mRNA_E-fasciculatus_F_contig10029.45.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig10029.45.1 vs. uniprot
Match: D7G9J3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9J3_ECTSI) HSP 1 Score: 421 bits (1082), Expect = 1.790e-141 Identity = 211/229 (92.14%), Postives = 214/229 (93.45%), Query Frame = 1 Query: 1 HRYTLQLSAKSPPSSSSLRFESALGATQSEAFVMKVFNASAAEPVDFECHLEGGQGTHFRVPTKVTAPPCSSWDGQDVRVEVVFEPECTGEVGDTLVLSSAEHGSYRCKLRGLCSPPLPQGPFTIAPGGQREIPFRNVFAAAMDFTFTCDNPAFAVVSGDRQNVAAKTSKSVTIKFTPTSTQATGGSSSTITTAEAGRSIAGKLIVQCAGVKGTPPWVFYLHGISPPPA 687 +RYTLQLSAKSPPSSSSLRFESALGATQSEAFVMKVFNASAAEPVDFECHLEGGQGTHFRVPTKVTAPPCSSWDGQDVRVEVVFEPECTGEVGDTLVLSS +HGSYRCKLRGLCSPPLPQGPFTIAPGGQREIPFRNVFAAAMDFTFTCDNPAFAVVSGDRQNVAAKTSKSVTIKFTPT+ AEA RSIAGKLIVQCAGVKGTPPWVFYLHGISPPPA Sbjct: 311 YRYTLQLSAKSPPSSSSLRFESALGATQSEAFVMKVFNASAAEPVDFECHLEGGQGTHFRVPTKVTAPPCSSWDGQDVRVEVVFEPECTGEVGDTLVLSSEQHGSYRCKLRGLCSPPLPQGPFTIAPGGQREIPFRNVFAAAMDFTFTCDNPAFAVVSGDRQNVAAKTSKSVTIKFTPTTXXXXXXXXXXXXXAEASRSIAGKLIVQCAGVKGTPPWVFYLHGISPPPA 539
BLAST of mRNA_E-fasciculatus_F_contig10029.45.1 vs. uniprot
Match: A0A7S2V397_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V397_9STRA) HSP 1 Score: 187 bits (475), Expect = 3.510e-54 Identity = 105/226 (46.46%), Postives = 136/226 (60.18%), Query Frame = 1 Query: 1 HRYTLQLSAKSPPSSSSLRFESALGATQSEAFVMKVFNASAAEPVDFECHLEGGQGTHFRVPTKVTAPPCSSWDGQDVRVEVVFEPECTGEVGDTLVLSSAEHGSYRCKLRGLCSPPLPQGPFTIAPGGQREIPFRNVFAAAMDFTFTCDNPAFAVVSGDRQNVAAKTSKSVTIKFTPTSTQATGGSSSTITTAEAGR-SIAGKLIVQCAGVKGTPPWVFYLHGIS 675 + Y L A P + S+L FE+ LGATQ E F +VFN + F ++ Q F V K+ P SSWDG DVRVEV FEPE GEV DTLV+SS + G YRC LRG+C+P LPQGPF + PGG ++I FRNVF A +F+FT D+P F+V SG ++ +K++K VT+KFT AEAG +++ KL V C + PPWV+YL G S Sbjct: 31 YNYKLVTRANPPTALSTLHFEAPLGATQVETFTFRVFNT---KQTTFSMTVD--QPLFFEVAQKIAVDPTSSWDGHDVRVEVTFEPESLGEVQDTLVISSQDSGEYRCALRGVCTPALPQGPFVLQPGGSKDISFRNVFNEAREFSFTVDHPRFSVSSGS-VSIPSKSNKPVTVKFT----------------AEAGSGAVSAKLFVSCTSLPDMPPWVYYLQGES 234
BLAST of mRNA_E-fasciculatus_F_contig10029.45.1 vs. uniprot
Match: A0A7S3XZU9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XZU9_HETAK) HSP 1 Score: 180 bits (456), Expect = 1.820e-46 Identity = 101/223 (45.29%), Postives = 138/223 (61.88%), Query Frame = 1 Query: 7 YTLQLSAKSPPSSSSLRFESALGATQSEAFVMKVFNASAAEPVDFECHLEGGQGTHFRVPTKVTAPPCSSWDGQDVRVEVVFEPECTGEVGDTLVLSSAEHGSYRCKLRGLCSPPLPQGPFTIAPGGQREIPFRNVFAAAMDFTFTCDNPAFAVVSGDRQNVAAKTSKSVTIKFTPTSTQATGGSSSTITTAEAGRSIAGKLIVQCAGVKGTPPWVFYLHGIS 675 Y L+L A+ P + +LRFE+ LG +Q E FV++ FNA EP+ F+C + G+ F V V AP W+G +V V VVFEPE GEV DTL ++SA+ G+Y C+L G+C+P LPQGPF +A G R++PFRNVF A DFTF D+P F V + +Q++ K+SK VT+KF Q+ G +S ++ KL V CA + PPWV+YL G S Sbjct: 1268 YRLRLQAQPPAAVPTLRFEAPLGGSQQETFVLRAFNA---EPLTFDCAV--GKPLFFEVGKTVAAPAAPGWEGAEVGVRVVFEPEELGEVRDTLTVASAKGGTYACQLVGVCTPALPQGPFPVASGQARDLPFRNVFNEARDFTFVTDDPRFTVGAA-QQSLPTKSSKPVTVKF-----QSDGVTSGVVSA---------KLFVSCAALPDLPPWVYYLEGTS 1470
BLAST of mRNA_E-fasciculatus_F_contig10029.45.1 vs. uniprot
Match: A0A835YMW6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMW6_9STRA) HSP 1 Score: 179 bits (455), Expect = 2.320e-46 Identity = 105/234 (44.87%), Postives = 139/234 (59.40%), Query Frame = 1 Query: 1 HRYTLQLSAKSPPSSSSLRFESALGATQS--EAFVMKVFNASAAEPVDFECHLEGGQGTHFRVPTKVTAPP------CSSWDGQDVRVEVVFEPECTGEVGDTLVLSSAEHGSYRCKLRGLCSPPLPQGPFTIAPGGQ-REIPFRNVFAAAMDFTFTCDNPAFAVVSGDRQNVAAKTSKSVTIKFTPTSTQATGGSSSTITTAEAGRSIAGKLIVQCAGVK--GTPPWVFYLHG 669 ++Y L+L A P + +LRF +ALGA + E ++VFN + A P FEC +E FR P +V AP ++WDGQ + V V FEPE G++ DTLV++S G+YRC LRG C PP+PQGPF +APGG R++PFRNVFAA +F FT DN AFAVV G R + KT++++ +K+T A +A +LIVQC G G PPWVFYL G Sbjct: 953 YKYALRLVATPPREAHALRFATALGAAPAPVETLAVRVFNGAEAAP--FECRVER-HPQFFRAPARVAAPALLPPGSAAAWDGQILSVPVAFEPEAPGDLEDTLVVTSPIFGTYRCALRGACGPPVPQGPFRVAPGGAARDVPFRNVFAAPQEFAFTVDNAAFAVVGGARATIPGKTARAIQVKYTA----AXXXXXXXXXXXXXXXXVAAQLIVQCVGGANGGLPPWVFYLQG 1179
BLAST of mRNA_E-fasciculatus_F_contig10029.45.1 vs. uniprot
Match: A0A7S2SWL9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SWL9_9STRA) HSP 1 Score: 140 bits (354), Expect = 5.550e-37 Identity = 80/194 (41.24%), Postives = 105/194 (54.12%), Query Frame = 1 Query: 88 EAFVMKVFNASAAEPVDFECHLEGGQGTHFRVPTKVTAPPCSSWDGQDVRVEVVFEPECTGEVGDTLVLSSAEHGSYRCKLRGLCSPPLPQGPFTIAPGGQREIPFRNVFAAAMDFTFTCDNPAFAVVSGDRQNVAAKTSKSVTIKFTPTSTQATGGSSSTITTAEAGRSIAGKLIVQCAGVKGTPPWVFYLHG 669 E F + FN +P F+C + + F V A W+GQDV VEV FEPE G V DTLV+ E G YRC+L G C P PQGPF IAPGG+ ++ FRNVFA +++FT DN AF+V + R ++ AK + + ++ F P+ T+A GKL V C + PPWVFYL G Sbjct: 1 ETFSFRAFNT---KPATFKCSV--AKSAFFNVEATKAADAAPGWEGQDVHVEVRFEPEQFGGVEDTLVIDGGEAGEYRCRLAGNCRRPQPQGPFDIAPGGKVDVAFRNVFATDQEYSFTVDNEAFSVAA-PRASIKAKDTYNCSVAFNPSGTEAPQ---------------TGKLFVTCVA-QDMPPWVFYLRG 172
BLAST of mRNA_E-fasciculatus_F_contig10029.45.1 vs. uniprot
Match: A0A7S2QVW6_9STRA (Hypothetical protein n=2 Tax=Triparma pacifica TaxID=91992 RepID=A0A7S2QVW6_9STRA) HSP 1 Score: 152 bits (383), Expect = 9.550e-37 Identity = 92/228 (40.35%), Postives = 125/228 (54.82%), Query Frame = 1 Query: 1 HRYTLQLSAKSPPSSSSLRFESALGATQSEAFVMKVFNASAAEPVDFECHLEGGQGTHFRVPTKVTAPPCSS-WDGQDVRVEVVFEPECTGEVGDTLVLSSAEHGSYRCKLRGLCSPPLPQGPFTIAPGGQREIPFRNVFAAAMDFTFTCDNPAFAVVSGDRQNVAAKTSKSVTIKFTPTSTQATGGSSSTITTAEAGR----SIAGKLIVQCAGVKGTPPWVFYLHG 669 ++Y L+L+A P ++ LRFE LG Q+E F K FN +F+ +E Q TKV A C W+GQ+VR++V FEP GEV D L + S + G Y C L G+C P LPQGPF +A GG ++I FRNVF +AMDF F CD+P F V +G N+ A+ +K V +K+ E GR I+ KL V+C G + P W++YL G Sbjct: 4118 YKYDLELTAMPPSAAYQLRFECPLGGKQTETFTFKTFNKVGG---NFDNSVEKPQFFDVEKSTKVDA--CEDVWEGQNVRLQVSFEPSSIGEVRDVLKVQSKDFGEYSCTLVGVCKPQLPQGPFELADGGTKDIEFRNVFDSAMDFNFVCDDPRFTVNAGV-VNIPARGTKGVQVKYVKGEI-------------EEGRRGPEKISAKLSVRCVGREDVPAWIYYLSG 4326
BLAST of mRNA_E-fasciculatus_F_contig10029.45.1 vs. uniprot
Match: A0A813P332_ADIRI (Hypothetical protein n=2 Tax=Adineta ricciae TaxID=249248 RepID=A0A813P332_ADIRI) HSP 1 Score: 110 bits (274), Expect = 1.760e-22 Identity = 80/233 (34.33%), Postives = 112/233 (48.07%), Query Frame = 1 Query: 1 HRYTLQLSAKSPPSSSSLRFESALGATQSEAFVMKVFNASAAEPVDFECHLEGGQGTHFRVPTKVTAPPCSSWDGQDVRVEVVFEPECTGEVGDTLVLSSAEHGSYRCKLRGLCSPPLPQGPFTIAPGGQREIPFRNVFAAAMDFTFTCDNPAFAVVSGDRQNVAAKTSKSVTIKFTPTSTQATGGSSSTITTAEAGRSIAGKLIVQCAGVKGTP-------PWVFYLHGISP 678 + Y L L+A ++ F++ LG +Q V F + A D+ C ++ F V VTA P SS +V V+V +EP G+V TL +SS+ Y L GL P PQGPFTI GG I F+NVFA A+ +TF+ DNP F V S ++ + A+ S + + F S T A+ + KLIV C G P W++YL GI+P Sbjct: 5039 YTYMLSLNALPARPERTIYFKAPLGGSQ---VVSAKFTSYARTKTDYVCKIDHPD---FMVDRTVTAAPSSSPSTMEVGVDVTYEPSQLGDVRATLTISSSSGSDYIFPLVGLGELPKPQGPFTIKSGGNTTITFKNVFAQALQYTFSVDNPLFHV-SKTQELIQARKSHRIVVSF---------DGSDTSNKAD----VMAKLIVSCPKTTGAPNASSSSVQWIYYLKGITP 5251
BLAST of mRNA_E-fasciculatus_F_contig10029.45.1 vs. uniprot
Match: UPI00077AF324 (LOW QUALITY PROTEIN: hydrocephalus-inducing protein homolog n=2 Tax=Acropora TaxID=6127 RepID=UPI00077AF324) HSP 1 Score: 108 bits (271), Expect = 4.300e-22 Identity = 82/229 (35.81%), Postives = 115/229 (50.22%), Query Frame = 1 Query: 1 HRYTLQLSAKSPPSSSSLRFESALGATQSEAFVMKVFNASAAEPVDFECHLEGGQGTHFRVPTKVTAPPCSSWDGQDVRVEVVFEPECTGEVGDTLVLSSAEHGSYRCKLRGLCSPPLPQGPFTIAPGGQREIPFRNVFAAAMDFTFTCDNPAFAVVSGDRQNVAAKTSKSVTIKFTPTSTQATGGSSSTITTAEAGRSIAGKLIVQC---AGVKGTPPWVFYLHGISP 678 ++Y L L+A + + + F + LG +QS+ + F A V++ C ++ T F V +TA SS G +V VEV +EP G+ TL +SSA G Y L G CSPP PQGP++I G IPF+NVF FTF DN F V + ++ AK + +V + F GGS +A R G+L+V C AG G W FYL G++P Sbjct: 4922 YQYDLNLTATPAGTEAPVHFRAGLGTSQSQ---LVRFVNFAKSKVEYSCKVDN---TDFHVEKGITAASASS-GGTEVGVEVTYEPFRLGDTRATLTVSSAIGGEYVFPLFGHCSPPKPQGPYSIKAGATTSIPFKNVFPHTTQFTFCVDNQCFNVKKSE--SIRAKKTHNVIVGFEGNQ----GGS-------KAPRM--GRLMVTCPRSAGGGGNVTWTFYLKGVTP 5128
BLAST of mRNA_E-fasciculatus_F_contig10029.45.1 vs. uniprot
Match: A0A814YSJ5_ADIRI (Hypothetical protein n=1 Tax=Adineta ricciae TaxID=249248 RepID=A0A814YSJ5_ADIRI) HSP 1 Score: 108 bits (269), Expect = 7.810e-22 Identity = 79/233 (33.91%), Postives = 111/233 (47.64%), Query Frame = 1 Query: 1 HRYTLQLSAKSPPSSSSLRFESALGATQSEAFVMKVFNASAAEPVDFECHLEGGQGTHFRVPTKVTAPPCSSWDGQDVRVEVVFEPECTGEVGDTLVLSSAEHGSYRCKLRGLCSPPLPQGPFTIAPGGQREIPFRNVFAAAMDFTFTCDNPAFAVVSGDRQNVAAKTSKSVTIKFTPTSTQATGGSSSTITTAEAGRSIAGKLIVQCAGVKGTP-------PWVFYLHGISP 678 + Y L L+A ++ F++ LG +Q V F + A D+ C ++ F V VTA P SS +V V+V +EP G+V TL +SS+ Y L GL P PQGPFTI G I F+NVFA A+ +TF+ DNP F V S ++ + A+ S + + F S T A+ + KLIV C G P W++YL GI+P Sbjct: 5014 YTYMLSLNALPARPERTIYFKAPLGGSQ---VVSAKFTSYARTKTDYVCKIDHPD---FMVDRTVTAAPSSSPSTMEVGVDVTYEPSQLGDVRATLTISSSSGSDYIFPLVGLGELPKPQGPFTIKSGSNTTITFKNVFAQALQYTFSVDNPLFHV-SKSQELIQARKSHRIVVSF---------DGSDTSNKAD----VMAKLIVSCPKTTGAPNASSSSVQWIYYLKGITP 5226
BLAST of mRNA_E-fasciculatus_F_contig10029.45.1 vs. uniprot
Match: UPI001864ABAC (hydrocephalus-inducing protein homolog n=1 Tax=Megalops cyprinoides TaxID=118141 RepID=UPI001864ABAC) HSP 1 Score: 101 bits (252), Expect = 1.220e-19 Identity = 82/226 (36.28%), Postives = 104/226 (46.02%), Query Frame = 1 Query: 7 YTLQLSAKSPPSSSSLRFESALGATQSEAFVMKVFNASAAEPVDFECHLEGGQGTHFRVPTKVTAPPCSSWDGQDVRVEVVFEPECTGEVGDTLVLSSAEHGSYRCKLRGLCSPPLPQGPFTIAPGGQREIPFRNVFAAAMDFTFTCDNPAFAVVSGDRQNVAAKTSKSVTIKFTPTSTQATGGSSSTITTAEAGRSIAGKLIVQCAGVKGTPPWVFYLHGISPPP 684 Y LQL A P +L F + LG+ Q A K N S + ++ C + T R T TA G +V VEV FEP GE L +SS G Y L G C+PP PQGPF++ G IPFRNVF F+F DNPAF+V D ++ K + SV + F A G S +T A + G+ WVFYL G+SP P Sbjct: 4889 YELQLRALPAPRERALHFRAPLGSGQ--AVCAKFTNYSRVK-TEYTCKTDSPDFTVER--TVSTAAGYQG--GTEVSVEVYFEPCQLGESRGLLTVSSGLGGEYVFPLCGSCTPPKPQGPFSVRAGSSISIPFRNVFPQPTAFSFQVDNPAFSVRGAD--SIRPKKTHSVLVSFEGAPPGAHGPCSGKLTIASP----------RAEGLGQGVSWVFYLKGVSPEP 5095 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10029.45.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig10029.45.1 >prot_E-fasciculatus_F_contig10029.45.1 ID=prot_E-fasciculatus_F_contig10029.45.1|Name=mRNA_E-fasciculatus_F_contig10029.45.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=197bp MKVFNASAAEPVDFECHLEGGQGTHFRVPTKVTAPPCSSWDGQDVRVEVVback to top mRNA from alignment at E-fasciculatus_F_contig10029:2170..5054- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig10029.45.1 ID=mRNA_E-fasciculatus_F_contig10029.45.1|Name=mRNA_E-fasciculatus_F_contig10029.45.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2885bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10029:2170..5054- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10029:2170..5054- >mRNA_E-fasciculatus_F_contig10029.45.1 ID=mRNA_E-fasciculatus_F_contig10029.45.1|Name=mRNA_E-fasciculatus_F_contig10029.45.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1182bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10029:2170..5054- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |