mRNA_E-fasciculatus_F_contig10026.43.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig10026.43.1 vs. uniprot
Match: A0A6H5L599_9PHAE (4Fe-4S ferredoxin-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L599_9PHAE) HSP 1 Score: 186 bits (471), Expect = 5.710e-55 Identity = 86/88 (97.73%), Postives = 88/88 (100.00%), Query Frame = 1 Query: 1 RFVYVDEYTCIGCTHCNHEAPSTFFMEEEFGRARVYQQGRDTAEAVQTAILTCPVDCIHYVDWPELVRLEKEREGISINFKAKLVGND 264 RFVYVDEYTCIGCTHCNHEAPSTFFMEEEFGRARVYQQGRDTAEAVQTAIL+CPVDCIHYVD+PELVRLEKEREGISINFKAKLVGND Sbjct: 330 RFVYVDEYTCIGCTHCNHEAPSTFFMEEEFGRARVYQQGRDTAEAVQTAILSCPVDCIHYVDFPELVRLEKEREGISINFKAKLVGND 417
BLAST of mRNA_E-fasciculatus_F_contig10026.43.1 vs. uniprot
Match: A0A6U4KL70_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4KL70_9STRA) HSP 1 Score: 137 bits (344), Expect = 1.150e-37 Identity = 59/87 (67.82%), Postives = 70/87 (80.46%), Query Frame = 1 Query: 1 RFVYVDEYTCIGCTHCNHEAPSTFFMEEEFGRARVYQQGRDTAEAVQTAILTCPVDCIHYVDWPELVRLEKEREGISINFKAKLVGN 261 RFVYVDEY+CIGCTHC AP TFFME++ GRARV+QQG D ++TA+ CPVDCIHYV W ELV LE+EREG+ INFK +LVG+ Sbjct: 154 RFVYVDEYSCIGCTHCASHAPETFFMEDDNGRARVFQQGGDAMNVIRTAVSLCPVDCIHYVPWEELVELEQEREGLDINFKGRLVGS 240
BLAST of mRNA_E-fasciculatus_F_contig10026.43.1 vs. uniprot
Match: W7TYZ0_9STRA (Ferredoxin n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TYZ0_9STRA) HSP 1 Score: 134 bits (338), Expect = 3.800e-37 Identity = 60/88 (68.18%), Postives = 74/88 (84.09%), Query Frame = 1 Query: 1 RFVYVDEYTCIGCTHCNHEAPSTFFMEEEFGRARVYQQGRDTAEAVQTAILTCPVDCIHYVDWPELVRLEKEREGISINFKAKLVGND 264 RFVYVDEYTCIGCT+C AP+TF+M++E GRARV+QQ +D +QTAI TCPVDCIHYV + EL RLEKER G++IN+KA+LVG+D Sbjct: 110 RFVYVDEYTCIGCTNCAMTAPNTFYMDDEHGRARVFQQWKDRPRTIQTAIETCPVDCIHYVPFEELERLEKERAGMTINYKARLVGSD 197
BLAST of mRNA_E-fasciculatus_F_contig10026.43.1 vs. uniprot
Match: A0A4D9D529_9STRA (4Fe-4S ferredoxin-type domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D529_9STRA) HSP 1 Score: 134 bits (338), Expect = 8.150e-36 Identity = 60/88 (68.18%), Postives = 74/88 (84.09%), Query Frame = 1 Query: 1 RFVYVDEYTCIGCTHCNHEAPSTFFMEEEFGRARVYQQGRDTAEAVQTAILTCPVDCIHYVDWPELVRLEKEREGISINFKAKLVGND 264 RFVYVDEYTCIGCT+C AP+TF+M++E GRARV+QQ +D +QTAI TCPVDCIHYV + EL RLEKER G++IN+KA+LVG+D Sbjct: 110 RFVYVDEYTCIGCTNCAMTAPNTFYMDDEHGRARVFQQWKDRPRTIQTAIETCPVDCIHYVPFEELERLEKERAGMTINYKARLVGSD 197
BLAST of mRNA_E-fasciculatus_F_contig10026.43.1 vs. uniprot
Match: A0A6V1QAL3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1QAL3_HETAK) HSP 1 Score: 130 bits (328), Expect = 6.580e-35 Identity = 62/89 (69.66%), Postives = 71/89 (79.78%), Query Frame = 1 Query: 1 RFVYVDEYTCIGCTHCNHEAPSTFFMEEEFGRARVYQQGRDTAEAVQTAILTCPVDCIHYVDWPELVRLEKEREGIS-INFKAKLVGND 264 RFVYVDEYTCIGCT+C A +TFFMEEEFGRARV+ Q D E VQ A+ TCPVDCIH+V WPEL +LE ER G++ INFKA+LVG D Sbjct: 200 RFVYVDEYTCIGCTNCAAVAQNTFFMEEEFGRARVFLQNGDDDETVQIAVETCPVDCIHFVPWPELQKLELERAGMTEINFKARLVGGD 288
BLAST of mRNA_E-fasciculatus_F_contig10026.43.1 vs. uniprot
Match: A0A7S2V2F7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2F7_9STRA) HSP 1 Score: 112 bits (280), Expect = 1.900e-30 Identity = 52/77 (67.53%), Postives = 60/77 (77.92%), Query Frame = 1 Query: 34 GCTHCNHEAPSTFFMEEEFGRARVYQQGRDTAEAVQTAILTCPVDCIHYVDWPELVRLEKEREGISINFKAKLVGND 264 GCT+C A +TFFMEEE+GRARVYQQ D E +Q AI TCPVDCIH+V W ELV+LE ER G INFKA+LVGN+ Sbjct: 1 GCTNCAMIASNTFFMEEEYGRARVYQQAGDAEEVIQIAIETCPVDCIHFVPWNELVKLETERRGQVINFKARLVGNE 77
BLAST of mRNA_E-fasciculatus_F_contig10026.43.1 vs. uniprot
Match: A0A7S3REM5_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3REM5_9SPIT) HSP 1 Score: 116 bits (291), Expect = 2.220e-30 Identity = 52/88 (59.09%), Postives = 67/88 (76.14%), Query Frame = 1 Query: 1 RFVYVDEYTCIGCTHCNHEAPSTFFMEEEFGRARVYQQGRDTAEAVQTAILTCPVDCIHYVDWPELVRLEKEREGISINFKAKLVGND 264 +FV+VDE+ CIGCT+C A STFFME ++GRARV+QQG D E + A+ +CPV+CIHYV + +L LE+ERE INFKA+LVG D Sbjct: 5 KFVWVDEHACIGCTYCASLARSTFFMEPDYGRARVFQQGHDPEEVIDEAVASCPVNCIHYVPYSDLKILEEERESQVINFKARLVGGD 92
BLAST of mRNA_E-fasciculatus_F_contig10026.43.1 vs. uniprot
Match: A0A7S0CHH8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CHH8_9STRA) HSP 1 Score: 113 bits (282), Expect = 2.830e-30 Identity = 55/83 (66.27%), Postives = 63/83 (75.90%), Query Frame = 1 Query: 7 VYVDEYTCIGCTHCNHEAPSTFFMEEEFGRARVYQQGRDTAEAVQTAILTCPVDCIHYVDWPELVRLEKEREGISINFKAKLV 255 VYVDE TCIGCT C A STFFME+E GRARV+QQ D E +Q AI TCPVDCIHY+ + EL+RLE ER +INFKA+LV Sbjct: 51 VYVDEVTCIGCTMCATAAMSTFFMEDEHGRARVFQQWGDDDETIQIAIDTCPVDCIHYIPYEELMRLEIERREQNINFKARLV 133
BLAST of mRNA_E-fasciculatus_F_contig10026.43.1 vs. uniprot
Match: A0A7S2ENQ4_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2ENQ4_TRICV) HSP 1 Score: 118 bits (295), Expect = 3.660e-30 Identity = 57/85 (67.06%), Postives = 65/85 (76.47%), Query Frame = 1 Query: 1 RFVYVDEYTCIGCTHCNHEAPSTFFMEEEFGRARVYQQGRDTAEAVQTAILTCPVDCIHYVDWPELVRLEKEREGISINFKAKLV 255 + VYVDE+TCIGCT+C A STFFM EE GRARV+QQ D E +Q AI TCPVDCIHYV + ELVRLE ER +INFKA+LV Sbjct: 178 QMVYVDEHTCIGCTNCAMIAQSTFFMHEEHGRARVFQQWGDDDETIQVAIETCPVDCIHYVPYDELVRLEVERRDQNINFKARLV 262
BLAST of mRNA_E-fasciculatus_F_contig10026.43.1 vs. uniprot
Match: A0A7S0FI65_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FI65_9STRA) HSP 1 Score: 114 bits (284), Expect = 5.420e-30 Identity = 55/85 (64.71%), Postives = 62/85 (72.94%), Query Frame = 1 Query: 1 RFVYVDEYTCIGCTHCNHEAPSTFFMEEEFGRARVYQQGRDTAEAVQTAILTCPVDCIHYVDWPELVRLEKEREGISINFKAKLV 255 + VYVDE TCIGCT+C A STFFM+ E GRARV+QQ D E + AI TCPVDCIHYV + ELVRLE ER INFKA+LV Sbjct: 23 QMVYVDEVTCIGCTNCAMIAQSTFFMDSEHGRARVFQQWGDDTETIAVAIETCPVDCIHYVPYDELVRLEVERRDQQINFKARLV 107 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10026.43.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig10026.43.1 >prot_E-fasciculatus_F_contig10026.43.1 ID=prot_E-fasciculatus_F_contig10026.43.1|Name=mRNA_E-fasciculatus_F_contig10026.43.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=88bp RFVYVDEYTCIGCTHCNHEAPSTFFMEEEFGRARVYQQGRDTAEAVQTAIback to top mRNA from alignment at E-fasciculatus_F_contig10026:2274..3277+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig10026.43.1 ID=mRNA_E-fasciculatus_F_contig10026.43.1|Name=mRNA_E-fasciculatus_F_contig10026.43.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1004bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10026:2274..3277+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10026:2274..3277+ >mRNA_E-fasciculatus_F_contig10026.43.1 ID=mRNA_E-fasciculatus_F_contig10026.43.1|Name=mRNA_E-fasciculatus_F_contig10026.43.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=528bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10026:2274..3277+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |