mRNA_E-fasciculatus_F_contig10024.41.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_E-fasciculatus_F_contig10024.41.1
Unique Name	mRNA_E-fasciculatus_F_contig10024.41.1
Type	mRNA
Organism	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)

Homology

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BLAST of mRNA_E-fasciculatus_F_contig10024.41.1 vs. uniprot
Match: D7FY66_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY66_ECTSI)

HSP 1 Score: 162 bits (411), Expect = 5.160e-47
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1

Query:    1 EIDFPKSSEAFVCFECTARRVSWTYLMTGMETGMRALGHANETYFRVNEEGILCIQHQIPMSMGQTSFVDVLLCPD 228
            EIDFPKSSEAFVCFECTARRVSWTYLMTGMETGMRALGHANETYFRVNEEGILCIQHQIPMSMGQTSFVDVLLCPD
Sbjct:  307 EIDFPKSSEAFVCFECTARRVSWTYLMTGMETGMRALGHANETYFRVNEEGILCIQHQIPMSMGQTSFVDVLLCPD 382

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BLAST of mRNA_E-fasciculatus_F_contig10024.41.1 vs. uniprot
Match: A0A6H5JRH0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRH0_9PHAE)

HSP 1 Score: 116 bits (290), Expect = 3.700e-30
Identity = 52/59 (88.14%), Postives = 56/59 (94.92%), Query Frame = 1

Query:    1 EIDFPKSSEAFVCFECTARRVSWTYLMTGMETGMRALGHANETYFRVNEEGILCIQHQI 177
            EIDFPKSS++ VCFECTAR VSW +LMTGMETGMRALGHANETYFRVNEEGILCIQHQ+
Sbjct:  224 EIDFPKSSQSLVCFECTARGVSWAFLMTGMETGMRALGHANETYFRVNEEGILCIQHQV 282

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BLAST of mRNA_E-fasciculatus_F_contig10024.41.1 vs. uniprot
Match: A0A835YYW5_9STRA (Repair protein Rad1/Rec1/Rad17-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYW5_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 6.690e-19
Identity = 39/73 (53.42%), Postives = 54/73 (73.97%), Query Frame = 1

Query:    4 IDFPKSSEAFVCFECTARRVSWTYLMTGMETGMRALGHANETYFRVNEEGILCIQHQIPMSMGQTSFVDVLLC 222
            I FP+SSEAFV F CT   + W+Y ++ +E GMRAL  A ET+ R+NEEGI+CIQHQ+ ++ G  ++VD L+C
Sbjct:  229 IQFPRSSEAFVHFSCTPPSLRWSYALSALEGGMRALPFAQETFVRINEEGIMCIQHQVQVA-GHNTYVDFLIC 300

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BLAST of mRNA_E-fasciculatus_F_contig10024.41.1 vs. uniprot
Match: A0A7S0XDK7_9STRA (Hypothetical protein (Fragment) n=2 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XDK7_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 5.500e-16
Identity = 34/76 (44.74%), Postives = 51/76 (67.11%), Query Frame = 1

Query:    1 EIDFPKSSEAFVCFECTARRVSWTYLMTGMETGMRALGHANETYFRVNEEGILCIQHQIPMSMGQTSFVDVLLCPD 228
            EI+FP+ S+ FV F C  +   WTY +T ++ GM+AL  + ET+ R+NEEG++CIQHQI  + G   ++D L+  D
Sbjct:  149 EIEFPRLSDLFVSFRCD-KSSKWTYPLTSLQLGMKALNISKETFIRMNEEGVICIQHQIETNRGHEIYIDYLMVSD 223

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BLAST of mRNA_E-fasciculatus_F_contig10024.41.1 vs. uniprot
Match: A0A4D9CMN7_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CMN7_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 2.380e-15
Identity = 39/73 (53.42%), Postives = 52/73 (71.23%), Query Frame = 1

Query:    1 EIDFPKSSEAFVCFECTARRVSWTYLMTGMETGMRALGHANETYFRVNEEGILCIQHQIPMSMG-QTSFVDVL 216
            EI  PKSSEAFV F+C+  R SW+Y +  +  GMRAL  A ETY R+NEEGI+C+QHQ+  +   Q++F+D L
Sbjct:  212 EIFLPKSSEAFVHFDCSEAR-SWSYGLGALNQGMRALTVAKETYVRINEEGIMCVQHQVENTASRQSTFIDFL 283

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BLAST of mRNA_E-fasciculatus_F_contig10024.41.1 vs. uniprot
Match: A0A7S2G8B6_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G8B6_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 1.840e-11
Identity = 32/76 (42.11%), Postives = 46/76 (60.53%), Query Frame = 1

Query:    1 EIDFPKSSEAFVCFECTARRVSWTYLMTGMETGMRALGHANETYFRVNEEGILCIQHQIPMSMGQTSFVDVLLCPD 228
            +I+FP+SS+ F  FECT   +   Y       GMRAL  + E+YFR+NE G+LCIQH +    G   F+D ++ P+
Sbjct:  190 DIEFPRSSDLFELFECT-ETMKTEYDYDSFVQGMRALTVSEESYFRINEGGLLCIQHHVETHGGGRCFIDFIMLPN 264

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BLAST of mRNA_E-fasciculatus_F_contig10024.41.1 vs. uniprot
Match: A0A8K1C6J7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C6J7_PYTOL)

HSP 1 Score: 65.5 bits (158), Expect = 9.670e-11
Identity = 32/82 (39.02%), Postives = 48/82 (58.54%), Query Frame = 1

Query:    1 EIDFPKSSEAFVCFECTARRVS------WTYLMTGMETGMRALGHANETYFRVNEEGILCIQHQIPMSMGQTSFVDVLLCPD 228
            EI+F +SS AF+ F CT    S       T+ +  ++   +ALGH+NET+ R+N +G L +QH I    G  +FVD L+ P+
Sbjct:  263 EIEFARSSSAFIEFFCTNDETSDDGSASATFHVAVLQQAFKALGHSNETFLRMNADGFLSVQHMIESGSGDKAFVDALISPE 344

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BLAST of mRNA_E-fasciculatus_F_contig10024.41.1 vs. uniprot
Match: F0XY36_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XY36_AURAN)

HSP 1 Score: 61.6 bits (148), Expect = 2.590e-9
Identity = 31/78 (39.74%), Postives = 44/78 (56.41%), Query Frame = 1

Query:    1 EIDFPKSSEAFVCFECTARRVSWTYLMTGMETGMRALGHANETYFRVNEEGILCIQHQIP--MSMGQTSFVDVLLCPD 228
            +ID P+  +AFV FE      SWTY       GM+AL H++ETY RVN+ G+L +QH +      G   +++ L C D
Sbjct:  205 QIDVPR--DAFVVFEAPEETRSWTYQTQAFLHGMKALPHSHETYVRVNDHGMLLVQHMVANDRGAGDNMYLEYLCCSD 280

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BLAST of mRNA_E-fasciculatus_F_contig10024.41.1 vs. uniprot
Match: A0A7S4NJK3_9EUKA (Hypothetical protein n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4NJK3_9EUKA)

HSP 1 Score: 57.4 bits (137), Expect = 6.610e-8
Identity = 30/76 (39.47%), Postives = 49/76 (64.47%), Query Frame = 1

Query:    4 IDFPKSSEAFVCFECTARRVSWTYLMTGMETGMRALGH-ANETYFRVNEEGILCIQHQIPMSMGQ-TSFVDVLLCP 225
            I FP+ S AFV F+C + ++ +TY +  ++  ++A G+ A +T  R+NE G+LC+QH + +  G+ T FVD  L P
Sbjct:  216 IQFPRDSPAFVEFDCRSTQI-FTYKLQHLQPALKASGNLATQTQIRMNERGMLCMQHMLSVPDGKKTCFVDFYLLP 290

The following BLAST results are available for this feature:

BLAST of mRNA_E-fasciculatus_F_contig10024.41.1 vs. uniprot

BLAST of mRNA_E-fasciculatus_F_contig10024.41.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 9

ZOOM

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POSITION

0


Match Name	E-value	Identity	Description
D7FY66_ECTSI	5.160e-47	100.00	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5JRH0_9PHAE	3.700e-30	88.14	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A835YYW5_9STRA	6.690e-19	53.42	Repair protein Rad1/Rec1/Rad17-domain-containing p...	[more]
A0A7S0XDK7_9STRA	5.500e-16	44.74	Hypothetical protein (Fragment) n=2 Tax=Chromulina...	[more]
A0A4D9CMN7_9STRA	2.380e-15	53.42	Uncharacterized protein n=1 Tax=Nannochloropsis sa...	[more]
A0A7S2G8B6_9STRA	1.840e-11	42.11	Hypothetical protein n=1 Tax=Florenciella parvula ...	[more]
A0A8K1C6J7_PYTOL	9.670e-11	39.02	Uncharacterized protein n=1 Tax=Pythium oligandrum...	[more]
F0XY36_AURAN	2.590e-9	39.74	Uncharacterized protein n=1 Tax=Aureococcus anopha...	[more]
A0A7S4NJK3_9EUKA	6.610e-8	39.47	Hypothetical protein n=1 Tax=Paramoeba aestuarina ...	[more]

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	163.3
Seed ortholog evalue	4.4e-38
Seed eggNOG ortholog	2880.D7FY66
Preferred name	RAD1
KEGG ko	ko:K02830,ko:K05665
KEGG TC	3.A.1.208.8
KEGG Pathway	ko01523,ko02010,ko04071,ko04111,ko04113,ko04218,ko04977,ko05206,map01523,map02010,map04071,map04111,map04113,map04218,map04977,map05206
GOs	GO:0000003,GO:0000075,GO:0000076,GO:0000077,GO:0000228,GO:0000278,GO:0000280,GO:0000723,GO:0000785,GO:0000792,GO:0000793,GO:0000794,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003690,GO:0003824,GO:0004518,GO:0004527,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0006139,GO:0006259,GO:0006278,GO:0006281,GO:0006289,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006915,GO:0006950,GO:0006974,GO:0006996,GO:0007004,GO:0007049,GO:0007093,GO:0007095,GO:0007127,GO:0007131,GO:0007154,GO:0007165,GO:0007346,GO:0008150,GO:0008152,GO:0008219,GO:0008408,GO:0008630,GO:0009058,GO:0009059,GO:0009314,GO:0009628,GO:0009987,GO:0010212,GO:0010389,GO:0010564,GO:0010639,GO:0010833,GO:0010948,GO:0010972,GO:0012501,GO:0016043,GO:0016787,GO:0016788,GO:0018130,GO:0019438,GO:0022402,GO:0022414,GO:0023052,GO:0030896,GO:0031570,GO:0031572,GO:0031573,GO:0031974,GO:0031981,GO:0032200,GO:0032991,GO:0033043,GO:0033313,GO:0033314,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0035556,GO:0035825,GO:0035861,GO:0040020,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044773,GO:0044774,GO:0044818,GO:0045786,GO:0045835,GO:0045930,GO:0046483,GO:0048285,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051129,GO:0051276,GO:0051321,GO:0051445,GO:0051447,GO:0051598,GO:0051716,GO:0051726,GO:0051783,GO:0051784,GO:0060249,GO:0061982,GO:0065007,GO:0065008,GO:0070013,GO:0071214,GO:0071478,GO:0071479,GO:0071704,GO:0071840,GO:0071897,GO:0090304,GO:0090305,GO:0090734,GO:0097159,GO:0097190,GO:0097193,GO:0104004,GO:0140013,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902749,GO:1902750,GO:1903046,GO:1903047,GO:1990421,GO:2000241,GO:2000242
EggNOG free text desc.	exodeoxyribonuclease III activity
EggNOG OGs	KOG3194@1,KOG3194@2759
EC	3.1.11.2
COG Functional cat.	V
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko01000,ko02000,ko03400
Hectar predicted targeting category	other localisation
Exons	2
Model size	228
Cds size	228
Stop	0
Start	0

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at E-fasciculatus_F_contig10024:3844..4945-
coding sequence from alignment at E-fasciculatus_F_contig10024:3844..4945-

protein sequence of mRNA_E-fasciculatus_F_contig10024.41.1

>prot_E-fasciculatus_F_contig10024.41.1 ID=prot_E-fasciculatus_F_contig10024.41.1|Name=mRNA_E-fasciculatus_F_contig10024.41.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=76bp
EIDFPKSSEAFVCFECTARRVSWTYLMTGMETGMRALGHANETYFRVNEE
GILCIQHQIPMSMGQTSFVDVLLCPD

mRNA from alignment at E-fasciculatus_F_contig10024:3844..4945-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_E-fasciculatus_F_contig10024.41.1 ID=mRNA_E-fasciculatus_F_contig10024.41.1|Name=mRNA_E-fasciculatus_F_contig10024.41.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1102bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10024:3844..4945- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GAGATCGACTTCCCCAAGAGCTCAGAGGCGTTCGTGTGCTTCGAATGCAC
CGCGAGGAGGGTGTCGTGGACCTACCTCATGACCGGGATGGAGACCGGCA
TGCGCGCCCTGGGGCACGCCAACGAAACCTACTTCAGAGTTAACGAGGAG
GGCATCCTCTGCATACAGCATCAGGTAACGTGACTTGATCGCTCTCCCTC
TAATAGAGGACTGCTCTCGGTACAAAAGCTTTGCTGAAAGGTCGCCGTTG
GTGTGGAACACATCTGTCTTCGTGTGGGTCTGAAATTCTGACCACATCAG
GATCAATAGGAGACCAACCTACGCATCTTGTTTTGAGGACAGCAACATCC
ACCATTTGGATACCGTTGGGTCGATCTTGGAGCCGAAGCATCAGGTGACG
TGACTTGGTCACTCCCTGCGGTAATAGTTAAGAAGGGGGGTTCAGCATCA
GGTGGGGCGACTTGATTGCTCTCTTTCGTTCTTGAGGCAACACGAGTCAC
GGTCGGGCTTGACCTCATAAGGTGGCTTGATTGCCACGAGTCGGGGTGAA
TGCGCAGAATGTTGAACGCCTCGTTCTCACGCGAAGGGCACAGATTGTCG
GGGCGGGCAGGAAGGTGGGATAGGATAAAACATATTTCTGGCATCCATTT
GCCAAGTGGGGACACTAATTTTTCGATTCTCCTGGCACATTGCTCGATTT
TGGCGCATGCGCTGGCACACAGATGTTGGCGCATGCGCTGGCACACAGCG
AGACCTCCTGATGCAATAACGACGGTATACCCTGATGTTTACAGCGGGGA
GAGAAAGAGTAGCGGAACTCGAAACATACGGAGTTCCATCAAGAGATGGG
GGAGGGTGCTCTGACTAGGGTGTTTATGTGTGCCTAAGTGGGTTGGGACG
GCCCATTATGCGACCTCCTCGGGGGGGGGATATTCGGAACGGAACCCCAC
CAACGCTCTAGCTGGGTGCCAGATGACTGTGGGGTATATCGTTTCTCGCG
CCAAACAGCAACACGTGTGCCCGCCGATCATTTTTTCATGACGCGTAGAT
CCCCATGAGCATGGGGCAGACCAGCTTCGTGGACGTGTTGCTGTGCCCGG
AC

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10024:3844..4945-

>mRNA_E-fasciculatus_F_contig10024.41.1 ID=mRNA_E-fasciculatus_F_contig10024.41.1|Name=mRNA_E-fasciculatus_F_contig10024.41.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=456bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10024:3844..4945- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GAGATCGACTTCCCCAAGAGCTCAGAGGCGTTCGTGTGCTTCGAATGCAC
CGCGAGGAGGGTGTCGTGGACCTACCTCATGACCGGGATGGAGACCGGCA
TGCGCGCCCTGGGGCACGCCAACGAAACCTACTTCAGAGTTAACGAGGAG
GGCATCCTCTGCATACAGCATCAGGAGATCGACTTCCCCAAGAGCTCAGA
GGCGTTCGTGTGCTTCGAATGCACCGCGAGGAGGGTGTCGTGGACCTACC
TCATGACCGGGATGGAGACCGGCATGCGCGCCCTGGGGCACGCCAACGAA
ACCTACTTCAGAGTTAACGAGGAGGGCATCCTCTGCATACAGCATCAGAT
CCCCATGAGCATGGGGCAGACCAGCTTCGTGGACGTGTTGCTGTGCCCGG
ACATCCCCATGAGCATGGGGCAGACCAGCTTCGTGGACGTGTTGCTGTGC
CCGGAC