mRNA_E-fasciculatus_F_contig10034.50.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig10034.50.1 vs. uniprot
Match: D7G0S9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0S9_ECTSI) HSP 1 Score: 209 bits (531), Expect = 2.760e-60 Identity = 108/111 (97.30%), Postives = 109/111 (98.20%), Query Frame = 1 Query: 1 DPTSKSLVFSQFNSSLEWLKRTLPKRGFQFRTLTGNMSRTQRTAALTAFAKDPPTTVFLLSVRSGAVGINLTQANNVFLLEPLLNLALEKQAIGRVYRLGQTRPVTVSACV 333 DPTSKSLVFSQFNSSLEWLKRTLPKRGFQFRTLTGNMSRTQRTAALTAFAKDPPTTVFLLSVRSGAVGINLTQANNVFLLEPLLNLALEKQAIGRVYRLGQTRPVTV+ V Sbjct: 1115 DPTSKSLVFSQFNSSLEWLKRTLPKRGFQFRTLTGNMSRTQRTAALTAFAKDPPTTVFLLSVRSGAVGINLTQANNVFLLEPLLNLALEKQAIGRVYRLGQTRPVTVTKLV 1225
BLAST of mRNA_E-fasciculatus_F_contig10034.50.1 vs. uniprot
Match: A0A6H5KW09_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW09_9PHAE) HSP 1 Score: 206 bits (525), Expect = 1.790e-59 Identity = 106/111 (95.50%), Postives = 109/111 (98.20%), Query Frame = 1 Query: 1 DPTSKSLVFSQFNSSLEWLKRTLPKRGFQFRTLTGNMSRTQRTAALTAFAKDPPTTVFLLSVRSGAVGINLTQANNVFLLEPLLNLALEKQAIGRVYRLGQTRPVTVSACV 333 DPTSKSLVFSQFNSSLEWLKRTLPKRGFQFRTLTG+MSRTQRTAALTAFAKDPPTTVFLLSVRSGAVGINLTQANNVFLLEPLLNLALEKQA+GRVYRLGQTRPVTV+ V Sbjct: 1151 DPTSKSLVFSQFNSSLEWLKRTLPKRGFQFRTLTGSMSRTQRTAALTAFAKDPPTTVFLLSVRSGAVGINLTQANNVFLLEPLLNLALEKQAVGRVYRLGQTRPVTVTKLV 1261
BLAST of mRNA_E-fasciculatus_F_contig10034.50.1 vs. uniprot
Match: A0A7J7PDI8_9CHLO (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7PDI8_9CHLO) HSP 1 Score: 149 bits (376), Expect = 5.260e-44 Identity = 73/107 (68.22%), Postives = 92/107 (85.98%), Query Frame = 1 Query: 1 DPTSKSLVFSQFNSSLEWLKRTLPKRGFQFRTLTGNMSRTQRTAALTAFAKDPPTTVFLLSVRSGAVGINLTQANNVFLLEPLLNLALEKQAIGRVYRLGQTRPVTV 321 DP+SK+LVFSQ+NS+LEWL+R LP+ GF FRT+TG+M++ +R A+ AF DPPTTVFLLS+RSGAVGINLT A++V+LLEP LN ALE+QAIGR +R+GQ R VTV Sbjct: 5 DPSSKALVFSQYNSTLEWLQRRLPEEGFSFRTITGSMAQRKRARAIEAFQSDPPTTVFLLSMRSGAVGINLTAASHVYLLEPCLNPALEEQAIGRAWRMGQQRKVTV 111
BLAST of mRNA_E-fasciculatus_F_contig10034.50.1 vs. uniprot
Match: A0A7S0GC86_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GC86_9STRA) HSP 1 Score: 151 bits (381), Expect = 1.200e-43 Identity = 76/107 (71.03%), Postives = 88/107 (82.24%), Query Frame = 1 Query: 1 DPTSKSLVFSQFNSSLEWLKRTLPKRGFQFRTLTGNMSRTQRTAALTAFAKDPPTTVFLLSVRSGAVGINLTQANNVFLLEPLLNLALEKQAIGRVYRLGQTRPVTV 321 +P SKSLVFSQF S+L+W++ LPKRGF FRTL+G+MS +R AL F DPPTTVFLLS+RSGAVGINLTQAN VF++EP LN ALE QAIGRV+RLGQ RPV V Sbjct: 55 EPNSKSLVFSQFTSTLKWMQEELPKRGFSFRTLSGDMSMPKRAQALREFQSDPPTTVFLLSMRSGAVGINLTQANRVFIMEPALNPALEAQAIGRVHRLGQNRPVEV 161
BLAST of mRNA_E-fasciculatus_F_contig10034.50.1 vs. uniprot
Match: A0A1E7F8K5_9STRA (p-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F8K5_9STRA) HSP 1 Score: 145 bits (367), Expect = 2.290e-40 Identity = 76/107 (71.03%), Postives = 87/107 (81.31%), Query Frame = 1 Query: 1 DPTSKSLVFSQFNSSLEWLKRTLPKRGFQFRTLTGNMSRTQRTAALTAFAKDPPTTVFLLSVRSGAVGINLTQANNVFLLEPLLNLALEKQAIGRVYRLGQTRPVTV 321 D +SKSLVFSQFNS+LE+L+ LPK GFQFRTL+G+MS QR AL F DPPTTVFLLS+R+GAVGINLTQAN VFL+EP N ALE QAIGRV+RLGQ R V + Sbjct: 84 DVSSKSLVFSQFNSTLEYLQTELPKHGFQFRTLSGSMSMKQRAKALRDFQNDPPTTVFLLSMRAGAVGINLTQANRVFLMEPSFNPALEAQAIGRVHRLGQKREVNI 190
BLAST of mRNA_E-fasciculatus_F_contig10034.50.1 vs. uniprot
Match: A0A7S2CG02_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CG02_9STRA) HSP 1 Score: 140 bits (354), Expect = 3.300e-40 Identity = 72/111 (64.86%), Postives = 88/111 (79.28%), Query Frame = 1 Query: 1 DPTSKSLVFSQFNSSLEWLKRTLPKRGFQFRTLTGNMSRTQRTAALTAFAKDPPTTVFLLSVRSGAVGINLTQANNVFLLEPLLNLALEKQAIGRVYRLGQTRPVTVSACV 333 D TSK L+FSQF ++L WL++ LP G FRTLTG M++ QR AL F +DPPTTVFLLSVR+GAVGINLTQAN+VF+LEP+LN ALE QA+GRV+R+GQ R V V+ V Sbjct: 25 DATSKCLIFSQFQATLTWLQQMLPAHGCSFRTLTGKMTQKQRARALRDFQEDPPTTVFLLSVRAGAVGINLTQANHVFILEPILNPALELQAVGRVHRMGQQRHVYVTKFV 135
BLAST of mRNA_E-fasciculatus_F_contig10034.50.1 vs. uniprot
Match: A0A383VRJ5_TETOB (Uncharacterized protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VRJ5_TETOB) HSP 1 Score: 151 bits (381), Expect = 4.150e-40 Identity = 75/107 (70.09%), Postives = 91/107 (85.05%), Query Frame = 1 Query: 1 DPTSKSLVFSQFNSSLEWLKRTLPKRGFQFRTLTGNMSRTQRTAALTAFAKDPPTTVFLLSVRSGAVGINLTQANNVFLLEPLLNLALEKQAIGRVYRLGQTRPVTV 321 DP+SK+LVFSQ+NS+LEWL+R LPK GF FRT+TG+M++ R A+ AF DPPTTVFLLS+RSGAVGINLT A++VFLLEP LN ALE+QAIGR +R+GQ R VTV Sbjct: 605 DPSSKALVFSQYNSTLEWLQRRLPKEGFSFRTITGSMAQRARAKAIEAFQSDPPTTVFLLSMRSGAVGINLTAASHVFLLEPCLNPALEEQAIGRAWRMGQQRKVTV 711
BLAST of mRNA_E-fasciculatus_F_contig10034.50.1 vs. uniprot
Match: A0A383VTQ3_TETOB (Uncharacterized protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VTQ3_TETOB) HSP 1 Score: 151 bits (381), Expect = 4.570e-40 Identity = 75/107 (70.09%), Postives = 91/107 (85.05%), Query Frame = 1 Query: 1 DPTSKSLVFSQFNSSLEWLKRTLPKRGFQFRTLTGNMSRTQRTAALTAFAKDPPTTVFLLSVRSGAVGINLTQANNVFLLEPLLNLALEKQAIGRVYRLGQTRPVTV 321 DP+SK+LVFSQ+NS+LEWL+R LPK GF FRT+TG+M++ R A+ AF DPPTTVFLLS+RSGAVGINLT A++VFLLEP LN ALE+QAIGR +R+GQ R VTV Sbjct: 1525 DPSSKALVFSQYNSTLEWLQRRLPKEGFSFRTITGSMAQRARAKAIEAFQSDPPTTVFLLSMRSGAVGINLTAASHVFLLEPCLNPALEEQAIGRAWRMGQQRKVTV 1631
BLAST of mRNA_E-fasciculatus_F_contig10034.50.1 vs. uniprot
Match: A0A7S2UI45_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UI45_9STRA) HSP 1 Score: 142 bits (357), Expect = 1.440e-39 Identity = 69/107 (64.49%), Postives = 85/107 (79.44%), Query Frame = 1 Query: 1 DPTSKSLVFSQFNSSLEWLKRTLPKRGFQFRTLTGNMSRTQRTAALTAFAKDPPTTVFLLSVRSGAVGINLTQANNVFLLEPLLNLALEKQAIGRVYRLGQTRPVTV 321 +P +KSLVFSQF S+L W++ LPK GFQFRTL+G+M ++R AL F DPPTT+FLLS+R+GA GINLTQAN VFL+EP +N ALE QAIGRVYRLGQ + V + Sbjct: 90 EPEAKSLVFSQFRSTLSWMQEELPKHGFQFRTLSGDMPMSKRACALRDFQNDPPTTIFLLSIRAGACGINLTQANRVFLMEPAMNPALEAQAIGRVYRLGQRKNVEI 196
BLAST of mRNA_E-fasciculatus_F_contig10034.50.1 vs. uniprot
Match: A0A383VY86_TETOB (Uncharacterized protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VY86_TETOB) HSP 1 Score: 147 bits (372), Expect = 7.390e-39 Identity = 74/107 (69.16%), Postives = 89/107 (83.18%), Query Frame = 1 Query: 1 DPTSKSLVFSQFNSSLEWLKRTLPKRGFQFRTLTGNMSRTQRTAALTAFAKDPPTTVFLLSVRSGAVGINLTQANNVFLLEPLLNLALEKQAIGRVYRLGQTRPVTV 321 DP+SK+LVF+Q+NS+LEWLK+ LP GF FR+++G+M QRTAA+ F KDPPTTVFLLSVRSGA GINLT AN+VFLLEP LN ALE+QAIGR +R+GQ R V V Sbjct: 912 DPSSKALVFTQYNSTLEWLKKALPAAGFGFRSISGSMPLNQRTAAIKNFQKDPPTTVFLLSVRSGACGINLTAANHVFLLEPCLNPALEEQAIGRAWRMGQRREVVV 1018 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10034.50.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig10034.50.1 >prot_E-fasciculatus_F_contig10034.50.1 ID=prot_E-fasciculatus_F_contig10034.50.1|Name=mRNA_E-fasciculatus_F_contig10034.50.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=117bp DPTSKSLVFSQFNSSLEWLKRTLPKRGFQFRTLTGNMSRTQRTAALTAFAback to top mRNA from alignment at E-fasciculatus_F_contig10034:3205..4560- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig10034.50.1 ID=mRNA_E-fasciculatus_F_contig10034.50.1|Name=mRNA_E-fasciculatus_F_contig10034.50.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1356bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10034:3205..4560- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10034:3205..4560- >mRNA_E-fasciculatus_F_contig10034.50.1 ID=mRNA_E-fasciculatus_F_contig10034.50.1|Name=mRNA_E-fasciculatus_F_contig10034.50.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=702bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10034:3205..4560- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |