTEFDQLHIATIQSAWSPNLEAALNNRYVRLLIHCSNQVNHEDGYLIFKVGGQD--LDESCEDHSGLCVDDG 1279
G + CA+R +I+ P+ + + G NPIVYL ++ + V+C+ DSWRY + + T ++FP +++ A VS G F A E+ + A A A+SDSL+GR IE+AL+C+Q V E DSC+QFQ++FTN SP D + AL+RF++PA+PG+ +PLA SPGD+ LNEGNPIV++DGS GCNG+++EYLGEDGEWY++FTGSDG YN+THVFY TE D L++A IQ+ WSPNLE AL NR VR+ I+C+N EDGY+IFKVG + D + D+ + D G
Sbjct: 22 GDTECAFRLDGHLDITQ-PLTLIAPYVDPGSGYRLINPYNPIVYLVNENVYDRYQVNCSVDSWRYLLDNNVTYATNVTFPDA-NATENATEVSVPGLFAAESH-ELFIDSYSADKAVAISDSLFGRTIEVALSCDQVQTVTAE-DSCLQFQLNFTNGSPEVDKELLESALYRFQEPAVPGVVLPLAGAYSPGDVWLNEGNPIVDIDGSVTDEGCNGEVSEYLGEDGEWYYYFTGSDGNAYNMTHVFYATEQDHLNVAKIQAPWSPNLERALFNRTVRMSIYCNNVNEREDGYVIFKVGDGNGYFDINVADYEAILTDSG 336
BLAST of mRNA_E-fasciculatus_F_contig10035.51.1 vs. uniprot
Match: D8LRK2_ECTSI (WSC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRK2_ECTSI) HSP 1 Score: 172 bits (435), Expect = 3.770e-42 Identity = 107/270 (39.63%), Postives = 155/270 (57.41%), Query Frame = 2 Query: 479 LADDGTEEAVD--CTGDSWRY-QAADGEWKTELSFPATWESSDAAPMVSFEGFFNATGDG--EVTVSGIPASIAPAVSDSLYGRNIELALTCNQEDPVVLEEDSCVQFQVDFTNYSPTFDVNMALFRFEDPALPGIEMPLAQPLSPGDIQLNEGNPIVELDGSEASWGCNGDMAEYLGEDGEWYFWFTGSDGQPYNLTHVFYTTEFDQLHIATIQSAWSPNLEAALNNRYVRLLIHCSNQVNHEDGYLIFKVGGQDLDESCEDHSGLCVD 1273
+ ++ EE+ + CTG S ++ +GEW++ T+E+ D + F+ + DG E+ V+ I + +AP++ + L ++L LTC +++ VV DSCV F+ FTN+SP D A +RF DPALP ++P A P SPGD+ L N +V G+ CNGD AEY GEDG WY F SDG+ + L HVFY T+ D L+ ATIQ+ W PNL L NR VRL ++C+N E YL +V G+ +C+D LC +
Sbjct: 412 ITENALEESEERGCTGSSAQFWDPKNGEWRS------TFETIDGESH-DLDMFYMSLVDGVNELWVTEIESWMAPSLYNQLQYNYVKLILTCPEDNVVV---DSCVIFEPTFTNWSPDVDGAAAGYRFSDPALPSFDIPEAVPNSPGDVLLTTSNSVVTKTGATTETYCNGDSAEYSGEDGYWYNAFVKSDGETHELKHVFYPTQRD-LYAATIQANWEPNLRGLLENRIVRLQVYCTNDERAE--YLYIRVSGESA--TCDDIEDLCTE 666
BLAST of mRNA_E-fasciculatus_F_contig10035.51.1 vs. uniprot
Match: D7G7E4_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7E4_ECTSI) HSP 1 Score: 169 bits (429), Expect = 1.300e-41 Identity = 104/257 (40.47%), Postives = 148/257 (57.59%), Query Frame = 2 Query: 512 CTGDSWRY-QAADGEWKTELSFPATWESSDAAPMVSFEGFFNATGDG--EVTVSGIPASIAPAVSDSLYGRNIELALTCNQEDPVVLEEDSCVQFQVDFTNYSPTFDVNMALFRFEDPALPGIEMPLAQPLSPGDIQLNEGNPIVELDGSEASWGCNGDMAEYLGEDGEWYFWFTGSDGQPYNLTHVFYTTEFDQLHIATIQSAWSPNLEAALNNRYVRLLIHCSNQVNHEDGYLIFKVGGQDLDESCEDHSGLCVD 1273
CTG S ++ +GEW++ T+E+ D + F+ + DG E+ V+ I + +AP++ + L ++L LTC +++ VV DSCV F+ FTN+SP D A +RF DPALP ++P A P SPGD+ L N +V G+ CNGD AEY GEDG WY F S+G+ + L HVFY T+ D L+ ATIQ+ W PNL L NR VRL ++C+N E YL +V G+ +C+D LC +
Sbjct: 364 CTGSSAQFWDPKNGEWRS------TFETIDGESH-DLDMFYMSLVDGVNELWVTEIESWMAPSLYNQLQYNYVKLILTCPEDNVVV---DSCVIFEPTFTNWSPDVDGAAAGYRFSDPALPSFDIPEAVPNSPGDVLLTTSNSVVTRTGATTETYCNGDSAEYSGEDGYWYNEFVKSNGETHELKHVFYPTQRD-LYAATIQANWEPNLRGLLENRIVRLQVYCTNDERAE--YLYIRVSGESA--TCDDIEDLCTE 605
BLAST of mRNA_E-fasciculatus_F_contig10035.51.1 vs. uniprot
Match: D7G672_ECTSI (WSC domain-containing protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G672_ECTSI) HSP 1 Score: 170 bits (431), Expect = 1.650e-41 Identity = 105/256 (41.02%), Postives = 146/256 (57.03%), Query Frame = 2 Query: 512 CTGDSWRY-QAADGEWKTELSFPATWESSDAAPMVSFEGFFNATGDG--EVTVSGIPASIAPAVSDSLYGRNIELALTCNQEDPVVLEEDSCVQFQVDFTNYSPTFDVNMALFRFEDPALPGIEMPLAQPLSPGDIQLNEGNPIVELDGSEASWGCNGDMAEYLGEDGEWYFWFTGSDGQPYNLTHVFYTTEFDQLHIATIQSAWSPNLEAALNNRYVRLLIHCSNQVNHEDGYLIFKVGGQDLDESCEDHSGLCV 1270
CTG S ++ +GEW++ T+E+ D + F+ + DG E+ V+ I + +AP++ + L ++L LTC +++ VV DSCV F+ FTN+SP D A +RF DPALP ++P A P SPGD+ L N +V G+ CNGD AEY GEDG WY F SDG + L HVFY T+ D L+ ATIQ+ W PNL L NR VRL ++C+N E YL +V G+ +C+D LC
Sbjct: 424 CTGSSAQFWDPKNGEWRS------TFETIDGESH-DLDMFYMSLVDGVNELWVTEIESWMAPSLYNQLQYNYVKLILTCPEDNVVV---DSCVIFEPTFTNWSPDVDGAAAGYRFSDPALPSFDIPEAVPNSPGDVLLTTSNSVVTKTGATTETYCNGDSAEYSGEDGYWYNAFVKSDGDTHELKHVFYPTQRD-LYAATIQANWEPNLRGLLENRIVRLRVYCTNDERAE--YLYIRVSGESA--TCDDIEDLCT 664 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10035.51.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 6 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig10035.51.1 >prot_E-fasciculatus_F_contig10035.51.1 ID=prot_E-fasciculatus_F_contig10035.51.1|Name=mRNA_E-fasciculatus_F_contig10035.51.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=371bp MPGCRKSLAAGLTALCLGWQAAVVGASSCAYRFASFPNISDLPVWNLPTAback to top mRNA from alignment at E-fasciculatus_F_contig10035:1769..5011- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig10035.51.1 ID=mRNA_E-fasciculatus_F_contig10035.51.1|Name=mRNA_E-fasciculatus_F_contig10035.51.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3243bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10035:1769..5011- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10035:1769..5011- >mRNA_E-fasciculatus_F_contig10035.51.1 ID=mRNA_E-fasciculatus_F_contig10035.51.1|Name=mRNA_E-fasciculatus_F_contig10035.51.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2226bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10035:1769..5011- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |