mRNA_E-fasciculatus_F_contig10021.39.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig10021.39.1 vs. uniprot
Match: D8LDR0_ECTSI (COX11 homolog, cytochrome c oxidase assembly protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDR0_ECTSI) HSP 1 Score: 297 bits (760), Expect = 2.060e-100 Identity = 167/192 (86.98%), Postives = 173/192 (90.10%), Query Frame = 1 Query: 1 MLRRAAGHATCKRLLGQPLTPRSAGSTRAISVLLAKQQQH--SVVMASLRRRSQHLQLGHSEWLRRTTGSTSRVAALGVPRSVSRSISAGRAAELKARNRKVAIYMASVVTAVLGVSYAAVPLYKVFCQVTGFGGTTQVADADKALKMSPVEGGRVIRVTFDGGTADTMPWKFRPTQSDVKVGTTL-AGANF 567
MLRRAAGH+TCKRLLGQP+ PRSAGSTRAISVLLAK Q +V+ ASLRRR QH Q GHS WLR TTGST RVA LG PR+ SRSISAGRAAELKARNRKVAIYMASVVTAVLGVSYAAVPLYKVFCQVTGFGGTTQVADADKALKMSPVEGGRVIRVTFDGGTADTMPWKFRPTQSDVK GTT+ AGA F
Sbjct: 1 MLRRAAGHSTCKRLLGQPVAPRSAGSTRAISVLLAKPPQXXXAVIRASLRRR-QHQQPGHSAWLRGTTGSTCRVAVLGAPRAASRSISAGRAAELKARNRKVAIYMASVVTAVLGVSYAAVPLYKVFCQVTGFGGTTQVADADKALKMSPVEGGRVIRVTFDGGTADTMPWKFRPTQSDVKAGTTMFAGAIF 191
BLAST of mRNA_E-fasciculatus_F_contig10021.39.1 vs. uniprot
Match: A0A6H5L0W6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0W6_9PHAE) HSP 1 Score: 283 bits (725), Expect = 3.710e-95 Identity = 158/186 (84.95%), Postives = 166/186 (89.25%), Query Frame = 1 Query: 1 MLRRAAGHATCKRLLGQPLTPRSAGSTRAISVLLAKQ--QQHSVVMASLRRRSQHLQLGHSEWLRRTTGSTSRVAALGVPRSVSRSISA---GRAAELKARNRKVAIYMASVVTAVLGVSYAAVPLYKVFCQVTGFGGTTQVADADKALKMSPVEGGRVIRVTFDGGTADTMPWKFRPTQSDVKVG 543
ML+RAA H+TCKRLLGQP+ PRSAGSTRAISVLLA Q QQH+V+ ASLRRR QH Q GHS WLR TGSTSR++ LG PR+ SRSISA GRAAELKARNRKVAIYMASVVTAVLGVSYAAVPLYKVFCQVTGFGGTTQVADA KALKMSPVEGGRVIRVTFDGGTADTMPWKFRPTQSDVK G
Sbjct: 1 MLKRAASHSTCKRLLGQPVAPRSAGSTRAISVLLANQPKQQHAVIRASLRRR-QHQQPGHSAWLRGMTGSTSRISVLGAPRAASRSISAAAAGRAAELKARNRKVAIYMASVVTAVLGVSYAAVPLYKVFCQVTGFGGTTQVADAGKALKMSPVEGGRVIRVTFDGGTADTMPWKFRPTQSDVKAG 185
BLAST of mRNA_E-fasciculatus_F_contig10021.39.1 vs. uniprot
Match: A0A835ZEK6_9STRA (Cytochrome c oxidase assembly protein CtaG/Cox11-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEK6_9STRA) HSP 1 Score: 115 bits (288), Expect = 4.230e-28 Identity = 58/88 (65.91%), Postives = 68/88 (77.27%), Query Frame = 1 Query: 277 LKARNRKVAIYMASVVTAVLGVSYAAVPLYKVFCQVTGFGGTTQVADADKALKMSPVEGGRVIRVTFDGGTADTMPWKFRPTQSDVKV 540
L+ RNRK+A+YM SVV V GVSYAAVPLYK FCQ TGFGGTTQVA +K +M P+ R+I VTFDG ADTMPW+FR +QS V+V
Sbjct: 44 LRERNRKIAMYMLSVVVGVGGVSYAAVPLYKAFCQATGFGGTTQVATREKTDRMVPLADSRLITVTFDGMVADTMPWRFRQSQSAVRV 131
BLAST of mRNA_E-fasciculatus_F_contig10021.39.1 vs. uniprot
Match: A0A7R9U5I8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U5I8_9STRA) HSP 1 Score: 110 bits (276), Expect = 1.030e-27 Identity = 52/88 (59.09%), Postives = 66/88 (75.00%), Query Frame = 1 Query: 277 LKARNRKVAIYMASVVTAVLGVSYAAVPLYKVFCQVTGFGGTTQVADADKALKMSPVEGGRVIRVTFDGGTADTMPWKFRPTQSDVKV 540
LK +N +VA+Y++SVV A +G+ YAAVPLYK FCQ+TGFGGTTQ D A K+ PVE GR++R+TF G TA T+PW F P Q V+V
Sbjct: 20 LKRQNERVALYLSSVVIAFIGLGYAAVPLYKAFCQLTGFGGTTQRVDEKTAEKVKPVEDGRLLRITFAGNTASTLPWSFNPLQRSVRV 107
BLAST of mRNA_E-fasciculatus_F_contig10021.39.1 vs. uniprot
Match: A0A482RTI3_9ARCH (Cytochrome c oxidase assembly protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RTI3_9ARCH) HSP 1 Score: 111 bits (277), Expect = 6.760e-27 Identity = 50/87 (57.47%), Postives = 66/87 (75.86%), Query Frame = 1 Query: 280 KARNRKVAIYMASVVTAVLGVSYAAVPLYKVFCQVTGFGGTTQVADADKALKMSPVEGGRVIRVTFDGGTADTMPWKFRPTQSDVKV 540
K+ N+KVA Y+ + V G+SYAAVPLYKVFCQ+TGFGGTTQVA+ A K+SP+E GR++++ F DTMPW F+PTQ +V+V
Sbjct: 40 KSDNKKVAYYLGAATVLVFGLSYAAVPLYKVFCQMTGFGGTTQVAEESSAKKISPIENGRILKIYFTASVHDTMPWSFKPTQREVRV 126
BLAST of mRNA_E-fasciculatus_F_contig10021.39.1 vs. uniprot
Match: A0A1V9YAD6_9STRA (Cytochrome c oxidase assembly protein COX11, mitochondrial n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YAD6_9STRA) HSP 1 Score: 107 bits (266), Expect = 1.860e-25 Identity = 50/88 (56.82%), Postives = 64/88 (72.73%), Query Frame = 1 Query: 277 LKARNRKVAIYMASVVTAVLGVSYAAVPLYKVFCQVTGFGGTTQVADADKALKMSPVEGGRVIRVTFDGGTADTMPWKFRPTQSDVKV 540
L +N+++ +Y AS G +YAAVPLYK+FCQ+TGFGGTTQ +D A K+SPVEG + IRVTFDGG A +MPW FRP Q D+ +
Sbjct: 31 LDEKNKRILMYTASTALLFFGAAYAAVPLYKIFCQMTGFGGTTQRSDMLTAEKLSPVEGAKPIRVTFDGGVASSMPWSFRPIQRDLVI 118
BLAST of mRNA_E-fasciculatus_F_contig10021.39.1 vs. uniprot
Match: F0XYP1_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XYP1_AURAN) HSP 1 Score: 105 bits (263), Expect = 2.060e-25 Identity = 50/86 (58.14%), Postives = 67/86 (77.91%), Query Frame = 1 Query: 286 RNRKVAIYMASVVTAVLGVSYAAVPLYKVFCQVTGFGGTTQVADADKALKM-SPVEGGRVIRVTFDGGTADTMPWKFRPTQSDVKV 540
RN +V +Y SVV + LG+ YA+VPLYKVFCQ TGFGGTT+ AD ++A ++ +PVEGGRV+RVTFD +D++PW F P Q DV++
Sbjct: 2 RNTRVLLYGCSVVVSTLGLCYASVPLYKVFCQTTGFGGTTKRADPEEAARLLAPVEGGRVLRVTFDAHVSDSLPWSFAPAQRDVRL 87
BLAST of mRNA_E-fasciculatus_F_contig10021.39.1 vs. uniprot
Match: A0A067D8C3_SAPPC (Uncharacterized protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067D8C3_SAPPC) HSP 1 Score: 105 bits (263), Expect = 5.180e-25 Identity = 50/88 (56.82%), Postives = 62/88 (70.45%), Query Frame = 1 Query: 277 LKARNRKVAIYMASVVTAVLGVSYAAVPLYKVFCQVTGFGGTTQVADADKALKMSPVEGGRVIRVTFDGGTADTMPWKFRPTQSDVKV 540
L +N+++ +Y AS G +YAAVPLYK+FCQ+TGFGGTTQ +D A K+SPVEG IRVTFDGG A MPW FRP Q D+ +
Sbjct: 31 LDEKNKRIMLYTASTALLFFGAAYAAVPLYKIFCQMTGFGGTTQRSDILTAEKLSPVEGAHPIRVTFDGGVAGAMPWSFRPIQRDLVI 118
BLAST of mRNA_E-fasciculatus_F_contig10021.39.1 vs. uniprot
Match: A0A6G0WXN5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WXN5_9STRA) HSP 1 Score: 105 bits (262), Expect = 7.830e-25 Identity = 48/89 (53.93%), Postives = 64/89 (71.91%), Query Frame = 1 Query: 274 ELKARNRKVAIYMASVVTAVLGVSYAAVPLYKVFCQVTGFGGTTQVADADKALKMSPVEGGRVIRVTFDGGTADTMPWKFRPTQSDVKV 540
+LK +N+++ Y + V+ G +YAAVPLYKVFCQ+TGFGGTTQ +D +A K+SPVEG IR+TFDGG MPW F+P Q D+ +
Sbjct: 33 QLKDKNKRILYYTSGVILMCFGAAYAAVPLYKVFCQMTGFGGTTQRSDILRAEKLSPVEGAHPIRITFDGGVGGAMPWAFKPVQRDLII 121
BLAST of mRNA_E-fasciculatus_F_contig10021.39.1 vs. uniprot
Match: A0A024UCT1_9STRA (Uncharacterized protein n=6 Tax=Aphanomyces TaxID=100860 RepID=A0A024UCT1_9STRA) HSP 1 Score: 104 bits (260), Expect = 1.620e-24 Identity = 53/99 (53.54%), Postives = 67/99 (67.68%), Query Frame = 1 Query: 244 SRSISAGRAAELKARNRKVAIYMASVVTAVLGVSYAAVPLYKVFCQVTGFGGTTQVADADKALKMSPVEGGRVIRVTFDGGTADTMPWKFRPTQSDVKV 540
S S A A +L+ +NR++ Y + VV G +YAAVPLYKVFCQ+TGFGGTTQ +D A K+SPVEG IR+TFDGG MPW F+P Q D+ +
Sbjct: 25 SMSSKAAYAKQLQEKNRRILYYTSGVVILFFGGAYAAVPLYKVFCQMTGFGGTTQRSDILAAEKLSPVEGAHPIRITFDGGVGGAMPWTFKPVQRDLII 123 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10021.39.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig10021.39.1 >prot_E-fasciculatus_F_contig10021.39.1 ID=prot_E-fasciculatus_F_contig10021.39.1|Name=mRNA_E-fasciculatus_F_contig10021.39.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=189bp MLRRAAGHATCKRLLGQPLTPRSAGSTRAISVLLAKQQQHSVVMASLRRRback to top mRNA from alignment at E-fasciculatus_F_contig10021:2168..4365+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig10021.39.1 ID=mRNA_E-fasciculatus_F_contig10021.39.1|Name=mRNA_E-fasciculatus_F_contig10021.39.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2198bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10021:2168..4365+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10021:2168..4365+ >mRNA_E-fasciculatus_F_contig10021.39.1 ID=mRNA_E-fasciculatus_F_contig10021.39.1|Name=mRNA_E-fasciculatus_F_contig10021.39.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1134bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10021:2168..4365+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |