mRNA_E-fasciculatus_F_contig10028.44.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig10028.44.1 vs. uniprot
Match: D8LKR2_ECTSI (Sodium/hydrogen exchanger family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKR2_ECTSI) HSP 1 Score: 486 bits (1250), Expect = 1.420e-166 Identity = 243/259 (93.82%), Postives = 251/259 (96.91%), Query Frame = 1 Query: 1 RHGNINLSVEEEEDIHMIRDGIIHKAGLHGDVAFGAHQVHKWFTRRILRLPGGVGYSDLPSRLRATWYTYHKASKFHHSSATGDDNQHRKDMELQRLNAEPRMMLEAEAWSNLNAGDDPDTLLHPNQTPVSHTLRKHLDNVGMLGFQDESGMMSDFGQREMAKQAAGSKSGTLFGSGRAGAEALRMVEGVNKLKEERRRARQAVAKAEARLSRLNKDMTISRHKGLEEDMKEYMKQAREGGMLGHASIHGGACFTNRKG 777
RHGNINLSVEEEEDIHMIRDGI+++AGLHGDVAF AHQVHKWFTRRILRLPGGVGY +LPSRLR TWYTYHK KFHHSSATGDDNQHRKDMELQRLNAEPRMMLEAEAWSNLNAGDDPDTLLHPNQTPVSHTLRKHLDNVGMLGFQDESGMMSDFGQRE+ KQAAG KSGTLFG+GR GAEALRMVEGVNKLK+ERRRARQAVAKAEARLSRLNKDMTISRHKGLEEDMKEYMKQAR+GGMLGHASIHGGACFTNRKG
Sbjct: 422 RHGNINLSVEEEEDIHMIRDGIVNEAGLHGDVAFRAHQVHKWFTRRILRLPGGVGYCELPSRLRVTWYTYHK--KFHHSSATGDDNQHRKDMELQRLNAEPRMMLEAEAWSNLNAGDDPDTLLHPNQTPVSHTLRKHLDNVGMLGFQDESGMMSDFGQREIVKQAAGGKSGTLFGTGRGGAEALRMVEGVNKLKDERRRARQAVAKAEARLSRLNKDMTISRHKGLEEDMKEYMKQARDGGMLGHASIHGGACFTNRKG 678
BLAST of mRNA_E-fasciculatus_F_contig10028.44.1 vs. uniprot
Match: A0A6H5L6F4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6F4_9PHAE) HSP 1 Score: 474 bits (1221), Expect = 2.440e-160 Identity = 240/260 (92.31%), Postives = 250/260 (96.15%), Query Frame = 1 Query: 1 RHGNINLSVEEEEDIHMIRDGIIHKAGLHGDVAFGAHQVHKWFTRRILRLPGGVGYSDLPSRLRATWYTYHKAS-KFHHSSATGDDNQHRKDMELQRLNAEPRMMLEAEAWSNLNAGDDPDTLLHPNQTPVSHTLRKHLDNVGMLGFQDESGMMSDFGQREMAKQAAGSKSGTLFGSGRAGAEALRMVEGVNKLKEERRRARQAVAKAEARLSRLNKDMTISRHKGLEEDMKEYMKQAREGGMLGHASIHGGACFTNRKG 777
RHGNINLSVEEEEDIHMIRDGI+++AGLHG +AF AHQVHKWFTRRILRL GGVGY DLPSRLR TWYTYHKAS KFHHSSATGDDNQHRKDMELQRLNAEPRM+LEAEAWSNLNAGDDPDTLLHPNQTPVSHTLRKHLDNVGMLGFQDESGMMSDFGQRE+AK AAG+KSGTLFG+ R GAEALRMVEGVNKLKEERRRAR+AVAKAEARLSRL+KDMTISRHKGLEEDMKE MKQAREGGMLGHASIHGGACFTNRKG
Sbjct: 118 RHGNINLSVEEEEDIHMIRDGIVNEAGLHGVLAFRAHQVHKWFTRRILRLRGGVGYCDLPSRLRVTWYTYHKASVKFHHSSATGDDNQHRKDMELQRLNAEPRMILEAEAWSNLNAGDDPDTLLHPNQTPVSHTLRKHLDNVGMLGFQDESGMMSDFGQREIAKHAAGAKSGTLFGTDRGGAEALRMVEGVNKLKEERRRAREAVAKAEARLSRLDKDMTISRHKGLEEDMKEVMKQAREGGMLGHASIHGGACFTNRKG 377 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10028.44.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig10028.44.1 >prot_E-fasciculatus_F_contig10028.44.1 ID=prot_E-fasciculatus_F_contig10028.44.1|Name=mRNA_E-fasciculatus_F_contig10028.44.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=259bp RHGNINLSVEEEEDIHMIRDGIIHKAGLHGDVAFGAHQVHKWFTRRILRLback to top mRNA from alignment at E-fasciculatus_F_contig10028:317..3821+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig10028.44.1 ID=mRNA_E-fasciculatus_F_contig10028.44.1|Name=mRNA_E-fasciculatus_F_contig10028.44.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3505bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10028:317..3821+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10028:317..3821+ >mRNA_E-fasciculatus_F_contig10028.44.1 ID=mRNA_E-fasciculatus_F_contig10028.44.1|Name=mRNA_E-fasciculatus_F_contig10028.44.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1554bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10028:317..3821+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |